View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16155_low_13 (Length: 325)
Name: NF16155_low_13
Description: NF16155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16155_low_13 |
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| [»] scaffold0495 (1 HSPs) |
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Alignment Details
Target: scaffold0495 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0495
Description:
Target: scaffold0495; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 12359 - 12652
Alignment:
| Q |
17 |
atatcgtcatttaaaaccttagatagaagtacaacccttattcaaatccgggtaattagacaacaaaactttgtcgacattagatagttagacagcttca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12359 |
atatcgtcatttaaaaccttagatagaagtacaacccttattcaaatccgggtaattagacaacaaaactttgtcgacattagatagttagacagcttca |
12458 |
T |
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| Q |
117 |
ctttgcttggatggataactaacctaatctaacactttcctcatgtggctgttcctagtacgaaccaaagtcccatgaaacataaaaacaactttcctac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12459 |
ctttgcttggatggataactaacctaatctaacactttcctcatgtggctgttcctagtacgaaccaaagtcccatgaaacataaaaacaactttcctac |
12558 |
T |
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| Q |
217 |
gtaaaaactttgtaatacaaatcaaatgttaatcctccgtcccttcaacttctactctcaactaccatgcaaattccacaccaaacccattttc |
310 |
Q |
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| T |
12559 |
gtaaaaactttgtaatacaaatcaaatgttaatcctccgtcccttcaacttctactctcaattgccattcaaattccacaccaaacccattttc |
12652 |
T |
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Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 10235631 - 10235924
Alignment:
| Q |
17 |
atatcgtcatttaaaaccttagatagaagtacaacccttattcaaatccgggtaattagacaacaaaactttgtcgacattagatagttagacagcttca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10235631 |
atatcgtcatttaaaaccttagatagaagtacaacccttattcaaatccgggtaattagacaacaaaactttgtcgacattagatagttagacagcttca |
10235730 |
T |
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| Q |
117 |
ctttgcttggatggataactaacctaatctaacactttcctcatgtggctgttcctagtacgaaccaaagtcccatgaaacataaaaacaactttcctac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10235731 |
ctttgcttggatggataactaacctaatctaacactttcctcatgtggctgttcctagtacgaaccaaagtcccatgaaacataaaaacaactttcctac |
10235830 |
T |
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| Q |
217 |
gtaaaaactttgtaatacaaatcaaatgttaatcctccgtcccttcaacttctactctcaactaccatgcaaattccacaccaaacccattttc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| |
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| T |
10235831 |
gtaaaaactttgtaatacaaatcaaatgttaatcctccgtcccttcaacttctactctcaattgccattcaaattccacaccaaacccattttc |
10235924 |
T |
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