View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16156_high_1 (Length: 270)

Name: NF16156_high_1
Description: NF16156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16156_high_1
NF16156_high_1
[»] chr3 (24 HSPs)
chr3 (145-270)||(8400852-8400977)
chr3 (145-270)||(7417795-7417920)
chr3 (145-270)||(50823695-50823820)
chr3 (145-270)||(50852040-50852165)
chr3 (145-270)||(35198762-35198887)
chr3 (149-270)||(22855888-22856009)
chr3 (145-270)||(34824553-34824678)
chr3 (145-270)||(43334064-43334189)
chr3 (145-270)||(52545318-52545443)
chr3 (163-261)||(29635883-29635981)
chr3 (149-270)||(55468000-55468122)
chr3 (195-270)||(37330617-37330692)
chr3 (177-270)||(22371739-22371832)
chr3 (195-270)||(30534912-30534987)
chr3 (162-270)||(42876229-42876337)
chr3 (195-270)||(37454754-37454829)
chr3 (149-244)||(48077977-48078072)
chr3 (177-269)||(19872494-19872586)
chr3 (145-270)||(50726007-50726132)
chr3 (145-270)||(50786716-50786841)
chr3 (208-270)||(25910676-25910738)
chr3 (164-217)||(41922661-41922714)
chr3 (237-270)||(773666-773699)
chr3 (187-270)||(30203664-30203744)
[»] chr7 (17 HSPs)
chr7 (145-270)||(35109688-35109813)
chr7 (145-270)||(38265247-38265372)
chr7 (145-270)||(16059363-16059488)
chr7 (145-270)||(41151169-41151295)
chr7 (145-270)||(21577108-21577233)
chr7 (145-270)||(34721831-34721956)
chr7 (145-270)||(45278449-45278574)
chr7 (145-270)||(12472118-12472243)
chr7 (145-270)||(18116954-18117079)
chr7 (145-270)||(38405164-38405289)
chr7 (166-270)||(37095220-37095324)
chr7 (161-270)||(245274-245383)
chr7 (145-270)||(48176396-48176522)
chr7 (145-270)||(11216766-11216891)
chr7 (187-270)||(28407547-28407626)
chr7 (149-269)||(23028684-23028804)
chr7 (238-270)||(39234853-39234885)
[»] chr2 (25 HSPs)
chr2 (145-270)||(45136980-45137105)
chr2 (145-270)||(6672803-6672928)
chr2 (145-270)||(40156037-40156162)
chr2 (145-270)||(17136384-17136509)
chr2 (145-270)||(36836339-36836464)
chr2 (145-270)||(25987671-25987797)
chr2 (145-270)||(2754061-2754186)
chr2 (149-270)||(10745242-10745363)
chr2 (149-270)||(21637898-21638019)
chr2 (145-270)||(44650390-44650515)
chr2 (145-270)||(5039417-5039542)
chr2 (149-270)||(36380142-36380263)
chr2 (173-270)||(558449-558546)
chr2 (151-268)||(3200884-3201001)
chr2 (149-270)||(26690155-26690276)
chr2 (145-268)||(7860158-7860281)
chr2 (150-269)||(33066592-33066711)
chr2 (145-270)||(2357086-2357210)
chr2 (54-136)||(9826340-9826423)
chr2 (149-270)||(30372690-30372811)
chr2 (181-266)||(21487181-21487266)
chr2 (149-270)||(13047166-13047282)
chr2 (15-76)||(9826431-9826492)
chr2 (234-270)||(2098836-2098872)
chr2 (194-270)||(4553568-4553644)
[»] chr1 (17 HSPs)
chr1 (145-270)||(30054452-30054577)
chr1 (149-270)||(30370070-30370191)
chr1 (145-270)||(20014455-20014580)
chr1 (145-270)||(45324003-45324128)
chr1 (166-270)||(22024121-22024225)
chr1 (149-270)||(21090116-21090237)
chr1 (149-270)||(12025182-12025303)
chr1 (145-270)||(30850850-30850975)
chr1 (145-270)||(4573376-4573501)
chr1 (177-270)||(14498089-14498182)
chr1 (194-270)||(35371755-35371831)
chr1 (161-270)||(33763264-33763373)
chr1 (174-270)||(33762550-33762646)
chr1 (160-268)||(44438562-44438670)
chr1 (207-270)||(35618034-35618097)
chr1 (220-269)||(17015192-17015241)
chr1 (145-192)||(15034452-15034499)
[»] chr8 (20 HSPs)
chr8 (150-270)||(32296649-32296769)
chr8 (145-270)||(19723308-19723433)
chr8 (145-270)||(29767185-29767308)
chr8 (145-270)||(4840137-4840262)
chr8 (149-270)||(11404002-11404123)
chr8 (166-270)||(17095568-17095672)
chr8 (145-269)||(22711506-22711630)
chr8 (181-270)||(36261679-36261768)
chr8 (177-260)||(21355004-21355087)
chr8 (145-224)||(27881044-27881123)
chr8 (145-224)||(28021225-28021304)
chr8 (151-270)||(28739571-28739690)
chr8 (191-270)||(11909433-11909512)
chr8 (151-270)||(30682842-30682960)
chr8 (149-270)||(41553286-41553407)
chr8 (181-270)||(43288105-43288194)
chr8 (163-247)||(24475029-24475113)
chr8 (145-270)||(11610277-11610402)
chr8 (220-270)||(27879570-27879620)
chr8 (220-270)||(28019751-28019801)
[»] scaffold0021 (1 HSPs)
scaffold0021 (149-270)||(107701-107822)
[»] chr5 (7 HSPs)
chr5 (145-270)||(17064320-17064445)
chr5 (145-270)||(20983013-20983138)
chr5 (145-270)||(37976543-37976672)
chr5 (189-270)||(41910865-41910946)
chr5 (195-270)||(31673877-31673951)
chr5 (165-266)||(5009430-5009531)
chr5 (237-270)||(35237069-35237102)
[»] chr4 (24 HSPs)
chr4 (145-270)||(46494408-46494533)
chr4 (145-270)||(51066490-51066615)
chr4 (145-270)||(51713975-51714100)
chr4 (149-270)||(36192542-36192663)
chr4 (145-270)||(30970394-30970519)
chr4 (145-270)||(32139161-32139286)
chr4 (176-270)||(55231715-55231809)
chr4 (145-270)||(7173595-7173720)
chr4 (145-250)||(8740445-8740550)
chr4 (145-270)||(39863788-39863913)
chr4 (145-264)||(50905745-50905864)
chr4 (177-270)||(29576444-29576537)
chr4 (145-270)||(47627003-47627130)
chr4 (204-270)||(22304101-22304167)
chr4 (187-267)||(676767-676847)
chr4 (181-268)||(4080564-4080651)
chr4 (163-270)||(2570216-2570323)
chr4 (174-265)||(41523423-41523514)
chr4 (159-250)||(50399672-50399763)
chr4 (149-270)||(2294726-2294841)
chr4 (159-270)||(51279043-51279154)
chr4 (145-251)||(22423373-22423479)
chr4 (212-269)||(37990606-37990663)
chr4 (234-270)||(51066240-51066276)
[»] chr6 (9 HSPs)
chr6 (145-270)||(35163760-35163885)
chr6 (173-270)||(20685350-20685447)
chr6 (145-270)||(19686837-19686962)
chr6 (173-270)||(17948705-17948802)
chr6 (175-270)||(15070152-15070247)
chr6 (145-251)||(2711763-2711869)
chr6 (145-270)||(14505534-14505658)
chr6 (145-202)||(14496349-14496406)
chr6 (166-251)||(24336633-24336718)
[»] scaffold0691 (1 HSPs)
scaffold0691 (150-255)||(6994-7099)


Alignment Details
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 8400852 - 8400977
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  8400852 aatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 8400951  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  8400952 cttggactggggcaccatcccctcac 8400977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 7417795 - 7417920
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||    
T  7417795 aatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttcactgc 7417894  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  7417895 cttggactggggcaccatcccctcac 7417920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 50823695 - 50823820
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||| ||||||||||| || | ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  50823695 aatccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 50823794  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  50823795 cttggactggggcaccatcccctcac 50823820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 50852165 - 50852040
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||| ||||||||||| || | ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  50852165 aatccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 50852066  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  50852065 cttggactggggcaccatcccctcac 50852040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 35198762 - 35198887
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||||||||||||||  ||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  35198762 aatccgagagaacccgggttcgagccccactaatgcctttgcagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgc 35198861  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    |||||||||| |||||||||||||||    
T  35198862 cttggactggagcaccatcccctcac 35198887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 22855888 - 22856009
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    ||||||||||| ||||||||||| ||||||| ||||| |||||| |||||||||||||||||||||||||||||| ||||  || |||||||||||||||    
T  22855888 cgagagaacccaggttcgagccccgctagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttaagcccaaaggtcttccctgccttg 22855987  T
Q  249 gactggggcaccatcccctcac 270  Q
    |||||| |||||||||||||||    
T  22855988 gactggagcaccatcccctcac 22856009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 34824553 - 34824678
