View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16157_high_11 (Length: 216)

Name: NF16157_high_11
Description: NF16157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16157_high_11
NF16157_high_11
[»] chr1 (18 HSPs)
chr1 (101-144)||(14071231-14071274)
chr1 (101-142)||(13930705-13930746)
chr1 (106-143)||(50679850-50679887)
chr1 (101-137)||(2971744-2971780)
chr1 (101-132)||(9119847-9119878)
chr1 (105-144)||(13641306-13641345)
chr1 (99-142)||(16217483-16217526)
chr1 (101-144)||(19466233-19466276)
chr1 (106-144)||(3979341-3979379)
chr1 (106-144)||(36511359-36511397)
chr1 (105-142)||(25786017-25786054)
chr1 (105-142)||(26056177-26056214)
chr1 (105-142)||(47411478-47411515)
chr1 (110-142)||(2973038-2973070)
chr1 (101-145)||(14390303-14390347)
chr1 (106-142)||(20953338-20953374)
chr1 (106-142)||(42248335-42248371)
chr1 (99-131)||(47411027-47411059)
[»] chr7 (16 HSPs)
chr7 (101-143)||(33459572-33459614)
chr7 (101-142)||(43007679-43007720)
chr7 (105-144)||(24873625-24873664)
chr7 (105-143)||(17288249-17288287)
chr7 (105-145)||(25153707-25153747)
chr7 (101-144)||(43935230-43935273)
chr7 (106-145)||(46457120-46457159)
chr7 (106-145)||(46458740-46458779)
chr7 (105-143)||(41515045-41515083)
chr7 (99-144)||(4858372-4858417)
chr7 (101-130)||(22060508-22060537)
chr7 (105-142)||(22746350-22746387)
chr7 (105-137)||(18801264-18801296)
chr7 (105-137)||(19279647-19279679)
chr7 (105-137)||(40926554-40926586)
chr7 (105-145)||(41516371-41516411)
[»] chr3 (13 HSPs)
chr3 (99-145)||(29536757-29536803)
chr3 (105-143)||(47766980-47767018)
chr3 (105-143)||(48252982-48253020)
chr3 (105-144)||(11220686-11220725)
chr3 (101-132)||(39287515-39287546)
chr3 (101-144)||(43101939-43101982)
chr3 (105-144)||(51401379-51401418)
chr3 (106-144)||(47855366-47855404)
chr3 (106-144)||(54653994-54654032)
chr3 (105-142)||(53342765-53342802)
chr3 (105-137)||(8372651-8372683)
chr3 (105-137)||(10987688-10987720)
chr3 (101-137)||(32979133-32979169)
[»] chr8 (13 HSPs)
chr8 (101-142)||(37472448-37472489)
chr8 (101-144)||(19913537-19913580)
chr8 (105-143)||(24068379-24068417)
chr8 (101-132)||(21267209-21267240)
chr8 (101-144)||(37274932-37274975)
chr8 (106-144)||(24069474-24069512)
chr8 (99-137)||(29739678-29739716)
chr8 (99-144)||(7816116-7816161)
chr8 (101-142)||(38589865-38589906)
chr8 (105-142)||(38591037-38591074)
chr8 (106-142)||(34616179-34616215)
chr8 (106-142)||(37276273-37276309)
chr8 (105-137)||(41867951-41867983)
[»] chr5 (14 HSPs)
chr5 (105-142)||(12936132-12936169)
chr5 (105-142)||(12950290-12950327)
chr5 (101-144)||(42979493-42979536)
chr5 (104-145)||(15613553-15613594)
chr5 (99-144)||(18678019-18678064)
chr5 (106-143)||(18695676-18695713)
chr5 (99-143)||(5384375-5384419)
chr5 (101-137)||(7345425-7345461)
chr5 (105-143)||(224619-224657)
chr5 (106-144)||(42510164-42510202)
chr5 (99-132)||(4566994-4567027)
chr5 (99-144)||(12933794-12933839)
chr5 (99-132)||(15510303-15510336)
chr5 (99-143)||(8188229-8188273)
[»] chr4 (23 HSPs)
chr4 (101-145)||(40146650-40146694)
chr4 (105-143)||(46796055-46796093)
chr4 (105-142)||(1273463-1273500)
chr4 (99-144)||(26393155-26393200)
chr4 (104-145)||(27408811-27408852)
chr4 (103-143)||(307834-307874)
chr4 (103-143)||(47667225-47667265)
chr4 (105-144)||(3533636-3533675)
chr4 (105-144)||(33377392-33377431)
chr4 (104-143)||(38553977-38554016)
chr4 (106-144)||(28103514-28103552)
chr4 (106-144)||(34438456-34438494)
chr4 (106-139)||(3528240-3528273)
chr4 (106-143)||(30683056-30683093)
chr4 (101-142)||(31711137-31711178)
chr4 (105-142)||(37560329-37560366)
chr4 (99-144)||(56000330-56000375)
chr4 (105-138)||(56001302-56001335)
chr4 (106-142)||(5687225-5687261)
chr4 (105-137)||(15787537-15787569)
chr4 (99-143)||(26376372-26376416)
chr4 (105-133)||(27410721-27410749)
chr4 (106-142)||(53400235-53400271)
[»] scaffold1827 (1 HSPs)
scaffold1827 (101-132)||(1099-1130)
[»] chr6 (8 HSPs)
chr6 (105-144)||(22299931-22299970)
chr6 (105-144)||(31738412-31738451)
chr6 (101-131)||(19368559-19368589)
chr6 (105-142)||(5311328-5311365)
chr6 (105-142)||(8412346-8412383)
chr6 (99-132)||(18139527-18139560)
chr6 (105-137)||(9927655-9927687)
chr6 (106-142)||(31740302-31740338)
[»] chr2 (13 HSPs)
chr2 (103-142)||(1625006-1625045)
chr2 (99-142)||(2581846-2581889)
chr2 (105-144)||(12852935-12852974)
chr2 (105-144)||(23177723-23177762)
chr2 (105-144)||(23588980-23589019)
chr2 (106-144)||(7037016-7037054)
chr2 (106-144)||(12854132-12854170)
chr2 (99-137)||(12958459-12958497)
chr2 (99-132)||(2305583-2305616)
chr2 (99-132)||(37867799-37867832)
chr2 (99-132)||(41795992-41796025)
chr2 (105-145)||(6706975-6707015)
chr2 (104-144)||(42028986-42029026)
[»] scaffold0013 (1 HSPs)
scaffold0013 (105-145)||(96209-96249)


Alignment Details
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 14071274 - 14071231
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  14071274 tcctctaactataaagtgtctcaatttggtcccataagtcttct 14071231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 13930746 - 13930705
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  13930746 tcctctaactataaagtgtctcaatttggtcccataagtctt 13930705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 50679887 - 50679850
