View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16156_high_2 (Length: 238)
Name: NF16156_high_2
Description: NF16156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16156_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 1139695 - 1139513
Alignment:
| Q |
18 |
caaaattggtatgaatcttcattgtcatttgggattctcttttgaattttaagatgattttattcatatcacaaataattaaacctaaccttgcattgat |
117 |
Q |
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| T |
1139695 |
caaaattgatatgaatcttcattgtcatttgagattttcttttgaattttaagattattttattcatatcacaaataattaaacctaaccttgcattgat |
1139596 |
T |
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| Q |
118 |
gcaataatatataactttatcgacaattttaacacctttggtttagtttagaagagtctaaatatcagtcacgtgttttaacc |
200 |
Q |
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| T |
1139595 |
gcaataatatataaatttatcgacaattttaacacctttggtttagtttagaagagtataaatatgagtcacgtgttttaacc |
1139513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 32618034 - 32617991
Alignment:
| Q |
51 |
attctcttttgaattttaagatgattttattcatatcacaaata |
94 |
Q |
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| T |
32618034 |
attctcttttgaattttaagatgattatatttagatcacaaata |
32617991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 161
Target Start/End: Original strand, 14604880 - 14604988
Alignment:
| Q |
51 |
attctcttttgaattttaagatgattttattcatatcacaaataattaaacctaaccttgcattgatgcaataatatataacttta--tcgacaatttta |
148 |
Q |
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| T |
14604880 |
attctcttttgaattttaagatgattatatttagatcacaagtag----acctcaccttccattgatgctatgatatttaacttttactctataatttga |
14604975 |
T |
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| Q |
149 |
acacctttggttt |
161 |
Q |
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| T |
14604976 |
acacctttggttt |
14604988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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