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||| | ||||||| || | |||||||||||||||||| |||||||||||| ||||||||||||||||||| || ||| |||||||| ||    
T  34824553 aatccgagagaacctgagttcgagtcccgttagtgcctttgaagggaggtaaatgtaattatctttgtaagtgctctttgatcccgaaggtcttcccggc 34824652  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  34824653 cttggactggggcaccatcccctcac 34824678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 43334189 - 43334064
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||| |||||||||| ||||||| ||| | |||||| ||||||||| ||| |||||||||||| |||||||| ||| |||||||||||    
T  43334189 aatccgagagaacccgagttcgagccccgctagtgtcttgggagggaggtaaatgtaaatacttttgtaagtgctatttgagcccgaaggtcttccctgc 43334090  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    |||||||||||| |||||||||||||    
T  43334089 cttggactggggtaccatcccctcac 43334064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 52545318 - 52545443
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||| ||  ||||||||||||| |||||||||||| ||||||| ||||||||| ||| |||||||||  |||||||||| ||| |||||||||||    
T  52545318 aatccgagaaaattcgggttcgagccccgctagtgcctttaaagggaggtaaatgtaaatacttttgtaagtagtctttgagcccgaaggtcttccctgc 52545417  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  52545418 cttggactggggcaccatcccctcac 52545443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 29635883 - 29635981
Alignment:
Q  163 ttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcacca 261  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  29635883 ttcgagcctcgctagtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttaagcccgaatgtcttccctgccttggagtggggcacca 29635981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 55468000 - 55468122
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgag-ccagaatgtcttccctgcctt 247  Q
    |||||||| ||||||||||||||  ||| ||| |||| |||||| ||||||||| ||||||||||||||||||||||| || ||| |||||| |||||||    
T  55468000 cgagagaatccgggttcgagccccactaatgcgtttggagggaggtaaatgtaaatacctttgtaagtgctctttgagccccgaaggtcttctctgcctt 55468099  T
Q  248 ggactggggcaccatcccctcac 270  Q
    |||||||||||||||||||||||    
T  55468100 ggactggggcaccatcccctcac 55468122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 37330692 - 37330617
Alignment:
Q  195 aaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||    
T  37330692 aaatgtaattacctttgtaagtgctctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcac 37330617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 22371832 - 22371739
Alignment:
Q  177 gtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||| || |||  |||||||||| || ||||||||||||||||||||||    
T  22371832 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaagatcttccctgctttagactggggcaccatcccctcac 22371739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 30534987 - 30534912
Alignment:
Q  195 aaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||| |||||||||||||    
T  30534987 aaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttggactggggtaccatcccctcac 30534912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 270
Target Start/End: Original strand, 42876229 - 42876337
Alignment:
Q  162 gttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcacca 261  Q
    ||||||||||  |||||| ||||  | |||| |||||||||||||||||||||||||||||||| |  |||||||||||||  |||||||| ||||||||    
T  42876229 gttcgagcccgactagtgtctttagatggaggtaaatgtaattacctttgtaagtgctctttgaacttgaatgtcttccctatcttggactagggcacca 42876328  T
Q  262 tcccctcac 270  Q
    ||| |||||    
T  42876329 tcctctcac 42876337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 37454829 - 37454754
Alignment:
Q  195 aaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||||||| |||| || |||||||||||||||||||    
T  37454829 aaatataattacctttgtaagtgctctttgagcccgaaggtcttccctaccttagattggggcaccatcccctcac 37454754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 48078072 - 48077977
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||| ||||||||||||   |||||||||||| ||| || ||||||||| || |||||||||||||||||||||| ||| |||||||||||    
T  48078072 cgagagaactcgggttcgagcctcactagtgcctttggaggaaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttccctgc 48077977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 269
Target Start/End: Complemental strand, 19872586 - 19872494
Alignment:
Q  177 gtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctca 269  Q
    ||||||||| ||| || ||||  ||||||||||||||||| ||||||||  | ||| |||||||||| |||||||||||||||||||||||||    
T  19872586 gtgcctttggaggaaggtaaaattaattacctttgtaagtactctttgaatccgaaggtcttccctgtcttggactggggcaccatcccctca 19872494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 50726132 - 50726007
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||  ||||||||||||| | ||||| ||||| ||| || ||||| ||||||| ||||||||| || ||||||   ||| ||||||||| |    
T  50726132 aatccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaaagtcttccctac 50726033  T
Q  245 cttggactggggcaccatcccctcac 270  Q
     ||||| |||||||||||||| ||||    
T  50726032 tttggattggggcaccatcccttcac 50726007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 50786716 - 50786841
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||  ||||||||||||| | ||||| ||||| ||| || ||||| ||||||| ||||||||| || ||||||   ||| ||||||||| |    
T  50786716 aatccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaaagtcttccctac 50786815  T
Q  245 cttggactggggcaccatcccctcac 270  Q
     ||||| |||||||||||||| ||||    
T  50786816 tttggattggggcaccatcccttcac 50786841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 25910738 - 25910676
Alignment:
Q  208 tttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||| | |||  ||||||||||||||||||| ||||||||||||||||    
T  25910738 tttgtaagtgctctttgagtccgaagatcttccctgccttggactgaggcaccatcccctcac 25910676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 41922714 - 41922661
Alignment:
Q  164 tcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtg 217  Q
    |||||||||| || |||||||||||||||||||||| || ||| ||||||||||    
T  41922714 tcgagccctgttattgcctttgaagggagataaatgcaaatacatttgtaagtg 41922661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 773666 - 773699
Alignment:
Q  237 ttccctgccttggactggggcaccatcccctcac 270  Q
    |||||| |||||||||||||||||||||||||||    
T  773666 ttcccttccttggactggggcaccatcccctcac 773699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 30203744 - 30203664
Alignment:
Q  187 agggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||| |||||||||  |||||||||| || |||||||||  ||| || |||| || |||| |||||||||||||||||||||    
T  30203744 agggaggtaaatgtaa--acctttgtaaatgttctttgagctcgaaggttttcc-tgtcttgaactggggcaccatcccctcac 30203664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 35109688 - 35109813
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||||||||||||||  |||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  35109688 aatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 35109787  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  35109788 cttggactggggcaccatcccctcac 35109813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 38265372 - 38265247
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||| |||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  38265372 aatccgagagaacctgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 38265273  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  38265272 cttggactggggcaccatcccctcac 38265247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 16059488 - 16059363
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||| |    
T  16059488 aatccgagagaacccgggttcgagccccgctagtgcctttgcagggaggtaaatgtaattacctttgtaagtgctctctgagcccgaaggtcttccctac 16059389  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  16059388 cttggactggggcaccatcccctcac 16059363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 41151169 - 41151295
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattaccttt-gtaagtgctctttgagccagaatgtcttccctg 243  Q
