View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16155_low_3 (Length: 536)
Name: NF16155_low_3
Description: NF16155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16155_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 521
Target Start/End: Complemental strand, 520431 - 519948
Alignment:
| Q |
16 |
atgtttttgtttacctttccaaaacgatagatagaacgctcaaccaagaagcaaacaaagaccatgacagtaacaacggaggcaactgaatatgtaggtg |
115 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
520431 |
atgtttttgtttacctttccaaaacggtagatagaacgctcaaccaagaagcaaacaaagaccatgacagtaacaacggaggcaactgaatatgtaggtg |
520332 |
T |
|
| Q |
116 |
tctcagctagagaacgagcttgctccacaacatgttccattataatatttcttcttattcttacatcaacagaacacagtctttagttcattaaaatgaa |
215 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
520331 |
tctcagctagagaacgaccttgctccacagcatgttccattataatatttcttctta------catcaacagaacacagtctttagttcattaaaatgaa |
520238 |
T |
|
| Q |
216 |
gagcagatagatgggatccaggaaggaaaaagagaagttcaatctgagagtgttttgttttatatgattaatt-aatttagttgaaaggtgcagtgcatg |
314 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
520237 |
gagcagat----gggatccaggaaggaaaaagagaagctcaatctgagagtgttttgttttatatgattaatttaatttagttgaaaggtgca-----ta |
520147 |
T |
|
| Q |
315 |
tgtgtggagagaggacattaattaaaatattgaatatgcaagtatagatcctactcacttttgatttgatcatatatttattaattaatgaaactctttt |
414 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
520146 |
tatgtggagagaggacattaattaaaatattgaatatgcaagtatagatcctactcacttttgatttgatcatatatt----aattaatgaaactctttt |
520051 |
T |
|
| Q |
415 |
gtttatagttattgtcaaagttacgtgcaatgcattggtgctgtctgtgacacacacatggtaccatccatgcacatggagagtttttcattctccaagg |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
520050 |
gtttatagttattgtcaaagttacgtgcaatgcattggtgctgtctgtgacacacacatggta----ccatgcacatggagagtttttcattctccaagg |
519955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University