View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16155_high_9 (Length: 329)
Name: NF16155_high_9
Description: NF16155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16155_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 2 - 309
Target Start/End: Original strand, 39210177 - 39210482
Alignment:
| Q |
2 |
tccatttgatgtatacaagaatgagtttgaggtggctgtcaaaaagaggaacgagaaagtctattttaccgacggttggacattttttaaagaattttat |
101 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
39210177 |
tccatttgatgtatacaagaatgactttgaggtggctgtcaaaaagaggaacgtgaaagtctattttactgacggttggacatttt-taaagaattttat |
39210275 |
T |
|
| Q |
102 |
cgacttttggctggtacttggatcactgtcatttttgcaaatcgacacctttttctgtttgaagttaggaatatgcatggagatgagttggtgtatcctc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39210276 |
gtgcttttggctggtacttggatcactgtcatttttgcaaatcgacacctttttctgtttgaagttaggaatatgcatggagatgagttggtgtatcctc |
39210375 |
T |
|
| Q |
202 |
aaagcactcctccacaaagaatgttgttgcagaaccatagtgctcatgcttacgttaatccattcataccatatggtttttctgcccttttacttcccac |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39210376 |
aaagcactcctccacaaagaatgttgttgcagaaccatagtgctcatgcttacg-taatcccttcataccatatggttcttctgcccttttacttcccac |
39210474 |
T |
|
| Q |
302 |
taccttct |
309 |
Q |
| |
|
|||||||| |
|
|
| T |
39210475 |
taccttct |
39210482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 7673978 - 7673907
Alignment:
| Q |
106 |
ttttggctggtacttggatcactgtcatttttgcaaatcgacacctttttctgtttgaagttaggaatatgc |
177 |
Q |
| |
|
||||||||||||||||| |||| | |||||| ||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
7673978 |
ttttggctggtacttgggtcacaattattttttcaaatcgacacatttttctgtttgaagttagaaatatgc |
7673907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 27510799 - 27510502
Alignment:
| Q |
16 |
acaagaatgagtttgaggtggctgtcaaaaagaggaacgagaaagtctattttaccgacggttggacattttttaaagaatttta-tcgacttttggctg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | | |||||||||| |
|
|
| T |
27510799 |
acaagaatgagtttgaggtggctgtcaaaaagaggaacgagaaagtctattttactgacggttggacattttt-aaagaattttaatgggcttttggctg |
27510701 |
T |
|
| Q |
115 |
gtacttggatcactgtcatttttgcaaatcgacacctttttctgtttgaagttaggaatatgcatggagatgagttggtgtatcctcaaagcactcctcc |
214 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27510700 |
gtacttggatcactgtcatttttgaaaatcgacacctttttctgtttgaagttaggaatatacatggagatgagttggtgtatcctcaaagcactcctcc |
27510601 |
T |
|
| Q |
215 |
acaaagaatgttgttgcagaaccatagtgctcatgcttacgttaatccattcataccatatggtttttctgcccttttacttcccactaccttctataa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
27510600 |
acaaagaatgttgttgcagaaccatagtgctcatgcgtacgtaaattccttcataccatatggttcttctgcccttttacttcccactaccttttataa |
27510502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 42091912 - 42091774
Alignment:
| Q |
19 |
agaatgagtttgaggtggctgtcaaaaagaggaacgagaaagtctattttaccgacggttggacattttttaaagaattttatc-gacttttggctggta |
117 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||||| |||||| |||||| || |||||| | | |||| ||||||||| | | ||||||||||| |
|
|
| T |
42091912 |
agaatgagattgaggtagctgtggaaaagaggaacgggaaagtttattttgatgatggttgggc-tgttttgaagaatttttacaggattttggctggtt |
42091814 |
T |
|
| Q |
118 |
cttggatcactgtcatttttgcaaatcgacacctttttct |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42091813 |
cttggatcactgtcatttttgcaaatcgacgcctttttct |
42091774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 31949210 - 31949368
Alignment:
| Q |
42 |
aaaaagaggaacgagaaagtctattttaccgacggttggacattttttaaagaatttta-tcgacttttggctggtacttggatcactgtcatttttgca |
140 |
Q |
| |
|
||||||| ||||| || || |||||||| || |||||||||||||| ||||| |||| | | |||||| |||| |||||||||| | ||||||||| |
|
|
| T |
31949210 |
aaaaagaagaacgggagggtttattttactgatggttggacattttt-aaagagctttaatgggattttgggtggtgcttggatcacaattatttttgca |
31949308 |
T |
|
| Q |
141 |
aatcgacacctttttctgtttgaagttaggaatatgcatggagatgagttggtgtatcct |
200 |
Q |
| |
|
|||||||| ||||||||| | | || || ||| ||||||||| | | |||||||||||| |
|
|
| T |
31949309 |
aatcgacatctttttctgatggtggtaagaaatctgcatggagtttaattggtgtatcct |
31949368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 27592764 - 27592805
Alignment:
| Q |
106 |
ttttggctggtacttggatcactgtcatttttgcaaatcgac |
147 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||||||||||||| |
|
|
| T |
27592764 |
ttttggttggttcttggaccactgtcatttttgcaaatcgac |
27592805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University