    ||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||| |||||||||||||||||| ||| ||||||||||    
T  41151169 aatccgagagaacccgggttcgagccccgctagtgtctttggagggaggtaaatgtaattaccttttgtaagtgctctttgagcccgaaggtcttccctg 41151268  T
Q  244 ccttggactggggcaccatcccctcac 270  Q
    |||||||||||||||||||||||||||    
T  41151269 ccttggactggggcaccatcccctcac 41151295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 21577233 - 21577108
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||||||||||||||  ||| |||||||| |||||| ||||||||| ||||||||||||||||||||||| | ||| |||||||||||    
T  21577233 aatccgagagaacccgggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagtccgaaggtcttccctgc 21577134  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  21577133 cttggactggggcaccatcccctcac 21577108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 34721831 - 34721956
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||| ||| ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| | |||||||||    
T  34721831 aatccgagagaacccggattcaagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggacttccctgc 34721930  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    |||||||| |||||||||||||||||    
T  34721931 cttggactcgggcaccatcccctcac 34721956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 45278449 - 45278574
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||  |||||||||||| ||||||||||||||||| | || |||||||||||||||    
T  45278449 aatccgagataacccgggttcgagccccgctagtgcctttgaagggaagtaaatgtaattatctttgtaagtgctctttaaacccgaatgtcttccctgc 45278548  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    |||||||||| |||||||||||||||    
T  45278549 cttggactggagcaccatcccctcac 45278574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 12472118 - 12472243
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||||||||||||||  |||||||||||| |||||| ||||| ||||||||||||||||||||||||||||  ||| ||||||||||     
T  12472118 aatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcacgaaggtcttccctgt 12472217  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    |||||||||||| |||||||||||||    
T  12472218 cttggactggggtaccatcccctcac 12472243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 18117079 - 18116954
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||  ||||||||||||  |||||| |||||||||||||||||||| ||||||||||||   |||  ||||||||||    
T  18117079 aatccgagagaacccgggttcgagccacgctagtgcctttagagggaggtaaatgtaattacctttgtaggtgctctttgaggtcgaagatcttccctgc 18116980  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  18116979 cttggactggggcaccatcccctcac 18116954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 38405289 - 38405164
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||  || |||||||||  ||||||||||||| |||||| |||||||||||| ||||||||||||||||||| || ||| |||||||||||    
T  38405289 aatccgagagaattcgagttcgagcctcgctagtgcctttggagggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtcttccctgc 38405190  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  38405189 cttggactggggcaccatcccctcac 38405164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 166 - 270
Target Start/End: Complemental strand, 37095324 - 37095220
Alignment:
Q  166 gagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatccc 265  Q
    |||||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  37095324 gagccccgctagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatccc 37095225  T
Q  266 ctcac 270  Q
    |||||    
T  37095224 ctcac 37095220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 245383 - 245274
Alignment:
Q  161 ggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcacc 260  Q
    ||||||||||| ||||||||| ||| |||||| |||||||||||| ||||||||  |||||||||||| ||| |||||||||||||||||||||||||||    
T  245383 ggttcgagccccgctagtgcccttggagggaggtaaatgtaattatctttgtaaacgctctttgagcccgaaggtcttccctgccttggactggggcacc 245284  T
Q  261 atcccctcac 270  Q
    ||||||||||    
T  245283 atcccctcac 245274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 48176396 - 48176522
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccct-g 243  Q
    |||||||||||| |||||||||||||| ||||||||||||| | |||| ||||||||| ||| |||||||||| | |||||||| ||| || ||||||      
T  48176396 aatccgagagaatccgggttcgagccccgctagtgcctttggaaggaggtaaatgtaaatacttttgtaagtgttttttgagccggaaggttttccctcc 48176495  T
Q  244 ccttggactggggcaccatcccctcac 270  Q
    |||||||||||||||||||||||||||    
T  48176496 ccttggactggggcaccatcccctcac 48176522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 11216766 - 11216891
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||| ||||||||||||||||||||||   ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| |||||| || |    
T  11216766 aatctgagagaacccgggttcgagccccattagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttctctac 11216865  T
Q  245 cttggactggggcaccatcccctcac 270  Q
     ||||||| ||||| ||| |||||||    
T  11216866 tttggactagggcatcattccctcac 11216891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 28407547 - 28407626
Alignment:
Q  187 agggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||| ||||||||| ||| ||||||||||||||||||||| ||| ||    |  |||||||| |||||||||||||||||||    
T  28407547 agggaggtaaatgtaaatacttttgtaagtgctctttgagcccgaaggt----caagccttggattggggcaccatcccctcac 28407626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 269
Target Start/End: Original strand, 23028684 - 23028804
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||| |||||||||| | |  ||| |||||||  |||||  ||||||||||||||||| |||||| | ||||| || ||| | ||||||| ||||     
T  23028684 cgagagaatccgggttcgaactcctctaatgcctttagagggatgtaaatgtaattacctttataagtgttttttgaacccgaaggccttccctacctta 23028783  T
Q  249 gactggggcaccatcccctca 269  Q
    ||||| | |||||||| ||||    
T  23028784 gactgagacaccatcctctca 23028804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 39234853 - 39234885
Alignment:
Q  238 tccctgccttggactggggcaccatcccctcac 270  Q
    |||||||| ||||||||||||||||||||||||    
T  39234853 tccctgccatggactggggcaccatcccctcac 39234885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 45137105 - 45136980
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  45137105 aatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 45137006  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||| ||||    
T  45137005 cttggactggggcaccatcccttcac 45136980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 6672928 - 6672803
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||| | |||||||||||| ||| |||||||||||    
T  6672928 aatccgagagaacccgggttcaagccccgctagtgcctttggagggaggtaaatgtaattacctttgtacgcgctctttgagcccgaaggtcttccctgc 6672829  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  6672828 cttggactggggcaccatcccctcac 6672803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 40156037 - 40156162
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||| |||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||| |    
T  40156037 aatccgagagaatccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctac 40156136  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    |||| |||||||||||||||||||||    
T  40156137 cttgaactggggcaccatcccctcac 40156162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 17136384 - 17136509
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||| |||||||||||||||||||||| | ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| |||||||| ||    
T  17136384 aatctgagagaacccgggttcgagccccgttagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccccgc 17136483  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  17136484 cttggactggggcaccatcccctcac 17136509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 36836464 - 36836339
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||| ||||||| || ||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||  ||||||||||    
T  36836464 aatccgagagaacccgagttcgagtcccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgc 36836365  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  36836364 cttggactggggcaccatcccctcac 36836339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 25987797 - 25987671
