View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16155_low_9 (Length: 352)
Name: NF16155_low_9
Description: NF16155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16155_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 335
Target Start/End: Original strand, 7458417 - 7458742
Alignment:
| Q |
10 |
catcatcaagaggcaaggctaaaagttctaatacacaacgtggggttatctcttcaagtgtctcatcaatttgtgtttgtaaatccggtgctaggctgct |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458417 |
catcatcaagaggcaaggctaaaagttctaatacacaacgtggggttatctcttcaagtgtctcatcaatttgtgtttgtaaatccggtgctaggctgct |
7458516 |
T |
|
| Q |
110 |
tgccccttcttcctacatgatcaagtgagtcatcagaaagcatattgcaccagaactgcaatttgagtcttcaagctatacacattgttttaatgcacat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458517 |
tgccccttcttcctacatgatcaagtgagtcatcagaaagcatattgcaccagaactgcaatttgagtcttcaagctatacacattgttttaatgcacat |
7458616 |
T |
|
| Q |
210 |
tatatacatgcaaaaataatattgtgtagattttggaaatgcaacagtagtaaagtttaaaaggaatactatacttgacaaatatacaaaatttcaccca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458617 |
tatatacatgcaaaaataatattgtgtagattttggaaatgcaacagtagtaaagtttaaaaggaatactatacttgacaaatatacaaaatttcaccca |
7458716 |
T |
|
| Q |
310 |
agtacttattacttccacatccataa |
335 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
7458717 |
agtacttattacttccacatccataa |
7458742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University