View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16155_low_16 (Length: 268)
Name: NF16155_low_16
Description: NF16155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16155_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 48175176 - 48174937
Alignment:
| Q |
18 |
aagacaataaataatggaggatcatgagtcacgttgggttgaaaagatacctacgggcttgtgcatgtgtttgttttgtacccttgtgaatgtttaaata |
117 |
Q |
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| T |
48175176 |
aagacaaaaaataatggaggatcatgagtcacgttgggttgaaaagatacctacgggcttgtgcatgtgtttgttttgtacccttgtgaatgtttaaata |
48175077 |
T |
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| Q |
118 |
taaagtttaggtgaggtatataattaagtgcatgtaccccaaaatcgagaagcacnnnnnnnttccattatgcatcctattcctaacttcctgagggcta |
217 |
Q |
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| T |
48175076 |
taaagtttaggtgaggtatataattaagtgcatgtaccccaaaatcgagaagcacaaaaaaattccattatgcatcctattcctaacttcctgagggcta |
48174977 |
T |
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| Q |
218 |
tgcacgattgaacataacttagatactataagcacttctt |
257 |
Q |
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| T |
48174976 |
tgcacgattgaacataacttagatactataagcgcttctt |
48174937 |
T |
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