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtc-ttccctg 243  Q
    ||||||||||||| ||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||| | ||| ||| |||||||    
T  25987797 aatccgagagaactcgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaaggtctttccctg 25987698  T
Q  244 ccttggactggggcaccatcccctcac 270  Q
    |||||| ||||||||||||||||||||    
T  25987697 ccttggtctggggcaccatcccctcac 25987671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 2754186 - 2754061
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||| |||||| ||  ||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||  ||| |||||||||||    
T  2754186 aatccgagagaacccggattcgagtcccactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgc 2754087  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  2754086 cttggactggggcaccatcccctcac 2754061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 10745363 - 10745242
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    ||||||||||||||| ||||||| ||||||||||||  |||||| |||||||||||| ||||||||||||||||||| || ||| || ||||||||||||    
T  10745363 cgagagaacccgggtccgagccccgctagtgcctttagagggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtattccctgccttg 10745264  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||    
T  10745263 gactggggcaccatcccctcac 10745242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 21637898 - 21638019
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||||||||||| |||||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||  || |||||| ||||||||    
T  21637898 cgagagaacccgggtttgagccccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccaaaggtcttctctgccttg 21637997  T
Q  249 gactggggcaccatcccctcac 270  Q
    |||| |||||||||||||||||    
T  21637998 gactagggcaccatcccctcac 21638019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 44650390 - 44650515
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||  ||||||| | | ||||||||||| |||||| ||||||||||||||||||||||||||||||||| | |||  ||||||||||    
T  44650390 aatccgagagaacccgatttcgagctccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaagatcttccctgc 44650489  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||| ||||||||||||||||||    
T  44650490 cttggaccggggcaccatcccctcac 44650515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 5039417 - 5039542
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||| ||||||||||| | |||||||| |||  |||||| |||| |||||||||||||||||||||||||||||| |||  |||||||| |    
T  5039417 aatccgagagaactcgggttcgagctccgctagtgcttttagagggaggtaaacgtaattacctttgtaagtgctctttgagcccgaagatcttccctac 5039516  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    |||||||| |||||||||||||||||    
T  5039517 cttggactagggcaccatcccctcac 5039542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 36380263 - 36380142
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    ||||| ||| |||||| || ||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||    
T  36380263 cgagaaaactcgggtttgaaccccgctagtgcctttggagggaggtaaatgtaattccctttgtaagtgctctttgagcccgaaggtcttccctaccttg 36380164  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||| ||||||||||||||||    
T  36380163 gactgaggcaccatcccctcac 36380142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 558546 - 558449
Alignment:
Q  173 gctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| |||| ||||||||| ||||||| |||||||||||||||||||    
T  558546 gctagtgcctttggagggaggtaaatgtaattacttttgtaagtgctctttgagctagaaggtcttcccttccttggaatggggcaccatcccctcac 558449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 268
Target Start/End: Original strand, 3200884 - 3201001
Alignment:
Q  151 agagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttgga 250  Q
    |||||||| || ||||||||  ||||||||||||| |||||| |||||||||||||||||||||||| |||||||||| |||  ||||| ||||||| ||    
T  3200884 agagaacctggattcgagcctcgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaagatcttctctgccttaga 3200983  T
Q  251 ctggggcaccatcccctc 268  Q
    ||||||||||||| ||||    
T  3200984 ctggggcaccatctcctc 3201001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 26690155 - 26690276
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||| | ||||||||| || |||||||| |||| |||||| |||||||||||||||||||||||| |||||| |   ||| |||||||||||||||    
T  26690155 cgagagaatctgggttcgagtcccgctagtgcttttggagggaggtaaatgtaattacctttgtaagtgatctttgtgttcgaaggtcttccctgccttg 26690254  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||| ||||||||||||||||    
T  26690255 gactgaggcaccatcccctcac 26690276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 268
Target Start/End: Complemental strand, 7860281 - 7860158
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||| ||||| |||||| ||||||||||||| |||||| ||||||||  ||| |||||||||| |||||||||| |||  | ||| ||||    
T  7860281 aatccgagagaacctgggtttgagccccgctagtgcctttggagggaggtaaatgtacatacatttgtaagtgttctttgagcccgaagattttctctgc 7860182  T
Q  245 cttggactggggcaccatcccctc 268  Q
    ||||||||| |||| |||||||||    
T  7860181 cttggactgaggcatcatcccctc 7860158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 269
Target Start/End: Original strand, 33066592 - 33066711
Alignment:
Q  150 gagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttgg 249  Q
    ||||||| ||||||||||||    |||||| ||||| || ||| ||||||||| || |||||||||||||||||||||| ||| |||||| || ||||||    
T  33066592 gagagaatccgggttcgagcttcactagtgtctttggagagaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttctctaccttgg 33066691  T
Q  250 actggggcaccatcccctca 269  Q
    ||||||||||||||||||||    
T  33066692 actggggcaccatcccctca 33066711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 2357210 - 2357086
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||  |  ||||| |||||| |||||| ||||||||| |||| |||||| |||| ||||||   ||| ||||||| |||    
T  2357210 aatccgagagaacccgggttcgagttccactagtacctttggagggaggtaaatgtaaataccattgtaaatgct-tttgagttcgaaggtcttccatgc 2357112  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  2357111 cttggactggggcaccatcccctcac 2357086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 9826423 - 9826340
Alignment:
Q  54 agtatattcatttattgttttttaaaaggtgttatcttagcggtgaaagttttacattgtaac--caaatgatatagtttaaatt 136  Q
    |||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  9826423 agtatattcatttattattttt-aaaaggtgttattttagcggtgaaagttttacattgtaacctcaaatgatatagtttaaatt 9826340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 30372811 - 30372690
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    ||||||| || |||||||||| | ||||||||||||| | |||| ||||||||| || |||||| ||||||||||||||| ||| ||||||| |||||||    
T  30372811 cgagagatcctgggttcgagctccgctagtgcctttggaaggaggtaaatgtaaatatctttgttagtgctctttgagcccgaaggtcttccatgccttg 30372712  T
Q  249 gactggggcaccatcccctcac 270  Q
     ||||||| ||||| |||||||    
T  30372711 aactggggtaccataccctcac 30372690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 21487181 - 21487266
Alignment:
Q  181 ctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccc 266  Q
    ||||| |||||| ||||||||| ||  ||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||    
T  21487181 ctttggagggaggtaaatgtaaatatttttgtaagtgctctttgagcccgaaagtcttccctgccttagactggggcaccatcccc 21487266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 13047282 - 13047166
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||| |||||||||||||| ||  ||  ||||| |||||| ||||| ||||||||||   ||||||||||||||||  ||  ||||||||||||||    
T  13047282 cgagagaatccgggttcgagccccgcatgt--ctttggagggaggtaaatataattacctt---aagtgctctttgagcccaaagatcttccctgccttg 13047188  T
Q  249 gactggggcaccatcccctcac 270  Q
    |||||| |||||||||||||||    
T  13047187 gactggagcaccatcccctcac 13047166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 9826492 - 9826431
Alignment:
Q  15 gtgagatgaacaaaatgacttataattttagatgaagtgagtatattcatttattgtttttt 76  Q
    |||| ||||||||||| |||||||||||||||  |||||||||||||||||| || ||||||    
