View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16156_low_1 (Length: 270)

Name: NF16156_low_1
Description: NF16156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16156_low_1
NF16156_low_1
[»] chr3 (24 HSPs)
chr3 (145-270)||(8400852-8400977)
chr3 (145-270)||(7417795-7417920)
chr3 (145-270)||(50823695-50823820)
chr3 (145-270)||(50852040-50852165)
chr3 (145-270)||(35198762-35198887)
chr3 (149-270)||(22855888-22856009)
chr3 (145-270)||(34824553-34824678)
chr3 (145-270)||(43334064-43334189)
chr3 (145-270)||(52545318-52545443)
chr3 (163-261)||(29635883-29635981)
chr3 (149-270)||(55468000-55468122)
chr3 (195-270)||(37330617-37330692)
chr3 (177-270)||(22371739-22371832)
chr3 (195-270)||(30534912-30534987)
chr3 (162-270)||(42876229-42876337)
chr3 (195-270)||(37454754-37454829)
chr3 (149-244)||(48077977-48078072)
chr3 (177-269)||(19872494-19872586)
chr3 (145-270)||(50726007-50726132)
chr3 (145-270)||(50786716-50786841)
chr3 (208-270)||(25910676-25910738)
chr3 (164-217)||(41922661-41922714)
chr3 (237-270)||(773666-773699)
chr3 (187-270)||(30203664-30203744)
[»] chr7 (17 HSPs)
chr7 (145-270)||(35109688-35109813)
chr7 (145-270)||(38265247-38265372)
chr7 (145-270)||(16059363-16059488)
chr7 (145-270)||(41151169-41151295)
chr7 (145-270)||(21577108-21577233)
chr7 (145-270)||(34721831-34721956)
chr7 (145-270)||(45278449-45278574)
chr7 (145-270)||(12472118-12472243)
chr7 (145-270)||(18116954-18117079)
chr7 (145-270)||(38405164-38405289)
chr7 (166-270)||(37095220-37095324)
chr7 (161-270)||(245274-245383)
chr7 (145-270)||(48176396-48176522)
chr7 (145-270)||(11216766-11216891)
chr7 (187-270)||(28407547-28407626)
chr7 (149-269)||(23028684-23028804)
chr7 (238-270)||(39234853-39234885)
[»] chr2 (25 HSPs)
chr2 (145-270)||(45136980-45137105)
chr2 (145-270)||(6672803-6672928)
chr2 (145-270)||(40156037-40156162)
chr2 (145-270)||(17136384-17136509)
chr2 (145-270)||(36836339-36836464)
chr2 (145-270)||(25987671-25987797)
chr2 (145-270)||(2754061-2754186)
chr2 (149-270)||(10745242-10745363)
chr2 (149-270)||(21637898-21638019)
chr2 (145-270)||(44650390-44650515)
chr2 (145-270)||(5039417-5039542)
chr2 (149-270)||(36380142-36380263)
chr2 (173-270)||(558449-558546)
chr2 (151-268)||(3200884-3201001)
chr2 (149-270)||(26690155-26690276)
chr2 (145-268)||(7860158-7860281)
chr2 (150-269)||(33066592-33066711)
chr2 (145-270)||(2357086-2357210)
chr2 (54-136)||(9826340-9826423)
chr2 (149-270)||(30372690-30372811)
chr2 (181-266)||(21487181-21487266)
chr2 (149-270)||(13047166-13047282)
chr2 (15-76)||(9826431-9826492)
chr2 (234-270)||(2098836-2098872)
chr2 (194-270)||(4553568-4553644)
[»] chr1 (17 HSPs)
chr1 (145-270)||(30054452-30054577)
chr1 (149-270)||(30370070-30370191)
chr1 (145-270)||(20014455-20014580)
chr1 (145-270)||(45324003-45324128)
chr1 (166-270)||(22024121-22024225)
chr1 (149-270)||(21090116-21090237)
chr1 (149-270)||(12025182-12025303)
chr1 (145-270)||(30850850-30850975)
chr1 (145-270)||(4573376-4573501)
chr1 (177-270)||(14498089-14498182)
chr1 (194-270)||(35371755-35371831)
chr1 (161-270)||(33763264-33763373)
chr1 (174-270)||(33762550-33762646)
chr1 (160-268)||(44438562-44438670)
chr1 (207-270)||(35618034-35618097)
chr1 (220-269)||(17015192-17015241)
chr1 (145-192)||(15034452-15034499)
[»] chr8 (20 HSPs)
chr8 (150-270)||(32296649-32296769)
chr8 (145-270)||(19723308-19723433)
chr8 (145-270)||(29767185-29767308)
chr8 (145-270)||(4840137-4840262)
chr8 (149-270)||(11404002-11404123)
chr8 (166-270)||(17095568-17095672)
chr8 (145-269)||(22711506-22711630)
chr8 (181-270)||(36261679-36261768)
chr8 (177-260)||(21355004-21355087)
chr8 (145-224)||(27881044-27881123)
chr8 (145-224)||(28021225-28021304)
chr8 (151-270)||(28739571-28739690)
chr8 (191-270)||(11909433-11909512)
chr8 (151-270)||(30682842-30682960)
chr8 (149-270)||(41553286-41553407)
chr8 (181-270)||(43288105-43288194)
chr8 (163-247)||(24475029-24475113)
chr8 (145-270)||(11610277-11610402)
chr8 (220-270)||(27879570-27879620)
chr8 (220-270)||(28019751-28019801)
[»] scaffold0021 (1 HSPs)
scaffold0021 (149-270)||(107701-107822)
[»] chr5 (7 HSPs)
chr5 (145-270)||(17064320-17064445)
chr5 (145-270)||(20983013-20983138)
chr5 (145-270)||(37976543-37976672)
chr5 (189-270)||(41910865-41910946)
chr5 (195-270)||(31673877-31673951)
chr5 (165-266)||(5009430-5009531)
chr5 (237-270)||(35237069-35237102)
[»] chr4 (24 HSPs)
chr4 (145-270)||(46494408-46494533)
chr4 (145-270)||(51066490-51066615)
chr4 (145-270)||(51713975-51714100)
chr4 (149-270)||(36192542-36192663)
chr4 (145-270)||(30970394-30970519)
chr4 (145-270)||(32139161-32139286)
chr4 (176-270)||(55231715-55231809)
chr4 (145-270)||(7173595-7173720)
chr4 (145-250)||(8740445-8740550)
chr4 (145-270)||(39863788-39863913)
chr4 (145-264)||(50905745-50905864)
chr4 (177-270)||(29576444-29576537)
chr4 (145-270)||(47627003-47627130)
chr4 (204-270)||(22304101-22304167)
chr4 (187-267)||(676767-676847)
chr4 (181-268)||(4080564-4080651)
chr4 (163-270)||(2570216-2570323)
chr4 (174-265)||(41523423-41523514)
chr4 (159-250)||(50399672-50399763)
chr4 (149-270)||(2294726-2294841)
chr4 (159-270)||(51279043-51279154)
chr4 (145-251)||(22423373-22423479)
chr4 (212-269)||(37990606-37990663)
chr4 (234-270)||(51066240-51066276)
[»] chr6 (9 HSPs)
chr6 (145-270)||(35163760-35163885)
chr6 (173-270)||(20685350-20685447)
chr6 (145-270)||(19686837-19686962)
chr6 (173-270)||(17948705-17948802)
chr6 (175-270)||(15070152-15070247)
chr6 (145-251)||(2711763-2711869)
chr6 (145-270)||(14505534-14505658)
chr6 (145-202)||(14496349-14496406)
chr6 (166-251)||(24336633-24336718)
[»] scaffold0691 (1 HSPs)
scaffold0691 (150-255)||(6994-7099)


