View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16155_low_1 (Length: 738)

Name: NF16155_low_1
Description: NF16155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16155_low_1
NF16155_low_1
[»] chr2 (1 HSPs)
chr2 (16-719)||(519767-520431)


Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 16 - 719
Target Start/End: Complemental strand, 520431 - 519767
Alignment:
Q  16 atgtttttgtttacctttccaaaacgatagatagaacgctcaaccaagaagcaaacaaagaccatgacagtaacaacggaggcaactgaatatgtaggtg 115  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  520431 atgtttttgtttacctttccaaaacggtagatagaacgctcaaccaagaagcaaacaaagaccatgacagtaacaacggaggcaactgaatatgtaggtg 520332  T
Q  116 tctcagctagagaacgagcttgctccacaacatgttccattataatatttcttcttattcttacatcaacagaacacagtctttagttcattaaaatgaa 215  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||    
T  520331 tctcagctagagaacgaccttgctccacagcatgttccattataatatttcttctta------catcaacagaacacagtctttagttcattaaaatgaa 520238  T
Q  216 gagcagatagatgggatccaggaaggaaaaagagaagttcaatctgagagtgttttgttttatatgattaatt-aatttagttgaaaggtgcagtgcatg 314  Q
    ||||||||    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||     |     
T  520237 gagcagat----gggatccaggaaggaaaaagagaagctcaatctgagagtgttttgttttatatgattaatttaatttagttgaaaggtgca-----ta 520147  T
Q  315 tgtgtggagagaggacattaattaaaatattgaatatgcaagtatagatcctactcacttttgatttgatcatatatttattaattaatgaaactctttt 414  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  520146 tatgtggagagaggacattaattaaaatattgaatatgcaagtatagatcctactcacttttgatttgatcatatatt----aattaatgaaactctttt 520051  T
Q  415 gtttatagttattgtcaaagttacgtgcaatgcattggtgctgtctgtgacacacacatggtaccatccatgcacatggagagtttttcattctccaagg 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  520050 gtttatagttattgtcaaagttacgtgcaatgcattggtgctgtctgtgacacacacatggtaccat----gcacatggagagtttttcattctccaagg 519955  T
Q  515 ttcttgttacaaacaactttttgatggtaagttgcaagggaccaaggggtcccggtccctctaagaaaaaccggtatggcattaattataattaattttt 614  Q
    || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||| |    
T  519954 ttgttgttacaaacaacttttagatggtaagttgcaagggaccaaggggtcccggtccctctaagaaaaaccggtatggcatta------attaatttat 519861  T
Q  615 ataaatatagcaaactgctaaaaagacaacagaaggaaagggaaaaggaagttcaataataatttaatgatggaaatgttaattcctgctcaccaataaa 714  Q
    |||||||||||||||||||||||||||           ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  519860 ataaatatagcaaactgctaaaaagac-----------agggaaaaggaagttcaataataatttaacgatggaaatattaattcctgctcaccaataaa 519772  T

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