T  9826492 gtgaaatgaacaaaataacttataattttagacaaagtgagtatattcattttttttttttt 9826431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 2098872 - 2098836
Alignment:
Q  234 gtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||||||||||||||||||||||||||||||||||    
T  2098872 gtcttccctgccttggactggggcaccatcccctcac 2098836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 4553644 - 4553568
Alignment:
Q  194 taaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||| ||| ||| ||||||||| ||||||||| | | | |||||| ||| ||| ||||||||||||||||||||||    
T  4553644 taaatataaatacatttgtaagtactctttgagtccggaggtcttctctgtcttagactggggcaccatcccctcac 4553568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 30054577 - 30054452
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| ||| |||||||||||    
T  30054577 aatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgc 30054478  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  30054477 cttggactggggcaccatcccctcac 30054452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 30370191 - 30370070
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||| ||||||||||||||  |||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  30370191 cgagagaatccgggttcgagccccactagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 30370092  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||    
T  30370091 gactggggcaccatcccctcac 30370070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 20014455 - 20014580
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||||||||||| || |||||| |||||| |||||| ||||||||||||| ||||||| ||||||||||||| ||| |||||||||||    
T  20014455 aatccgagagaacccgggttcgagtcccgctagtacctttggagggaggtaaatgtaattacatttgtaaatgctctttgagcctgaaggtcttccctgc 20014554  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||| ||||||||||||||||    
T  20014555 cttggactgaggcaccatcccctcac 20014580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 45324003 - 45324128
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||| |||||| ||||| |||||||| |||| |||||| ||||||||| ||||||||||||||||| ||||||| ||| |||||||||||    
T  45324003 aatccgagagaacctgggttccagccccgctagtgcttttggagggaggtaaatgtaaatacctttgtaagtgctccttgagcccgaaggtcttccctgc 45324102  T
Q  245 cttggactggggcaccatcccctcac 270  Q
     |||||||||||||||||||||||||    
T  45324103 tttggactggggcaccatcccctcac 45324128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 22024121 - 22024225
Alignment:
Q  166 gagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatccc 265  Q
    |||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||    
T  22024121 gagccctgctagtgcctttggatggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttctctgccttggactggggcaccatccc 22024220  T
Q  266 ctcac 270  Q
    |||||    
T  22024221 ctcac 22024225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 21090116 - 21090237
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    ||||||||  ||||||||||||| ||||||||| ||| |||||| ||||||||| ||| ||||||| ||||||||||||| ||| |||||||||||||||    
T  21090116 cgagagaattcgggttcgagccccgctagtgccgttggagggaggtaaatgtaaatacatttgtaaatgctctttgagcccgaaggtcttccctgccttg 21090215  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||    
T  21090216 gactggggcaccatcccctcac 21090237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 12025182 - 12025303
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||||| ||||||||||||   ||||||||||| ||| || ||||||||||||||||||||||| || |||||||| ||| |||||||||||||||    
T  12025182 cgagagaacctgggttcgagccccattagtgcctttggaggaaggtaaatgtaattacctttgtaagtactatttgagcccgaaggtcttccctgccttg 12025281  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||||||||||| ||||||||    
T  12025282 gactggggcaccaccccctcac 12025303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 30850975 - 30850850
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||| ||||||||||||| | ||||| ||||| |||||| ||||| ||||| |||||||||||||||||||| || ||| ||||| ||||     
T  30850975 aatccgagagaactcgggttcgagccccgttagtgtctttggagggaggtaaatataattgcctttgtaagtgctctttgaacccgaaggtctttcctgt 30850876  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  30850875 cttggactggggcaccatcccctcac 30850850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 4573376 - 4573501
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||||||||||||||  ||| || ||||| |||||| ||||||||| ||||||||||||||||||||||||  ||| ||||||||||     
T  4573376 aatccgagagaacccgggttcgagccccactaatgtctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgt 4573475  T
Q  245 cttggactggggcaccatcccctcac 270  Q
     |||||||| ||||| ||||||||||    
T  4573476 tttggactgaggcactatcccctcac 4573501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 14498182 - 14498089
Alignment:
Q  177 gtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||| |  || |||||||||||||||||||||||| ||||||||||||    
T  14498182 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagaccaaaggtcttccctgccttggactggggcgccatcccctcac 14498089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 35371831 - 35371755
Alignment:
Q  194 taaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  35371831 taaatgtaattacctttgtaagtgctctttgagcccgaagttcttccctgccttggactggggcaccatcccctcac 35371755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 33763373 - 33763264
Alignment:
Q  161 ggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcacc 260  Q
    ||||||||||| ||||||||||||  ||||||  ||||||||||||||||||||||| | |||||||| ||| || |||||||||||| ||||||||| |    
T  33763373 ggttcgagccccgctagtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttgaactggggcatc 33763274  T
Q  261 atcccctcac 270  Q
    ||||||||||    
T  33763273 atcccctcac 33763264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 270
Target Start/End: Complemental strand, 33762646 - 33762550
Alignment:
Q  174 ctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||||||||  ||||||  ||||||||||||||||||||||| | |||||||| ||| || |||||||||||||||||||||| |||||||||||    
T  33762646 ctagtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttggactggggcatcatcccctcac 33762550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 268
Target Start/End: Complemental strand, 44438670 - 44438562
Alignment:
Q  160 gggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcac 259  Q
    |||||||||| | |||| |||||||| |||||| ||||||||||||| |||||||||| ||||| |    ||| ||||||||||||||| ||||||| ||    
T  44438670 gggttcgagctccgctaatgcctttggagggaggtaaatgtaattacttttgtaagtgttctttaaattcgaaggtcttccctgccttgaactggggtac 44438571  T
Q  260 catcccctc 268  Q
    |||||||||    
T  44438570 catcccctc 44438562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 35618034 - 35618097
Alignment:
Q  207 ctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||||||||||||||||||| ||| ||||||| ||| ||||||||||| |||||||||||||    
T  35618034 ctttgtaagtgctctttgagcccgaaggtcttccttgctttggactggggtaccatcccctcac 35618097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 17015192 - 17015241
Alignment:
Q  220 ctttgagccagaatgtcttccctgccttggactggggcaccatcccctca 269  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  17015192 ctttgagcccgaaggtcttccctgctttggactggggcaccatcccctca 17015241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 15034452 - 15034499
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggag 192  Q
    ||||||| ||||||| |||||||||||| |||||||||||| ||||||    
T  15034452 aatccgaaagaacccaggttcgagccctactagtgcctttggagggag 15034499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 150 - 270
Target Start/End: Complemental strand, 32296769 - 32296649
Alignment:
Q  150 gagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttgg 249  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  32296769 gagagaacccgggttcaagccctgctagtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 32296670  T
Q  250 actggggcaccatcccctcac 270  Q
    | |||||||||||||||||||    
T  32296669 attggggcaccatcccctcac 32296649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 19723308 - 19723433
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||  ||  ||||||||||    