Alignment Details
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 8400852 - 8400977
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  8400852 aatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 8400951  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  8400952 cttggactggggcaccatcccctcac 8400977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 7417795 - 7417920
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||    
T  7417795 aatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttcactgc 7417894  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  7417895 cttggactggggcaccatcccctcac 7417920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 50823695 - 50823820
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||| ||||||||||| || | ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  50823695 aatccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 50823794  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  50823795 cttggactggggcaccatcccctcac 50823820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 50852165 - 50852040
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||| ||||||||||| || | ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  50852165 aatccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 50852066  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  50852065 cttggactggggcaccatcccctcac 50852040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 35198762 - 35198887
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||||||||||||||  ||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  35198762 aatccgagagaacccgggttcgagccccactaatgcctttgcagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgc 35198861  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    |||||||||| |||||||||||||||    
T  35198862 cttggactggagcaccatcccctcac 35198887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 22855888 - 22856009
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    ||||||||||| ||||||||||| ||||||| ||||| |||||| |||||||||||||||||||||||||||||| ||||  || |||||||||||||||    
T  22855888 cgagagaacccaggttcgagccccgctagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttaagcccaaaggtcttccctgccttg 22855987  T
Q  249 gactggggcaccatcccctcac 270  Q
    |||||| |||||||||||||||    
T  22855988 gactggagcaccatcccctcac 22856009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 34824553 - 34824678
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||| | ||||||| || | |||||||||||||||||| |||||||||||| ||||||||||||||||||| || ||| |||||||| ||    
T  34824553 aatccgagagaacctgagttcgagtcccgttagtgcctttgaagggaggtaaatgtaattatctttgtaagtgctctttgatcccgaaggtcttcccggc 34824652  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  34824653 cttggactggggcaccatcccctcac 34824678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 43334189 - 43334064
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||| |||||||||| ||||||| ||| | |||||| ||||||||| ||| |||||||||||| |||||||| ||| |||||||||||    
T  43334189 aatccgagagaacccgagttcgagccccgctagtgtcttgggagggaggtaaatgtaaatacttttgtaagtgctatttgagcccgaaggtcttccctgc 43334090  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    |||||||||||| |||||||||||||    
T  43334089 cttggactggggtaccatcccctcac 43334064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 52545318 - 52545443
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||| ||  ||||||||||||| |||||||||||| ||||||| ||||||||| ||| |||||||||  |||||||||| ||| |||||||||||    
T  52545318 aatccgagaaaattcgggttcgagccccgctagtgcctttaaagggaggtaaatgtaaatacttttgtaagtagtctttgagcccgaaggtcttccctgc 52545417  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  52545418 cttggactggggcaccatcccctcac 52545443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 29635883 - 29635981
Alignment:
Q  163 ttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcacca 261  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  29635883 ttcgagcctcgctagtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttaagcccgaatgtcttccctgccttggagtggggcacca 29635981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 55468000 - 55468122
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgag-ccagaatgtcttccctgcctt 247  Q
    |||||||| ||||||||||||||  ||| ||| |||| |||||| ||||||||| ||||||||||||||||||||||| || ||| |||||| |||||||    
T  55468000 cgagagaatccgggttcgagccccactaatgcgtttggagggaggtaaatgtaaatacctttgtaagtgctctttgagccccgaaggtcttctctgcctt 55468099  T
Q  248 ggactggggcaccatcccctcac 270  Q
    |||||||||||||||||||||||    
T  55468100 ggactggggcaccatcccctcac 55468122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 37330692 - 37330617
Alignment:
Q  195 aaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||    
T  37330692 aaatgtaattacctttgtaagtgctctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcac 37330617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 22371832 - 22371739
Alignment:
Q  177 gtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||| || |||  |||||||||| || ||||||||||||||||||||||    
T  22371832 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaagatcttccctgctttagactggggcaccatcccctcac 22371739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 30534987 - 30534912
Alignment:
Q  195 aaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||| |||||||||||||    
T  30534987 aaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttggactggggtaccatcccctcac 30534912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 270
Target Start/End: Original strand, 42876229 - 42876337
Alignment:
Q  162 gttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcacca 261  Q
    ||||||||||  |||||| ||||  | |||| |||||||||||||||||||||||||||||||| |  |||||||||||||  |||||||| ||||||||    
T  42876229 gttcgagcccgactagtgtctttagatggaggtaaatgtaattacctttgtaagtgctctttgaacttgaatgtcttccctatcttggactagggcacca 42876328  T
Q  262 tcccctcac 270  Q
    ||| |||||    
T  42876329 tcctctcac 42876337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 37454829 - 37454754
Alignment:
Q  195 aaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||||||| |||| || |||||||||||||||||||    
T  37454829 aaatataattacctttgtaagtgctctttgagcccgaaggtcttccctaccttagattggggcaccatcccctcac 37454754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 48078072 - 48077977
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||| ||||||||||||   |||||||||||| ||| || ||||||||| || |||||||||||||||||||||| ||| |||||||||||    
T  48078072 cgagagaactcgggttcgagcctcactagtgcctttggaggaaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttccctgc 48077977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 269
Target Start/End: Complemental strand, 19872586 - 19872494
Alignment:
Q  177 gtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctca 269  Q
    ||||||||| ||| || ||||  ||||||||||||||||| ||||||||  | ||| |||||||||| |||||||||||||||||||||||||    
T  19872586 gtgcctttggaggaaggtaaaattaattacctttgtaagtactctttgaatccgaaggtcttccctgtcttggactggggcaccatcccctca 19872494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 50726132 - 50726007
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||  ||||||||||||| | ||||| ||||| ||| || ||||| ||||||| ||||||||| || ||||||   ||| ||||||||| |    
T  50726132 aatccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaaagtcttccctac 50726033  T
Q  245 cttggactggggcaccatcccctcac 270  Q
     ||||| |||||||||||||| ||||    
T  50726032 tttggattggggcaccatcccttcac 50726007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 50786716 - 50786841
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||  ||||||||||||| | ||||| ||||| ||| || ||||| ||||||| ||||||||| || ||||||   ||| ||||||||| |    
T  50786716 aatccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaaagtcttccctac 50786815  T
Q  245 cttggactggggcaccatcccctcac 270  Q
     ||||| |||||||||||||| ||||    
T  50786816 tttggattggggcaccatcccttcac 50786841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 25910738 - 25910676
Alignment:
Q  208 tttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||| | |||  ||||||||||||||||||| ||||||||||||||||    
T  25910738 tttgtaagtgctctttgagtccgaagatcttccctgccttggactgaggcaccatcccctcac 25910676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 41922714 - 41922661
Alignment:
Q  164 tcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtg 217  Q
    |||||||||| || |||||||||||||||||||||| || ||| ||||||||||    
T  41922714 tcgagccctgttattgcctttgaagggagataaatgcaaatacatttgtaagtg 41922661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 773666 - 773699
Alignment:
Q  237 ttccctgccttggactggggcaccatcccctcac 270  Q
    |||||| |||||||||||||||||||||||||||    
T  773666 ttcccttccttggactggggcaccatcccctcac 773699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 30203744 - 30203664
Alignment:
Q  187 agggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||| |||||||||  |||||||||| || |||||||||  ||| || |||| || |||| |||||||||||||||||||||    
T  30203744 agggaggtaaatgtaa--acctttgtaaatgttctttgagctcgaaggttttcc-tgtcttgaactggggcaccatcccctcac 30203664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 35109688 - 35109813
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||||||||||||||  |||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  35109688 aatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 35109787  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  35109788 cttggactggggcaccatcccctcac 35109813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 38265372 - 38265247
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||| |||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  38265372 aatccgagagaacctgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 38265273  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  38265272 cttggactggggcaccatcccctcac 38265247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 16059488 - 16059363
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||| |    
T  16059488 aatccgagagaacccgggttcgagccccgctagtgcctttgcagggaggtaaatgtaattacctttgtaagtgctctctgagcccgaaggtcttccctac 16059389  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  16059388 cttggactggggcaccatcccctcac 16059363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 41151169 - 41151295