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtcttc 143  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  50679887 taactataaagtgtctcaatttggtcccataagtcttc 50679850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 2971744 - 2971780
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataa 137  Q
    |||||||||||||||||||||||||||||||| ||||    
T  2971744 tcctctaactataaagtgtctcaatttggtcccataa 2971780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 132
Target Start/End: Original strand, 9119847 - 9119878
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtcc 132  Q
    ||||||||||||||||||||||||||||||||    
T  9119847 tcctctaactataaagtgtctcaatttggtcc 9119878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 13641306 - 13641345
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  13641306 ctaactataaagtgtctcaatttggtcccataaatcttct 13641345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 16217483 - 16217526
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    |||| ||||||||||||||||||||||||||||| |||| ||||    
T  16217483 gatcatctaactataaagtgtctcaatttggtcctataaatctt 16217526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 19466276 - 19466233
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||| ||||||||||||||||||||||||||| |||| ||||||    
T  19466276 tcctttaactataaagtgtctcaatttggtcccataaatcttct 19466233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 3979379 - 3979341
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtcttct 144  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  3979379 taactataaagtgtctcaatttggtcccataattcttct 3979341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 36511397 - 36511359
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtcttct 144  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  36511397 taactataaagtgtctcaatttggtcccataaatcttct 36511359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 25786017 - 25786054
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  25786017 ctaactataaagtgtctcaatttggtcccataaatctt 25786054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 26056214 - 26056177
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  26056214 ctaactataaagtgtctcaatttggtcccataaatctt 26056177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 47411515 - 47411478
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  47411515 ctaactataaagtgtctcaatttggtcccataaatctt 47411478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 2973070 - 2973038
Alignment:
Q  110 tataaagtgtctcaatttggtccaataagtctt 142  Q
    ||||||||||||||||||||||| |||||||||    
T  2973070 tataaagtgtctcaatttggtcctataagtctt 2973038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 14390303 - 14390347
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataagtcttctt 145  Q
    ||||||||||||||| |||||||||||||| | |||| |||||||    
T  14390303 tcctctaactataaaatgtctcaatttggttccataaatcttctt 14390347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 20953338 - 20953374
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtctt 142  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  20953338 taactataaagtgtctcaatttggtcctataaatctt 20953374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 42248371 - 42248335
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtctt 142  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  42248371 taactataaagtgtctcaatttggtcctataaatctt 42248335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 47411027 - 47411059
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtc 131  Q
    ||||| |||||||||||||||||||||||||||    
T  47411027 gatcccctaactataaagtgtctcaatttggtc 47411059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 33459614 - 33459572
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataagtcttc 143  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  33459614 tcctctaactataaagtgtctcaatttggtcccataagtcttc 33459572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 43007720 - 43007679
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  43007720 tcctctaactataaagtgtctcaatttggtcccataagtctt 43007679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 24873664 - 24873625
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  24873664 ctaactataaagtgtctcaatttggtcccataagtcttct 24873625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 17288287 - 17288249
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttc 143  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  17288287 ctaactataaagtgtctcaatttggtcccataagtcttc 17288249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 25153707 - 25153747
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttctt 145  Q
    |||||||||||||||||||||||||||| |||| |||||||    
T  25153707 ctaactataaagtgtctcaatttggtcccataaatcttctt 25153747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 43935230 - 43935273
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||||||||||||||||||||||||||||||  |||| ||||||    
T  43935230 tcctctaactataaagtgtctcaatttggtctcataaatcttct 43935273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 46457120 - 46457159
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtcttctt 145  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  46457120 taactataaagtgtctcaatttggtcccataaatcttctt 46457159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 46458779 - 46458740