T  19723308 aatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccaaagatcttccctgc 19723407  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  19723408 cttggactggggcaccatcccctcac 19723433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 29767185 - 29767308
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||| ||||||||||||| |||||||| |||||||||||||||||||| |||||  ||||||||||||||||| |||||||||| ||| |||||||||||    
T  29767185 aatctgagagaacccggggtcgagccccgctagtgcctttgaagggaggtaaat--aattacctttgtaagtgttctttgagcccgaaggtcttccctgc 29767282  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  29767283 cttggactggggcaccatcccctcac 29767308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 4840137 - 4840262
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| |||||| |||||||||||||||||| |  || |||||||||||    
T  4840137 aatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtcattaccattgtaagtgctctttgagtccaaaggtcttccctgc 4840236  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    |||||||| |||||||||||||||||    
T  4840237 cttggactagggcaccatcccctcac 4840262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 11404002 - 11404123
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||||| |||||||||||  ||||||| ||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||    
T  11404002 cgagagaacctgggttcgagcctcgctagtgtctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 11404101  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||    
T  11404102 gactggggcaccatcccctcac 11404123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 17095568 - 17095672
Alignment:
Q  166 gagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatccc 265  Q
    |||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  17095568 gagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatccc 17095667  T
Q  266 ctcac 270  Q
    |||||    
T  17095668 ctcac 17095672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 145 - 269
Target Start/End: Original strand, 22711506 - 22711630
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||| |||||| ||| ||  ||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| ||||||| |||    
T  22711506 aatccgagagaactcgggtttgagtccaactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccttgc 22711605  T
Q  245 cttggactggggcaccatcccctca 269  Q
    |||||||||||||||||||||||||    
T  22711606 cttggactggggcaccatcccctca 22711630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 36261679 - 36261768
Alignment:
Q  181 ctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||||||||||||    
T  36261679 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttgaactggggcaccatcccctcac 36261768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 21355087 - 21355004
Alignment:
Q  177 gtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcacc 260  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||    
T  21355087 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttccctgccttggactggggcacc 21355004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 27881123 - 27881044
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttg 224  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  27881123 aatctgagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttg 27881044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 28021304 - 28021225
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttg 224  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  28021304 aatctgagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttg 28021225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 151 - 270
Target Start/End: Complemental strand, 28739690 - 28739571
Alignment:
Q  151 agagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttgga 250  Q
    |||||||| |||||| |||||  |||||||||||| ||| |  ||||||||| ||||||||||||||||||||||||| ||| ||||||||| |||||||    
T  28739690 agagaacctgggttcaagccccactagtgcctttggaggaaagtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctaccttgga 28739591  T
Q  251 ctggggcaccatcccctcac 270  Q
    |||  |||||||||||||||    
T  28739590 ctgcagcaccatcccctcac 28739571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 11909512 - 11909433
Alignment:
Q  191 agataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||||||||| ||||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  11909512 agataaatgtaaatacctttctaagtgctctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcac 11909433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 151 - 270
Target Start/End: Original strand, 30682842 - 30682960
Alignment:
Q  151 agagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttgga 250  Q
    ||||| |||| ||||||||||  || ||||||||| || ||||||||||||| ||| |||||||||| |||||||||| |||  ||||||||||||||||    
T  30682842 agagagcccgtgttcgagccccactggtgcctttggagagagataaatgtaaatacttttgtaagtgttctttgagcccgaagatcttccctgccttgga 30682941  T
Q  251 ctggggcaccatcccctcac 270  Q
    || |||||||||||||||||    
T  30682942 ct-gggcaccatcccctcac 30682960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 41553286 - 41553407
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||||||| ||||||| ||  ||| || ||||| ||| |  ||||||||| |||||||||||||| |||||||||  ||| ||||||||||||||     
T  41553286 cgagagaacccgagttcgagtcccactaatgtctttggaggaacgtaaatgtaaatacctttgtaagtgttctttgagctcgaaggtcttccctgcctta 41553385  T
Q  249 gactggggcaccatcccctcac 270  Q
    |||||| |||||||||||||||    
T  41553386 gactggagcaccatcccctcac 41553407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 43288105 - 43288194
Alignment:
Q  181 ctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||| |||||| ||||||||||||||||||||| || | |||||| | ||| ||||||||||||||||||||| |||||||||||||||    
T  43288105 ctttggagggaggtaaatgtaattacctttgtaattgatttttgagtccgaaggtcttccctgccttggactggagcaccatcccctcac 43288194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 24475113 - 24475029
Alignment:
Q  163 ttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgcctt 247  Q
    ||||||| | ||||||||||||| |||||| ||||||||| |||||||||||||| |||||||||| ||| ||||| ||||||||    
T  24475113 ttcgagctccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgttctttgagcccgaaggtctttcctgcctt 24475029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 11610277 - 11610402
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||| | ||| ||||||||  ||||||||||||| ||  || ||||| ||| || ||||||||||||| ||| |||| ||| ||||| | |      
T  11610277 aatccgagagatctcggattcgagcctcgctagtgcctttggagaaaggtaaatataaatatctttgtaagtgctgtttaagcccgaaggtcttacttat 11610376  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  11610377 cttggactggggcaccatcccctcac 11610402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 27879620 - 27879570
Alignment:
Q  220 ctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||| |||  |||||||| |||||||||||||||||||||||||||    
T  27879620 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcac 27879570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 28019801 - 28019751
Alignment:
Q  220 ctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||| |||  |||||||| |||||||||||||||||||||||||||    
T  28019801 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcac 28019751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 107822 - 107701
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||    
T  107822 cgagagaacccgagttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctaccctgccttg 107723  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||    
T  107722 gactggggcaccatcccctcac 107701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 17064320 - 17064445
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||  ||||||||||||| |||||| ||||||||| |||||||||||||||||||| |||| ||| |||||||||||    
T  17064320 aatccgagagaacccgggttcgagcctcgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttaagcccgaaggtcttccctgc 17064419  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  17064420 cttggactggggcaccatcccctcac 17064445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 20983138 - 20983013