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattaccttt-gtaagtgctctttgagccagaatgtcttccctg 243  Q
    ||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||| |||||||||||||||||| ||| ||||||||||    
T  41151169 aatccgagagaacccgggttcgagccccgctagtgtctttggagggaggtaaatgtaattaccttttgtaagtgctctttgagcccgaaggtcttccctg 41151268  T
Q  244 ccttggactggggcaccatcccctcac 270  Q
    |||||||||||||||||||||||||||    
T  41151269 ccttggactggggcaccatcccctcac 41151295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 21577233 - 21577108
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||||||||||||||  ||| |||||||| |||||| ||||||||| ||||||||||||||||||||||| | ||| |||||||||||    
T  21577233 aatccgagagaacccgggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagtccgaaggtcttccctgc 21577134  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  21577133 cttggactggggcaccatcccctcac 21577108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 34721831 - 34721956
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||| ||| ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| | |||||||||    
T  34721831 aatccgagagaacccggattcaagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggacttccctgc 34721930  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    |||||||| |||||||||||||||||    
T  34721931 cttggactcgggcaccatcccctcac 34721956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 45278449 - 45278574
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||  |||||||||||| ||||||||||||||||| | || |||||||||||||||    
T  45278449 aatccgagataacccgggttcgagccccgctagtgcctttgaagggaagtaaatgtaattatctttgtaagtgctctttaaacccgaatgtcttccctgc 45278548  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    |||||||||| |||||||||||||||    
T  45278549 cttggactggagcaccatcccctcac 45278574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 12472118 - 12472243
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||||||||||||||  |||||||||||| |||||| ||||| ||||||||||||||||||||||||||||  ||| ||||||||||     
T  12472118 aatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcacgaaggtcttccctgt 12472217  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    |||||||||||| |||||||||||||    
T  12472218 cttggactggggtaccatcccctcac 12472243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 18117079 - 18116954
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||  ||||||||||||  |||||| |||||||||||||||||||| ||||||||||||   |||  ||||||||||    
T  18117079 aatccgagagaacccgggttcgagccacgctagtgcctttagagggaggtaaatgtaattacctttgtaggtgctctttgaggtcgaagatcttccctgc 18116980  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  18116979 cttggactggggcaccatcccctcac 18116954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 38405289 - 38405164
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||  || |||||||||  ||||||||||||| |||||| |||||||||||| ||||||||||||||||||| || ||| |||||||||||    
T  38405289 aatccgagagaattcgagttcgagcctcgctagtgcctttggagggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtcttccctgc 38405190  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  38405189 cttggactggggcaccatcccctcac 38405164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 166 - 270
Target Start/End: Complemental strand, 37095324 - 37095220
Alignment:
Q  166 gagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatccc 265  Q
    |||||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  37095324 gagccccgctagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatccc 37095225  T
Q  266 ctcac 270  Q
    |||||    
T  37095224 ctcac 37095220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 245383 - 245274
Alignment:
Q  161 ggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcacc 260  Q
    ||||||||||| ||||||||| ||| |||||| |||||||||||| ||||||||  |||||||||||| ||| |||||||||||||||||||||||||||    
T  245383 ggttcgagccccgctagtgcccttggagggaggtaaatgtaattatctttgtaaacgctctttgagcccgaaggtcttccctgccttggactggggcacc 245284  T
Q  261 atcccctcac 270  Q
    ||||||||||    
T  245283 atcccctcac 245274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 48176396 - 48176522
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccct-g 243  Q
    |||||||||||| |||||||||||||| ||||||||||||| | |||| ||||||||| ||| |||||||||| | |||||||| ||| || ||||||      
T  48176396 aatccgagagaatccgggttcgagccccgctagtgcctttggaaggaggtaaatgtaaatacttttgtaagtgttttttgagccggaaggttttccctcc 48176495  T
Q  244 ccttggactggggcaccatcccctcac 270  Q
    |||||||||||||||||||||||||||    
T  48176496 ccttggactggggcaccatcccctcac 48176522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 11216766 - 11216891
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||| ||||||||||||||||||||||   ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| |||||| || |    
T  11216766 aatctgagagaacccgggttcgagccccattagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttctctac 11216865  T
Q  245 cttggactggggcaccatcccctcac 270  Q
     ||||||| ||||| ||| |||||||    
T  11216866 tttggactagggcatcattccctcac 11216891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 28407547 - 28407626
Alignment:
Q  187 agggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||| ||||||||| ||| ||||||||||||||||||||| ||| ||    |  |||||||| |||||||||||||||||||    
T  28407547 agggaggtaaatgtaaatacttttgtaagtgctctttgagcccgaaggt----caagccttggattggggcaccatcccctcac 28407626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 269
Target Start/End: Original strand, 23028684 - 23028804
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||| |||||||||| | |  ||| |||||||  |||||  ||||||||||||||||| |||||| | ||||| || ||| | ||||||| ||||     
T  23028684 cgagagaatccgggttcgaactcctctaatgcctttagagggatgtaaatgtaattacctttataagtgttttttgaacccgaaggccttccctacctta 23028783  T
Q  249 gactggggcaccatcccctca 269  Q
    ||||| | |||||||| ||||    
T  23028784 gactgagacaccatcctctca 23028804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 39234853 - 39234885
Alignment:
Q  238 tccctgccttggactggggcaccatcccctcac 270  Q
    |||||||| ||||||||||||||||||||||||    
T  39234853 tccctgccatggactggggcaccatcccctcac 39234885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 45137105 - 45136980
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  45137105 aatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 45137006  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||| ||||    
T  45137005 cttggactggggcaccatcccttcac 45136980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 6672928 - 6672803
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||| | |||||||||||| ||| |||||||||||    
T  6672928 aatccgagagaacccgggttcaagccccgctagtgcctttggagggaggtaaatgtaattacctttgtacgcgctctttgagcccgaaggtcttccctgc 6672829  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  6672828 cttggactggggcaccatcccctcac 6672803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 40156037 - 40156162
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||| |||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||| |    
T  40156037 aatccgagagaatccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctac 40156136  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    |||| |||||||||||||||||||||    
T  40156137 cttgaactggggcaccatcccctcac 40156162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 17136384 - 17136509
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||| |||||||||||||||||||||| | ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| |||||||| ||    
T  17136384 aatctgagagaacccgggttcgagccccgttagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccccgc 17136483  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  17136484 cttggactggggcaccatcccctcac 17136509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 36836464 - 36836339
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||| ||||||| || ||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||  ||||||||||    
T  36836464 aatccgagagaacccgagttcgagtcccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgc 36836365  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  36836364 cttggactggggcaccatcccctcac 36836339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 25987797 - 25987671
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtc-ttccctg 243  Q
    ||||||||||||| ||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||| | ||| ||| |||||||    
T  25987797 aatccgagagaactcgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaaggtctttccctg 25987698  T
Q  244 ccttggactggggcaccatcccctcac 270  Q
    |||||| ||||||||||||||||||||    
T  25987697 ccttggtctggggcaccatcccctcac 25987671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 2754186 - 2754061
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||| |||||| ||  ||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||  ||| |||||||||||    
T  2754186 aatccgagagaacccggattcgagtcccactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgc 2754087  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  2754086 cttggactggggcaccatcccctcac 2754061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 10745363 - 10745242
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    ||||||||||||||| ||||||| ||||||||||||  |||||| |||||||||||| ||||||||||||||||||| || ||| || ||||||||||||    
T  10745363 cgagagaacccgggtccgagccccgctagtgcctttagagggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtattccctgccttg 10745264  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||    
T  10745263 gactggggcaccatcccctcac 10745242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 21637898 - 21638019
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||||||||||| |||||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||  || |||||| ||||||||    
T  21637898 cgagagaacccgggtttgagccccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccaaaggtcttctctgccttg 21637997  T
Q  249 gactggggcaccatcccctcac 270  Q
    |||| |||||||||||||||||    
T  21637998 gactagggcaccatcccctcac 21638019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 44650390 - 44650515
