View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16157_high_1 (Length: 478)

Name: NF16157_high_1
Description: NF16157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16157_high_1
NF16157_high_1
[»] chr6 (2 HSPs)
chr6 (112-321)||(17365010-17365219)
chr6 (345-466)||(17365390-17365511)
[»] scaffold0142 (3 HSPs)
scaffold0142 (56-169)||(908-1021)
scaffold0142 (56-169)||(4442-4555)
scaffold0142 (397-466)||(12426-12495)
[»] chr5 (1 HSPs)
chr5 (183-344)||(23006776-23006937)
[»] chr1 (1 HSPs)
chr1 (151-345)||(20839256-20839450)


Alignment Details
Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 112 - 321
Target Start/End: Original strand, 17365010 - 17365219
Alignment:
Q  112 atttcgacaagatgacagaggctcaatatcaacaatgcattcactctcttgttggtcacatctcagacttcgtgcatgtctcttttcaagcttctgacga 211  Q
    |||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||| || ||||||| |||| | ||||||||||||||||  || |    
T  17365010 atttggacaagataacagaggctcaatatcaacaatgcatgcagtctcttgttggtcacgtcccagactttgtgcctatctcttttcaagcttcccacaa 17365109  T
Q  212 atgcactaaaagcttttctttgtggtggaaaaaatactacttcaccaaccttgttgatgaaccaacatttcgcactaaactgattagtgcttttccttct 311  Q
    ||||||  |||||||||||||||||||||| ||||||||||||| ||||||| ||||||| |||  |||||| || ||| |||| | ||| |||||||||    
T  17365110 atgcaccgaaagcttttctttgtggtggaataaatactacttcaacaaccttattgatgagccagtatttcggacaaaattgatcaatgcgtttccttct 17365209  T
Q  312 ttgcagaaca 321  Q
    ||||||||||    
T  17365210 ttgcagaaca 17365219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 345 - 466
Target Start/End: Original strand, 17365390 - 17365511
Alignment:
Q  345 tgaacaatgtactagccaaatacaaaatggctttaccattttattgggtaagattcccagcattacctagtgcagacttcaccttgtcttttgaacccaa 444  Q
    ||||||| | |||||||| |||||||||||||||| ||||||| |  ||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  17365390 tgaacaacgcactagccagatacaaaatggctttagcattttactacgtaagattcccagcattacctagtgcagacttcactttgtctttcgaacccaa 17365489  T
Q  445 ttacccttcttggttccatttt 466  Q
     |||||| ||||||||||||||    
T  17365490 ctaccctccttggttccatttt 17365511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 908 - 1021
Alignment:
Q  56 aagccagctccatcctgcttccatagctatgattctcaaatccatttatgaagatgatttcgacaagatgacagaggctcaatatcaacaatgcattcac 155  Q
    ||||||||| ||||| ||||| ||||| |||||||||||  | |||||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||     
T  908 aagccagcttcatccagcttctatagccatgattctcaagacgatttatgatgatgatttcgacaaaatgtcagaggctcaatatcaacaatgccttcat 1007  T
Q  156 tctcttgttggtca 169  Q
    ||||||||||||||    
T  1008 tctcttgttggtca 1021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 4442 - 4555
Alignment:
Q  56 aagccagctccatcctgcttccatagctatgattctcaaatccatttatgaagatgatttcgacaagatgacagaggctcaatatcaacaatgcattcac 155  Q
    ||||||||| ||||| ||||| ||||| |||||||||||  | |||||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||     
T  4442 aagccagcttcatccagcttctatagccatgattctcaagacgatttatgatgatgatttcgacaaaatgtcagaggctcaatatcaacaatgccttcat 4541  T
Q  156 tctcttgttggtca 169  Q
    ||||||||||||||    
T  4542 tctcttgttggtca 4555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 466
Target Start/End: Original strand, 12426 - 12495
Alignment:
Q  397 attcccagcattacctagtgcagacttcaccttgtcttttgaacccaattacccttcttggttccatttt 466  Q
    |||||||||||| ||||||||||||||||| |||||||| ||||| |  || ||| ||||||| ||||||    
T  12426 attcccagcattgcctagtgcagacttcactttgtctttcgaaccaagctatcctccttggtttcatttt 12495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 183 - 344
Target Start/End: Original strand, 23006776 - 23006937
Alignment:
Q  183 gtgcatgtctcttttcaagcttctgacgaatgcactaaaagcttttctttgtggtggaaaaaatactacttcaccaaccttgttgatgaaccaacatttc 282  Q
    |||| |||||||||||| |||||  | ||||||||  |||| || ||||||||| |||||||||||||| |  |||||||||| || |||||| ||||||    
T  23006776 gtgcctgtctcttttcaggcttcaaatgaatgcacagaaagtttctctttgtggaggaaaaaatactacctttccaaccttgtcgacgaaccagcatttc 23006875  T
Q  283 gcactaaactgattagtgcttttccttctttgcagaacatatcgaagaaaactaaaggtatg 344  Q
    | || ||  |||| | |||||||||||||||||||| ||  |||||| ||| ||||||||||    
T  23006876 gtaccaacttgatcactgcttttccttctttgcagagcaagtcgaaggaaaataaaggtatg 23006937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 345
Target Start/End: Original strand, 20839256 - 20839450
Alignment:
Q  151 ttcactctcttgttggtcacatctcagacttcgtgcatgtctcttttcaagcttctgacgaatgcactaaaagcttttctttgtggtggaaaaaatacta 250  Q
    |||| ||||||| |||||| ||  ||||||| |||| | |||||||| | |||||  | |||||||| ||||||||||||||||||| ||| ||||| ||    
T  20839256 ttcattctcttgctggtcatattccagactttgtgcctatctctttttatgcttcgcatgaatgcaccaaaagcttttctttgtggtagaacaaatatta 20839355  T
Q  251 cttcaccaaccttgttgatgaaccaacatttcgcactaaactgattagtgcttttccttctttgcagaacatatcgaagaaaactaaaggtatgt 345  Q
    | |  |||||||||| || ||| || ||||||   | || ||||| |||| |||||||||||||||||  |   ||||||||| |||||||||||    
T  20839356 cctttccaaccttgtcgacgaaacatcatttcatgcaaacctgatcagtgattttccttctttgcagagtaagacgaagaaaaataaaggtatgt 20839450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University