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||| |||||| |||||||||||||| ||||||||||| | || ||| |||||| |||||| ||||||||||||||||||||| ||| |||||||||||    
T  20983138 aatccaagagaatccgggttcgagccccgctagtgccttcggagagaggtaaatgcaattacatttgtaagtgctctttgagcccgaaagtcttccctgc 20983039  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  20983038 cttggactggggcaccatcccctcac 20983013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 37976543 - 37976672
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaat----gtaattacctttgtaagtgctctttgagccagaatgtcttcc 240  Q
    |||||||||||||| |||||||||||| |||||||| ||||||||||| |||||    |||| |||||||||||||||| |||||||| ||| || || |    
T  37976543 aatccgagagaacctgggttcgagccccgctagtgcatttgaagggaggtaaattaatgtaaatacctttgtaagtgctatttgagcccgaaggtttttc 37976642  T
Q  241 ctgccttggactggggcaccatcccctcac 270  Q
    |||||||| |||||||||||||||||||||    
T  37976643 ctgccttgaactggggcaccatcccctcac 37976672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 41910865 - 41910946
Alignment:
Q  189 ggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||| |||||||||||| ||||||||||| |||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  41910865 ggaggtaaatgtaattaactttgtaagtgttctttgagcccgaatgtcttctctgccttgaactggggcaccatcccctcac 41910946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 31673877 - 31673951
Alignment:
Q  195 aaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||||| | |||||| |||||| |||||||||  || ||| |||||||||||||||||||||||| ||||||||    
T  31673877 aaatgtaaatccctttg-aagtgccctttgagccctaaggtcctccctgccttggactggggcaccaacccctcac 31673951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 5009531 - 5009430
Alignment:
Q  165 cgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcc 264  Q
    ||||||| | ||||| ||||| || ||||||||||||| ||  ||||||| || |||||||  | ||| ||||||| ||||||| ||||| ||| |||||    
T  5009531 cgagccccgttagtgtctttggagagagataaatgtaaatatttttgtaaatgttctttgaatccgaaggtcttccatgccttgaactggtgcatcatcc 5009432  T
Q  265 cc 266  Q
    ||    
T  5009431 cc 5009430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 35237102 - 35237069
Alignment:
Q  237 ttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||| ||||||||||||||||    
T  35237102 ttccctgccttggactgaggcaccatcccctcac 35237069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 46494533 - 46494408
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||||||||||||||  |||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| ||||||||| |    
T  46494533 aatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctac 46494434  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  46494433 cttggactggggcaccatcccctcac 46494408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 51066490 - 51066615
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||| ||||||||||| | ||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||||    
T  51066490 aatccgagagaactcgggttcgagctccgctagtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcccgaaggtcttccctgc 51066589  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  51066590 cttggactggggcaccatcccctcac 51066615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 51714100 - 51713975
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||| |||||||||||    
T  51714100 aatccgagagaacccgggttcgagccccactagtgcctttgaagggaggtaaatataaatacctttgtaagtgctctttgagcccgaaggtcttccctgc 51714001  T
Q  245 cttggactggggcaccatcccctcac 270  Q
     ||| |||||||||||||||||||||    
T  51714000 tttgaactggggcaccatcccctcac 51713975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 36192542 - 36192663
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||||||||||||||||||  |||||||||||| |||||| ||||||||||||| ||||||| ||||||||||||| ||| ||||||||| |||||    
T  36192542 cgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaattacttttgtaaatgctctttgagcccgaaggtcttccctaccttg 36192641  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||    
T  36192642 gactggggcaccatcccctcac 36192663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 30970519 - 30970394
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||| |||||||||||||   ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||  ||| ||||||||| |    
T  30970519 aatccgagagaatccgggttcgagcctcactagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctac 30970420  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||| ||||||||||||||||||||||    
T  30970419 cttagactggggcaccatcccctcac 30970394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 32139161 - 32139286
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||| |||||||| ||| ||||||| ||||| |||||| |||||||||||||||||||||||| |||||||||| ||| |||||| ||||    
T  32139161 aatccgagagaacctgggttcgaaccccgctagtgtctttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaaggtcttctctgc 32139260  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||| ||||    
T  32139261 cttggactggggcaccatcccttcac 32139286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 176 - 270
Target Start/End: Original strand, 55231715 - 55231809
Alignment:
Q  176 agtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  55231715 agtgcctttgaagggaggtaaatgtaaatacttttgtaagtgctctttgagcctgaatgtcttccctgccttggactggggcaccatcccctcac 55231809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 7173720 - 7173595
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||  ||||| || || ||||||||||||| | |||| ||||||| | ||||||||||||||||||||||||| ||| |||||||||||    
T  7173720 aatccgagagaacctaggttcaagacccgctagtgcctttggaaggaggtaaatgtcaatacctttgtaagtgctctttgagcccgaaggtcttccctgc 7173621  T
Q  245 cttggactggggcaccatcccctcac 270  Q
     |||||||||||||||||||||||||    
T  7173620 gttggactggggcaccatcccctcac 7173595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 8740445 - 8740550
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||| ||||||||||||||| ||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| ||||||| |||    
T  8740445 aatccgagagatcccgggttcgagccccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccatgc 8740544  T
Q  245 cttgga 250  Q
    ||||||    
T  8740545 cttgga 8740550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 39863913 - 39863788
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||  ||| ||||||||||||| |||||  |||||||||||||||||||||||||||||||| || ||| |||||| || |    
T  39863913 aatccgagagaacccgggttcggaccccgctagtgcctttggagggaagtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttctctac 39863814  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||| | ||| ||||||||||    
T  39863813 cttggactgagacactatcccctcac 39863788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 145 - 264
Target Start/End: Original strand, 50905745 - 50905864
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||| | |||||||||||| ||||||||||||| || ||| |||||||||||| ||||||| |||||||||||| | ||| ||||||| |||    
T  50905745 aatccgagagaatctgggttcgagccccgctagtgcctttggagagaggtaaatgtaattatctttgtaggtgctctttgagtccgaaggtcttccatgc 50905844  T
Q  245 cttggactggggcaccatcc 264  Q
    |||| |||||||||||||||    
T  50905845 cttgaactggggcaccatcc 50905864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 29576444 - 29576537
Alignment:
Q  177 gtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||| |||||| ||||||||| || |||||||||||||||||||||| ||| ||||||||||||||||| |||||||||| ||||||||    
T  29576444 gtgcctttggagggaggtaaatgtaaataactttgtaagtgctctttgagcccgaaggtcttccctgccttggattggggcaccaccccctcac 29576537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 47627130 - 47627003
Alignment:
Q  145 aatccgagagaacccgggttcgag--ccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccct 242  Q
    ||||||||||||||||| ||||||  |||  ||||||||||||||||||| ||||||||| ||||| | ||| | |||||||| |  ||| |||||||||    
T  47627130 aatccgagagaacccggattcgagagccccactagtgcctttgaagggaggtaaatgtaaatacctctataaatactctttgaactcgaaggtcttccct 47627031  T
Q  243 gccttggactggggcaccatcccctcac 270  Q
    ||||||||||||  ||||||| ||||||    
T  47627030 gccttggactggaacaccatctcctcac 47627003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 22304167 - 22304101