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||  ||||||| | | ||||||||||| |||||| ||||||||||||||||||||||||||||||||| | |||  ||||||||||    
T  44650390 aatccgagagaacccgatttcgagctccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaagatcttccctgc 44650489  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||| ||||||||||||||||||    
T  44650490 cttggaccggggcaccatcccctcac 44650515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 5039417 - 5039542
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||| ||||||||||| | |||||||| |||  |||||| |||| |||||||||||||||||||||||||||||| |||  |||||||| |    
T  5039417 aatccgagagaactcgggttcgagctccgctagtgcttttagagggaggtaaacgtaattacctttgtaagtgctctttgagcccgaagatcttccctac 5039516  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    |||||||| |||||||||||||||||    
T  5039517 cttggactagggcaccatcccctcac 5039542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 36380263 - 36380142
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    ||||| ||| |||||| || ||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||    
T  36380263 cgagaaaactcgggtttgaaccccgctagtgcctttggagggaggtaaatgtaattccctttgtaagtgctctttgagcccgaaggtcttccctaccttg 36380164  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||| ||||||||||||||||    
T  36380163 gactgaggcaccatcccctcac 36380142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 558546 - 558449
Alignment:
Q  173 gctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| |||| ||||||||| ||||||| |||||||||||||||||||    
T  558546 gctagtgcctttggagggaggtaaatgtaattacttttgtaagtgctctttgagctagaaggtcttcccttccttggaatggggcaccatcccctcac 558449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 268
Target Start/End: Original strand, 3200884 - 3201001
Alignment:
Q  151 agagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttgga 250  Q
    |||||||| || ||||||||  ||||||||||||| |||||| |||||||||||||||||||||||| |||||||||| |||  ||||| ||||||| ||    
T  3200884 agagaacctggattcgagcctcgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaagatcttctctgccttaga 3200983  T
Q  251 ctggggcaccatcccctc 268  Q
    ||||||||||||| ||||    
T  3200984 ctggggcaccatctcctc 3201001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 26690155 - 26690276
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||| | ||||||||| || |||||||| |||| |||||| |||||||||||||||||||||||| |||||| |   ||| |||||||||||||||    
T  26690155 cgagagaatctgggttcgagtcccgctagtgcttttggagggaggtaaatgtaattacctttgtaagtgatctttgtgttcgaaggtcttccctgccttg 26690254  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||| ||||||||||||||||    
T  26690255 gactgaggcaccatcccctcac 26690276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 268
Target Start/End: Complemental strand, 7860281 - 7860158
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||| ||||| |||||| ||||||||||||| |||||| ||||||||  ||| |||||||||| |||||||||| |||  | ||| ||||    
T  7860281 aatccgagagaacctgggtttgagccccgctagtgcctttggagggaggtaaatgtacatacatttgtaagtgttctttgagcccgaagattttctctgc 7860182  T
Q  245 cttggactggggcaccatcccctc 268  Q
    ||||||||| |||| |||||||||    
T  7860181 cttggactgaggcatcatcccctc 7860158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 269
Target Start/End: Original strand, 33066592 - 33066711
Alignment:
Q  150 gagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttgg 249  Q
    ||||||| ||||||||||||    |||||| ||||| || ||| ||||||||| || |||||||||||||||||||||| ||| |||||| || ||||||    
T  33066592 gagagaatccgggttcgagcttcactagtgtctttggagagaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttctctaccttgg 33066691  T
Q  250 actggggcaccatcccctca 269  Q
    ||||||||||||||||||||    
T  33066692 actggggcaccatcccctca 33066711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 2357210 - 2357086
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||  |  ||||| |||||| |||||| ||||||||| |||| |||||| |||| ||||||   ||| ||||||| |||    
T  2357210 aatccgagagaacccgggttcgagttccactagtacctttggagggaggtaaatgtaaataccattgtaaatgct-tttgagttcgaaggtcttccatgc 2357112  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  2357111 cttggactggggcaccatcccctcac 2357086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 9826423 - 9826340
Alignment:
Q  54 agtatattcatttattgttttttaaaaggtgttatcttagcggtgaaagttttacattgtaac--caaatgatatagtttaaatt 136  Q
    |||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  9826423 agtatattcatttattattttt-aaaaggtgttattttagcggtgaaagttttacattgtaacctcaaatgatatagtttaaatt 9826340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 30372811 - 30372690
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    ||||||| || |||||||||| | ||||||||||||| | |||| ||||||||| || |||||| ||||||||||||||| ||| ||||||| |||||||    
T  30372811 cgagagatcctgggttcgagctccgctagtgcctttggaaggaggtaaatgtaaatatctttgttagtgctctttgagcccgaaggtcttccatgccttg 30372712  T
Q  249 gactggggcaccatcccctcac 270  Q
     ||||||| ||||| |||||||    
T  30372711 aactggggtaccataccctcac 30372690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 21487181 - 21487266
Alignment:
Q  181 ctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccc 266  Q
    ||||| |||||| ||||||||| ||  ||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||    
T  21487181 ctttggagggaggtaaatgtaaatatttttgtaagtgctctttgagcccgaaagtcttccctgccttagactggggcaccatcccc 21487266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 13047282 - 13047166
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||| |||||||||||||| ||  ||  ||||| |||||| ||||| ||||||||||   ||||||||||||||||  ||  ||||||||||||||    
T  13047282 cgagagaatccgggttcgagccccgcatgt--ctttggagggaggtaaatataattacctt---aagtgctctttgagcccaaagatcttccctgccttg 13047188  T
Q  249 gactggggcaccatcccctcac 270  Q
    |||||| |||||||||||||||    
T  13047187 gactggagcaccatcccctcac 13047166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 9826492 - 9826431
Alignment:
Q  15 gtgagatgaacaaaatgacttataattttagatgaagtgagtatattcatttattgtttttt 76  Q
    |||| ||||||||||| |||||||||||||||  |||||||||||||||||| || ||||||    
T  9826492 gtgaaatgaacaaaataacttataattttagacaaagtgagtatattcattttttttttttt 9826431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 2098872 - 2098836
Alignment:
Q  234 gtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||||||||||||||||||||||||||||||||||    
T  2098872 gtcttccctgccttggactggggcaccatcccctcac 2098836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 4553644 - 4553568
Alignment:
Q  194 taaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||| ||| ||| ||||||||| ||||||||| | | | |||||| ||| ||| ||||||||||||||||||||||    
T  4553644 taaatataaatacatttgtaagtactctttgagtccggaggtcttctctgtcttagactggggcaccatcccctcac 4553568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 30054577 - 30054452
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| ||| |||||||||||    
T  30054577 aatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgc 30054478  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  30054477 cttggactggggcaccatcccctcac 30054452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 30370191 - 30370070
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||| ||||||||||||||  |||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  30370191 cgagagaatccgggttcgagccccactagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 30370092  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||    
T  30370091 gactggggcaccatcccctcac 30370070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 20014455 - 20014580
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||||||||||| || |||||| |||||| |||||| ||||||||||||| ||||||| ||||||||||||| ||| |||||||||||    
T  20014455 aatccgagagaacccgggttcgagtcccgctagtacctttggagggaggtaaatgtaattacatttgtaaatgctctttgagcctgaaggtcttccctgc 20014554  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||| ||||||||||||||||    
T  20014555 cttggactgaggcaccatcccctcac 20014580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 45324003 - 45324128
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||| |||||| ||||| |||||||| |||| |||||| ||||||||| ||||||||||||||||| ||||||| ||| |||||||||||    
T  45324003 aatccgagagaacctgggttccagccccgctagtgcttttggagggaggtaaatgtaaatacctttgtaagtgctccttgagcccgaaggtcttccctgc 45324102  T
Q  245 cttggactggggcaccatcccctcac 270  Q
     |||||||||||||||||||||||||    
T  45324103 tttggactggggcaccatcccctcac 45324128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 22024121 - 22024225
Alignment:
Q  166 gagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatccc 265  Q
    |||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||    
T  22024121 gagccctgctagtgcctttggatggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttctctgccttggactggggcaccatccc 22024220  T
Q  266 ctcac 270  Q
    |||||    
T  22024221 ctcac 22024225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 21090116 - 21090237
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    ||||||||  ||||||||||||| ||||||||| ||| |||||| ||||||||| ||| ||||||| ||||||||||||| ||| |||||||||||||||    
T  21090116 cgagagaattcgggttcgagccccgctagtgccgttggagggaggtaaatgtaaatacatttgtaaatgctctttgagcccgaaggtcttccctgccttg 21090215  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||    
T  21090216 gactggggcaccatcccctcac 21090237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 12025182 - 12025303
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||||| ||||||||||||   ||||||||||| ||| || ||||||||||||||||||||||| || |||||||| ||| |||||||||||||||    
T  12025182 cgagagaacctgggttcgagccccattagtgcctttggaggaaggtaaatgtaattacctttgtaagtactatttgagcccgaaggtcttccctgccttg 12025281  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||||||||||| ||||||||    
T  12025282 gactggggcaccaccccctcac 12025303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 30850975 - 30850850
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||| ||||||||||||| | ||||| ||||| |||||| ||||| ||||| |||||||||||||||||||| || ||| ||||| ||||     
T  30850975 aatccgagagaactcgggttcgagccccgttagtgtctttggagggaggtaaatataattgcctttgtaagtgctctttgaacccgaaggtctttcctgt 30850876  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  30850875 cttggactggggcaccatcccctcac 30850850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 4573376 - 4573501
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||||||||||||||  ||| || ||||| |||||| ||||||||| ||||||||||||||||||||||||  ||| ||||||||||     
T  4573376 aatccgagagaacccgggttcgagccccactaatgtctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgt 4573475  T
Q  245 cttggactggggcaccatcccctcac 270  Q
     |||||||| ||||| ||||||||||    
T  4573476 tttggactgaggcactatcccctcac 4573501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 14498182 - 14498089
Alignment:
Q  177 gtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||| |  || |||||||||||||||||||||||| ||||||||||||    
T  14498182 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagaccaaaggtcttccctgccttggactggggcgccatcccctcac 14498089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 35371831 - 35371755
Alignment:
Q  194 taaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  35371831 taaatgtaattacctttgtaagtgctctttgagcccgaagttcttccctgccttggactggggcaccatcccctcac 35371755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 33763373 - 33763264
Alignment:
Q  161 ggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcacc 260  Q
    ||||||||||| ||||||||||||  ||||||  ||||||||||||||||||||||| | |||||||| ||| || |||||||||||| ||||||||| |    
T  33763373 ggttcgagccccgctagtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttgaactggggcatc 33763274  T
Q  261 atcccctcac 270  Q
    ||||||||||    
T  33763273 atcccctcac 33763264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 270
Target Start/End: Complemental strand, 33762646 - 33762550
Alignment:
Q  174 ctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||||||||  ||||||  ||||||||||||||||||||||| | |||||||| ||| || |||||||||||||||||||||| |||||||||||    
T  33762646 ctagtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttggactggggcatcatcccctcac 33762550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 268
Target Start/End: Complemental strand, 44438670 - 44438562
Alignment:
Q  160 gggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcac 259  Q
    |||||||||| | |||| |||||||| |||||| ||||||||||||| |||||||||| ||||| |    ||| ||||||||||||||| ||||||| ||    
T  44438670 gggttcgagctccgctaatgcctttggagggaggtaaatgtaattacttttgtaagtgttctttaaattcgaaggtcttccctgccttgaactggggtac 44438571  T
Q  260 catcccctc 268  Q
    |||||||||    
T  44438570 catcccctc 44438562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 35618034 - 35618097
Alignment:
Q  207 ctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||||||||||||||||||| ||| ||||||| ||| ||||||||||| |||||||||||||    
T  35618034 ctttgtaagtgctctttgagcccgaaggtcttccttgctttggactggggtaccatcccctcac 35618097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 17015192 - 17015241
Alignment:
Q  220 ctttgagccagaatgtcttccctgccttggactggggcaccatcccctca 269  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  17015192 ctttgagcccgaaggtcttccctgctttggactggggcaccatcccctca 17015241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 15034452 - 15034499
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggag 192  Q
    ||||||| ||||||| |||||||||||| |||||||||||| ||||||    
T  15034452 aatccgaaagaacccaggttcgagccctactagtgcctttggagggag 15034499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 150 - 270
Target Start/End: Complemental strand, 32296769 - 32296649
Alignment:
Q  150 gagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttgg 249  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  32296769 gagagaacccgggttcaagccctgctagtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 32296670  T
Q  250 actggggcaccatcccctcac 270  Q
    | |||||||||||||||||||    
T  32296669 attggggcaccatcccctcac 32296649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 19723308 - 19723433
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||  ||  ||||||||||    
T  19723308 aatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccaaagatcttccctgc 19723407  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  19723408 cttggactggggcaccatcccctcac 19723433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 29767185 - 29767308
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||| ||||||||||||| |||||||| |||||||||||||||||||| |||||  ||||||||||||||||| |||||||||| ||| |||||||||||    
T  29767185 aatctgagagaacccggggtcgagccccgctagtgcctttgaagggaggtaaat--aattacctttgtaagtgttctttgagcccgaaggtcttccctgc 29767282  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  29767283 cttggactggggcaccatcccctcac 29767308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 4840137 - 4840262
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| |||||| |||||||||||||||||| |  || |||||||||||    
T  4840137 aatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtcattaccattgtaagtgctctttgagtccaaaggtcttccctgc 4840236  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    |||||||| |||||||||||||||||    
T  4840237 cttggactagggcaccatcccctcac 4840262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 11404002 - 11404123
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||||| |||||||||||  ||||||| ||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||    
T  11404002 cgagagaacctgggttcgagcctcgctagtgtctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 11404101  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||    
T  11404102 gactggggcaccatcccctcac 11404123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 17095568 - 17095672
Alignment:
Q  166 gagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatccc 265  Q
    |||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  17095568 gagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatccc 17095667  T
Q  266 ctcac 270  Q
    |||||    
T  17095668 ctcac 17095672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 145 - 269
Target Start/End: Original strand, 22711506 - 22711630
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||| |||||| ||| ||  ||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| ||||||| |||    
T  22711506 aatccgagagaactcgggtttgagtccaactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccttgc 22711605  T
Q  245 cttggactggggcaccatcccctca 269  Q
    |||||||||||||||||||||||||    
T  22711606 cttggactggggcaccatcccctca 22711630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 36261679 - 36261768
Alignment:
Q  181 ctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||||||||||||    
T  36261679 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttgaactggggcaccatcccctcac 36261768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 21355087 - 21355004
Alignment:
Q  177 gtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcacc 260  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||    
T  21355087 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttccctgccttggactggggcacc 21355004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 27881123 - 27881044
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttg 224  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  27881123 aatctgagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttg 27881044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 28021304 - 28021225
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttg 224  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  28021304 aatctgagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttg 28021225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 151 - 270
Target Start/End: Complemental strand, 28739690 - 28739571
Alignment:
Q  151 agagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttgga 250  Q
    |||||||| |||||| |||||  |||||||||||| ||| |  ||||||||| ||||||||||||||||||||||||| ||| ||||||||| |||||||    
T  28739690 agagaacctgggttcaagccccactagtgcctttggaggaaagtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctaccttgga 28739591  T
Q  251 ctggggcaccatcccctcac 270  Q
    |||  |||||||||||||||    
T  28739590 ctgcagcaccatcccctcac 28739571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 11909512 - 11909433
Alignment:
Q  191 agataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||||||||| ||||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  11909512 agataaatgtaaatacctttctaagtgctctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcac 11909433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 151 - 270
Target Start/End: Original strand, 30682842 - 30682960
Alignment:
Q  151 agagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttgga 250  Q
    ||||| |||| ||||||||||  || ||||||||| || ||||||||||||| ||| |||||||||| |||||||||| |||  ||||||||||||||||    
T  30682842 agagagcccgtgttcgagccccactggtgcctttggagagagataaatgtaaatacttttgtaagtgttctttgagcccgaagatcttccctgccttgga 30682941  T
Q  251 ctggggcaccatcccctcac 270  Q
    || |||||||||||||||||    
T  30682942 ct-gggcaccatcccctcac 30682960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 41553286 - 41553407
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||||||| ||||||| ||  ||| || ||||| ||| |  ||||||||| |||||||||||||| |||||||||  ||| ||||||||||||||     
T  41553286 cgagagaacccgagttcgagtcccactaatgtctttggaggaacgtaaatgtaaatacctttgtaagtgttctttgagctcgaaggtcttccctgcctta 41553385  T
Q  249 gactggggcaccatcccctcac 270  Q
    |||||| |||||||||||||||    
T  41553386 gactggagcaccatcccctcac 41553407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 43288105 - 43288194
Alignment:
Q  181 ctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||| |||||| ||||||||||||||||||||| || | |||||| | ||| ||||||||||||||||||||| |||||||||||||||    
T  43288105 ctttggagggaggtaaatgtaattacctttgtaattgatttttgagtccgaaggtcttccctgccttggactggagcaccatcccctcac 43288194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 24475113 - 24475029
Alignment:
Q  163 ttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgcctt 247  Q
    ||||||| | ||||||||||||| |||||| ||||||||| |||||||||||||| |||||||||| ||| ||||| ||||||||    
T  24475113 ttcgagctccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgttctttgagcccgaaggtctttcctgcctt 24475029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 11610277 - 11610402