Alignment:
Q  204 tacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||    
T  22304167 tacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactggggcaccatcctctcac 22304101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 676767 - 676847
Alignment:
Q  187 agggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccct 267  Q
    |||||| ||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||   |||||||||||    
T  676767 agggaggtaagtgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactgtaacaccatcccct 676847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 4080651 - 4080564
Alignment:
Q  181 ctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctc 268  Q
    ||||| |||||| ||||||||||||| ||||||| ||||||||||| | |||||||||| ||| |||||| ||| |||||||||||||    
T  4080651 ctttggagggaggtaaatgtaattacatttgtaaatgctctttgagtctgaatgtcttctctgtcttggattggagcaccatcccctc 4080564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 270
Target Start/End: Original strand, 2570216 - 2570323
Alignment:
Q  163 ttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccat 262  Q
    ||||||| | ||| ||||||||| |||||| ||||| ||| || | || ||| || |||||||| | |||  ||||||||||||||||||||||||||||    
T  2570216 ttcgagctccgctggtgcctttggagggaggtaaatataaatatcattataaatgttctttgagtccgaagatcttccctgccttggactggggcaccat 2570315  T
Q  263 cccctcac 270  Q
    ||||||||    
T  2570316 cccctcac 2570323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 41523423 - 41523514
Alignment:
Q  174 ctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatccc 265  Q
    |||||| ||||| |||||| ||||||||| ||||||| ||||||||||||||||  ||| |||||||||  |||||| |||| |||||||||    
T  41523423 ctagtgtctttggagggaggtaaatgtaaatacctttataagtgctctttgagctcgaaggtcttccctatcttggattgggacaccatccc 41523514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 50399763 - 50399672
Alignment:
Q  159 cgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttgga 250  Q
    ||||||||||||| ||||||||  ||| ||| || ||||||||| |||||||||||||| ||||||||||  ||||||||| || |||||||    
T  50399763 cgggttcgagccccgctagtgctcttggaggaaggtaaatgtaaatacctttgtaagtgttctttgagcctaaatgtcttctctaccttgga 50399672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 2294841 - 2294726
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    ||||||||| ||||||||||    ||||||||||||| ||| || |||||||||||||      ||||| || ||||||| ||| |||||| |||||||     
T  2294841 cgagagaactcgggttcgagtttcgctagtgcctttggaggaaggtaaatgtaattac------aagtgttcgttgagcccgaaagtcttcactgcctta 2294748  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||    
T  2294747 gactggggcaccatcccctcac 2294726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 51279154 - 51279043
Alignment:
Q  159 cgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggca 258  Q
    |||||| ||||||| ||| ||| |||  |||||| | ||||||| ||| |||||||||||||||||||||  || ||||||||  ||||||| |  ||||    
T  51279154 cgggtttgagccctactaatgcttttagagggaggtcaatgtaaatacttttgtaagtgctctttgagcccaaaggtcttcccaaccttggattaaggca 51279055  T
Q  259 ccatcccctcac 270  Q
    ||||||||||||    
T  51279054 ccatcccctcac 51279043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 22423373 - 22423479
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||| |||||| | ||| ||||||||| | |||| |||||| |||||| ||||||||| ||| |||||||||| |||||| |   ||| |||||||||||    
T  22423373 aatctgagagatctcggattcgagcccggttagtacctttggagggaggtaaatgtaaatacttttgtaagtgttctttgtgttcgaaggtcttccctgc 22423472  T
Q  245 cttggac 251  Q
     ||||||    
T  22423473 tttggac 22423479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 37990663 - 37990606
Alignment:
Q  212 taagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctca 269  Q
    ||||| ||||||||||| |||  |||||||| ||||||||||||||||||| ||||||    
T  37990663 taagtactctttgagcctgaagatcttccctaccttggactggggcaccattccctca 37990606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 51066240 - 51066276
Alignment:
Q  234 gtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||||||| |||||||||||||||||||||    
T  51066240 gtcttccctgccttgaactggggcaccatcccctcac 51066276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 35163885 - 35163760
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||| ||||||||||||  ||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  35163885 aatccgagagaaccagggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgc 35163786  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  35163785 cttggactggggcaccatcccctcac 35163760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 20685350 - 20685447
Alignment:
Q  173 gctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  20685350 gctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccttcac 20685447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 19686962 - 19686837
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||| ||||||||| ||||||||||||  |||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||  |||| ||| |    
T  19686962 aatctgagagaacctgggttcgagcccctctagtgcctttgtagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatctttcctcc 19686863  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||| |||||||||| |||||||||||    
T  19686862 cttagactggggcatcatcccctcac 19686837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 17948705 - 17948802
Alignment:
Q  173 gctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||| ||||| || ||| ||||||||| ||||||||||||||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||    
T  17948705 gctagtgtctttggagagaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactgggacaccatcccctcac 17948802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 270
Target Start/End: Original strand, 15070152 - 15070247
Alignment:
Q  175 tagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||| |||||| ||||| ||||||| |||||||||| || ||||||| ||| |||||||||||||| ||||||||||||||||||||||    
T  15070152 tagtgcctttggagggaggtaaatataattacatttgtaagtgttcattgagcccgaaggtcttccctgccttagactggggcaccatcccctcac 15070247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 2711869 - 2711763
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||| |||||| || |||||||||  ||||||| |||| |||||| ||||||||| ||||||||||||||||||||||||  ||| |||||||||||    
T  2711869 aatccgatagaacctggattcgagccccactagtgcttttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgc 2711770  T
Q  245 cttggac 251  Q
    |||||||    
T  2711769 cttggac 2711763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 14505658 - 14505534
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||| ||||  ||||||||| |||||||| |||| |||||| |||||||||| |||||||||| |  |||||| ||  |||  |||||| |||    
T  14505658 aatccgagagatcccgaattcgagccccgctagtgcttttggagggaggtaaatgtaat-acctttgtaaatattctttgggcgcgaagatcttccgtgc 14505560  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  14505559 cttggactggggcaccatcccctcac 14505534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 14496349 - 14496406
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaa 202  Q
    |||||||||||||||||||||||||||  |||||||||||| |||||| |||||||||    
T  14496349 aatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaa 14496406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 24336633 - 24336718
Alignment:
Q  166 gagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggac 251  Q
    |||| |||||||| |||||| |||||| ||||||||| ||| |||||||||| | |||||||| |||  |||||||||||||||||    
T  24336633 gagctctgctagtccctttggagggaggtaaatgtaaatacttttgtaagtgttttttgagcctgaagatcttccctgccttggac 24336718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 7099 - 6994
Alignment:
Q  150 gagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttgg 249  Q
    ||||||| ||||||||||| || |||||||| |||| |||||  |||||||||||||||||| ||||| |||||||| | ||| ||||||||| ||||||    
T  7099 gagagaatccgggttcgagtcccgctagtgcgtttggagggaagtaaatgtaattacctttgcaagtgttctttgagtccgaaggtcttccctaccttgg 7000  T
Q  250 actggg 255  Q
    ||||||    
T  6999 actggg 6994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University