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||| | ||| ||||||||  ||||||||||||| ||  || ||||| ||| || ||||||||||||| ||| |||| ||| ||||| | |      
T  11610277 aatccgagagatctcggattcgagcctcgctagtgcctttggagaaaggtaaatataaatatctttgtaagtgctgtttaagcccgaaggtcttacttat 11610376  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  11610377 cttggactggggcaccatcccctcac 11610402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 27879620 - 27879570
Alignment:
Q  220 ctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||| |||  |||||||| |||||||||||||||||||||||||||    
T  27879620 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcac 27879570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 28019801 - 28019751
Alignment:
Q  220 ctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||| |||  |||||||| |||||||||||||||||||||||||||    
T  28019801 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcac 28019751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 107822 - 107701
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||    
T  107822 cgagagaacccgagttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctaccctgccttg 107723  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||    
T  107722 gactggggcaccatcccctcac 107701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 17064320 - 17064445
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||||||  ||||||||||||| |||||| ||||||||| |||||||||||||||||||| |||| ||| |||||||||||    
T  17064320 aatccgagagaacccgggttcgagcctcgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttaagcccgaaggtcttccctgc 17064419  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  17064420 cttggactggggcaccatcccctcac 17064445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 20983138 - 20983013
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||| |||||| |||||||||||||| ||||||||||| | || ||| |||||| |||||| ||||||||||||||||||||| ||| |||||||||||    
T  20983138 aatccaagagaatccgggttcgagccccgctagtgccttcggagagaggtaaatgcaattacatttgtaagtgctctttgagcccgaaagtcttccctgc 20983039  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  20983038 cttggactggggcaccatcccctcac 20983013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 37976543 - 37976672
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaat----gtaattacctttgtaagtgctctttgagccagaatgtcttcc 240  Q
    |||||||||||||| |||||||||||| |||||||| ||||||||||| |||||    |||| |||||||||||||||| |||||||| ||| || || |    
T  37976543 aatccgagagaacctgggttcgagccccgctagtgcatttgaagggaggtaaattaatgtaaatacctttgtaagtgctatttgagcccgaaggtttttc 37976642  T
Q  241 ctgccttggactggggcaccatcccctcac 270  Q
    |||||||| |||||||||||||||||||||    
T  37976643 ctgccttgaactggggcaccatcccctcac 37976672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 41910865 - 41910946
Alignment:
Q  189 ggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||| |||||||||||| ||||||||||| |||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  41910865 ggaggtaaatgtaattaactttgtaagtgttctttgagcccgaatgtcttctctgccttgaactggggcaccatcccctcac 41910946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 31673877 - 31673951
Alignment:
Q  195 aaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    |||||||| | |||||| |||||| |||||||||  || ||| |||||||||||||||||||||||| ||||||||    
T  31673877 aaatgtaaatccctttg-aagtgccctttgagccctaaggtcctccctgccttggactggggcaccaacccctcac 31673951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 5009531 - 5009430
Alignment:
Q  165 cgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcc 264  Q
    ||||||| | ||||| ||||| || ||||||||||||| ||  ||||||| || |||||||  | ||| ||||||| ||||||| ||||| ||| |||||    
T  5009531 cgagccccgttagtgtctttggagagagataaatgtaaatatttttgtaaatgttctttgaatccgaaggtcttccatgccttgaactggtgcatcatcc 5009432  T
Q  265 cc 266  Q
    ||    
T  5009431 cc 5009430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 35237102 - 35237069
Alignment:
Q  237 ttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||| ||||||||||||||||    
T  35237102 ttccctgccttggactgaggcaccatcccctcac 35237069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 46494533 - 46494408
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||||||||||||||  |||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| ||||||||| |    
T  46494533 aatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctac 46494434  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  46494433 cttggactggggcaccatcccctcac 46494408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 51066490 - 51066615
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||| ||||||||||| | ||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||||    
T  51066490 aatccgagagaactcgggttcgagctccgctagtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcccgaaggtcttccctgc 51066589  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  51066590 cttggactggggcaccatcccctcac 51066615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 51714100 - 51713975
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||| |||||||||||    
T  51714100 aatccgagagaacccgggttcgagccccactagtgcctttgaagggaggtaaatataaatacctttgtaagtgctctttgagcccgaaggtcttccctgc 51714001  T
Q  245 cttggactggggcaccatcccctcac 270  Q
     ||| |||||||||||||||||||||    
T  51714000 tttgaactggggcaccatcccctcac 51713975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 36192542 - 36192663
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    |||||||||||||||||||||||  |||||||||||| |||||| ||||||||||||| ||||||| ||||||||||||| ||| ||||||||| |||||    
T  36192542 cgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaattacttttgtaaatgctctttgagcccgaaggtcttccctaccttg 36192641  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||    
T  36192642 gactggggcaccatcccctcac 36192663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 30970519 - 30970394
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||| |||||||||||||   ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||  ||| ||||||||| |    
T  30970519 aatccgagagaatccgggttcgagcctcactagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctac 30970420  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||| ||||||||||||||||||||||    
T  30970419 cttagactggggcaccatcccctcac 30970394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 32139161 - 32139286
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||| |||||||| ||| ||||||| ||||| |||||| |||||||||||||||||||||||| |||||||||| ||| |||||| ||||    
T  32139161 aatccgagagaacctgggttcgaaccccgctagtgtctttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaaggtcttctctgc 32139260  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||| ||||    
T  32139261 cttggactggggcaccatcccttcac 32139286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 176 - 270
Target Start/End: Original strand, 55231715 - 55231809
Alignment:
Q  176 agtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  55231715 agtgcctttgaagggaggtaaatgtaaatacttttgtaagtgctctttgagcctgaatgtcttccctgccttggactggggcaccatcccctcac 55231809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 7173720 - 7173595
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||  ||||| || || ||||||||||||| | |||| ||||||| | ||||||||||||||||||||||||| ||| |||||||||||    
T  7173720 aatccgagagaacctaggttcaagacccgctagtgcctttggaaggaggtaaatgtcaatacctttgtaagtgctctttgagcccgaaggtcttccctgc 7173621  T
Q  245 cttggactggggcaccatcccctcac 270  Q
     |||||||||||||||||||||||||    
T  7173620 gttggactggggcaccatcccctcac 7173595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 8740445 - 8740550
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||| ||||||||||||||| ||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| ||||||| |||    
T  8740445 aatccgagagatcccgggttcgagccccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccatgc 8740544  T
Q  245 cttgga 250  Q
    ||||||    
T  8740545 cttgga 8740550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 39863913 - 39863788
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||||||||||||||  ||| ||||||||||||| |||||  |||||||||||||||||||||||||||||||| || ||| |||||| || |    
T  39863913 aatccgagagaacccgggttcggaccccgctagtgcctttggagggaagtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttctctac 39863814  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||| | ||| ||||||||||    
T  39863813 cttggactgagacactatcccctcac 39863788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 145 - 264
Target Start/End: Original strand, 50905745 - 50905864
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||| | |||||||||||| ||||||||||||| || ||| |||||||||||| ||||||| |||||||||||| | ||| ||||||| |||    
T  50905745 aatccgagagaatctgggttcgagccccgctagtgcctttggagagaggtaaatgtaattatctttgtaggtgctctttgagtccgaaggtcttccatgc 50905844  T
Q  245 cttggactggggcaccatcc 264  Q
    |||| |||||||||||||||    
T  50905845 cttgaactggggcaccatcc 50905864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 29576444 - 29576537
Alignment:
Q  177 gtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||| |||||| ||||||||| || |||||||||||||||||||||| ||| ||||||||||||||||| |||||||||| ||||||||    
T  29576444 gtgcctttggagggaggtaaatgtaaataactttgtaagtgctctttgagcccgaaggtcttccctgccttggattggggcaccaccccctcac 29576537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 47627130 - 47627003
Alignment:
Q  145 aatccgagagaacccgggttcgag--ccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccct 242  Q
    ||||||||||||||||| ||||||  |||  ||||||||||||||||||| ||||||||| ||||| | ||| | |||||||| |  ||| |||||||||    
T  47627130 aatccgagagaacccggattcgagagccccactagtgcctttgaagggaggtaaatgtaaatacctctataaatactctttgaactcgaaggtcttccct 47627031  T
Q  243 gccttggactggggcaccatcccctcac 270  Q
    ||||||||||||  ||||||| ||||||    
T  47627030 gccttggactggaacaccatctcctcac 47627003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 22304167 - 22304101
Alignment:
Q  204 tacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||    
T  22304167 tacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactggggcaccatcctctcac 22304101  T

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Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 676767 - 676847
Alignment:
Q  187 agggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccct 267  Q
    |||||| ||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||   |||||||||||    
T  676767 agggaggtaagtgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactgtaacaccatcccct 676847  T

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Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 4080651 - 4080564
Alignment:
Q  181 ctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctc 268  Q
    ||||| |||||| ||||||||||||| ||||||| ||||||||||| | |||||||||| ||| |||||| ||| |||||||||||||    
T  4080651 ctttggagggaggtaaatgtaattacatttgtaaatgctctttgagtctgaatgtcttctctgtcttggattggagcaccatcccctc 4080564  T

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Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 270
Target Start/End: Original strand, 2570216 - 2570323
Alignment:
Q  163 ttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccat 262  Q
    ||||||| | ||| ||||||||| |||||| ||||| ||| || | || ||| || |||||||| | |||  ||||||||||||||||||||||||||||    
T  2570216 ttcgagctccgctggtgcctttggagggaggtaaatataaatatcattataaatgttctttgagtccgaagatcttccctgccttggactggggcaccat 2570315  T
Q  263 cccctcac 270  Q
    ||||||||    
T  2570316 cccctcac 2570323  T

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Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 41523423 - 41523514
Alignment:
Q  174 ctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatccc 265  Q
    |||||| ||||| |||||| ||||||||| ||||||| ||||||||||||||||  ||| |||||||||  |||||| |||| |||||||||    
T  41523423 ctagtgtctttggagggaggtaaatgtaaatacctttataagtgctctttgagctcgaaggtcttccctatcttggattgggacaccatccc 41523514  T

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Target: chr4; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 50399763 - 50399672
Alignment:
Q  159 cgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttgga 250  Q
    ||||||||||||| ||||||||  ||| ||| || ||||||||| |||||||||||||| ||||||||||  ||||||||| || |||||||    
T  50399763 cgggttcgagccccgctagtgctcttggaggaaggtaaatgtaaatacctttgtaagtgttctttgagcctaaatgtcttctctaccttgga 50399672  T

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Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 2294841 - 2294726
Alignment:
Q  149 cgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttg 248  Q
    ||||||||| ||||||||||    ||||||||||||| ||| || |||||||||||||      ||||| || ||||||| ||| |||||| |||||||     
T  2294841 cgagagaactcgggttcgagtttcgctagtgcctttggaggaaggtaaatgtaattac------aagtgttcgttgagcccgaaagtcttcactgcctta 2294748  T
Q  249 gactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||    
T  2294747 gactggggcaccatcccctcac 2294726  T

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Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 51279154 - 51279043
Alignment:
Q  159 cgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggca 258  Q
    |||||| ||||||| ||| ||| |||  |||||| | ||||||| ||| |||||||||||||||||||||  || ||||||||  ||||||| |  ||||    
T  51279154 cgggtttgagccctactaatgcttttagagggaggtcaatgtaaatacttttgtaagtgctctttgagcccaaaggtcttcccaaccttggattaaggca 51279055  T
Q  259 ccatcccctcac 270  Q
    ||||||||||||    
T  51279054 ccatcccctcac 51279043  T

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Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 22423373 - 22423479
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||| |||||| | ||| ||||||||| | |||| |||||| |||||| ||||||||| ||| |||||||||| |||||| |   ||| |||||||||||    
T  22423373 aatctgagagatctcggattcgagcccggttagtacctttggagggaggtaaatgtaaatacttttgtaagtgttctttgtgttcgaaggtcttccctgc 22423472  T
Q  245 cttggac 251  Q
     ||||||    
T  22423473 tttggac 22423479  T

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Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 37990663 - 37990606
Alignment:
Q  212 taagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctca 269  Q
    ||||| ||||||||||| |||  |||||||| ||||||||||||||||||| ||||||    
T  37990663 taagtactctttgagcctgaagatcttccctaccttggactggggcaccattccctca 37990606  T

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Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 51066240 - 51066276
Alignment:
Q  234 gtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||||||| |||||||||||||||||||||    
T  51066240 gtcttccctgccttgaactggggcaccatcccctcac 51066276  T

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Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 35163885 - 35163760
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||||||||||||| ||||||||||||  ||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  35163885 aatccgagagaaccagggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgc 35163786  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  35163785 cttggactggggcaccatcccctcac 35163760  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 20685350 - 20685447
Alignment:
Q  173 gctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  20685350 gctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccttcac 20685447  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 19686962 - 19686837
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    |||| ||||||||| ||||||||||||  |||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||  |||| ||| |    
T  19686962 aatctgagagaacctgggttcgagcccctctagtgcctttgtagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatctttcctcc 19686863  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||| |||||||||| |||||||||||    
T  19686862 cttagactggggcatcatcccctcac 19686837  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 17948705 - 17948802
Alignment:
Q  173 gctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||| ||||| || ||| ||||||||| ||||||||||||||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||    
T  17948705 gctagtgtctttggagagaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactgggacaccatcccctcac 17948802  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 270
Target Start/End: Original strand, 15070152 - 15070247
Alignment:
Q  175 tagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggactggggcaccatcccctcac 270  Q
    ||||||||||| |||||| ||||| ||||||| |||||||||| || ||||||| ||| |||||||||||||| ||||||||||||||||||||||    
T  15070152 tagtgcctttggagggaggtaaatataattacatttgtaagtgttcattgagcccgaaggtcttccctgccttagactggggcaccatcccctcac 15070247  T

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Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 2711869 - 2711763
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||| |||||| || |||||||||  ||||||| |||| |||||| ||||||||| ||||||||||||||||||||||||  ||| |||||||||||    
T  2711869 aatccgatagaacctggattcgagccccactagtgcttttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgc 2711770  T
Q  245 cttggac 251  Q
    |||||||    
T  2711769 cttggac 2711763  T

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Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 14505658 - 14505534
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgc 244  Q
    ||||||||||| ||||  ||||||||| |||||||| |||| |||||| |||||||||| |||||||||| |  |||||| ||  |||  |||||| |||    
T  14505658 aatccgagagatcccgaattcgagccccgctagtgcttttggagggaggtaaatgtaat-acctttgtaaatattctttgggcgcgaagatcttccgtgc 14505560  T
Q  245 cttggactggggcaccatcccctcac 270  Q
    ||||||||||||||||||||||||||    
T  14505559 cttggactggggcaccatcccctcac 14505534  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 14496349 - 14496406
Alignment:
Q  145 aatccgagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaa 202  Q
    |||||||||||||||||||||||||||  |||||||||||| |||||| |||||||||    
T  14496349 aatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaa 14496406  T

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Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 24336633 - 24336718
Alignment:
Q  166 gagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttggac 251  Q
    |||| |||||||| |||||| |||||| ||||||||| ||| |||||||||| | |||||||| |||  |||||||||||||||||    
T  24336633 gagctctgctagtccctttggagggaggtaaatgtaaatacttttgtaagtgttttttgagcctgaagatcttccctgccttggac 24336718  T

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Target: scaffold0691 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 7099 - 6994
Alignment:
Q  150 gagagaacccgggttcgagccctgctagtgcctttgaagggagataaatgtaattacctttgtaagtgctctttgagccagaatgtcttccctgccttgg 249  Q
    ||||||| ||||||||||| || |||||||| |||| |||||  |||||||||||||||||| ||||| |||||||| | ||| ||||||||| ||||||    
T  7099 gagagaatccgggttcgagtcccgctagtgcgtttggagggaagtaaatgtaattacctttgcaagtgttctttgagtccgaaggtcttccctaccttgg 7000  T
Q  250 actggg 255  Q
    ||||||    
T  6999 actggg 6994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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