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtcttctt 145  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  46458779 taactataaagtgtctcaatttggtcccataaatcttctt 46458740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 41515045 - 41515083
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttc 143  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  41515045 ctaactataaagtgtttcaatttggtcccataagtcttc 41515083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 4858417 - 4858372
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    ||||| ||||||||||| |||||||||||||||| |||| ||||||    
T  4858417 gatcccctaactataaaatgtctcaatttggtcccataaatcttct 4858372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 130
Target Start/End: Original strand, 22060508 - 22060537
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggt 130  Q
    ||||||||||||||||||||||||||||||    
T  22060508 tcctctaactataaagtgtctcaatttggt 22060537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 22746387 - 22746350
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  22746387 ctaactataaagtgtctcaatttggtcccataaatctt 22746350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 18801264 - 18801296
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataa 137  Q
    |||||||||||||||||||||||||||| ||||    
T  18801264 ctaactataaagtgtctcaatttggtcccataa 18801296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 19279679 - 19279647
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataa 137  Q
    |||||||||||||||||||||||||||| ||||    
T  19279679 ctaactataaagtgtctcaatttggtcccataa 19279647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 40926586 - 40926554
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataa 137  Q
    |||||||||||||||||||||||||||| ||||    
T  40926586 ctaactataaagtgtctcaatttggtcctataa 40926554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 41516411 - 41516371
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttctt 145  Q
    ||||||||||||||||| |||||||||| |||||| |||||    
T  41516411 ctaactataaagtgtcttaatttggtcccataagtattctt 41516371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 29536757 - 29536803
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtccaataagtcttctt 145  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||    
T  29536757 gatcctctaactataaagtgtctcaatttggtcccataaatcttctt 29536803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 47767018 - 47766980
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttc 143  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  47767018 ctaactataaagtgtctcaatttggtcccataagtcttc 47766980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 48252982 - 48253020
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttc 143  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  48252982 ctaactataaagtgtctcaatttggtcccataagtcttc 48253020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 11220725 - 11220686
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  11220725 ctaactataaagtgtctcaatttggtcctataaatcttct 11220686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 132
Target Start/End: Original strand, 39287515 - 39287546
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtcc 132  Q
    ||||||||||||||||||||||||||||||||    
T  39287515 tcctctaactataaagtgtctcaatttggtcc 39287546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 43101939 - 43101982
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||||||| ||||||||||||||||||||||| |||| ||||||    
T  43101939 tcctctaattataaagtgtctcaatttggtcccataattcttct 43101982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 51401418 - 51401379
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  51401418 ctaactataaagtgtctcaatttggtcccataaatcttct 51401379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 47855404 - 47855366
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtcttct 144  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  47855404 taactataaagtgtctcaatttggtcctataaatcttct 47855366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 54654032 - 54653994
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtcttct 144  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  54654032 taactataaagtgtctcaatttggtcccataattcttct 54653994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 53342765 - 53342802
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    ||||||||||||||||||||||||||||| || |||||    
T  53342765 ctaactataaagtgtctcaatttggtccattatgtctt 53342802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 8372683 - 8372651
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataa 137  Q
    |||||||||||||||||||||||||||| ||||    
T  8372683 ctaactataaagtgtctcaatttggtcccataa 8372651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 10987720 - 10987688
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataa 137  Q
    |||||||||||||||||||||||||||| ||||    
T  10987720 ctaactataaagtgtctcaatttggtcccataa 10987688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 32979133 - 32979169
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataa 137  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  32979133 tcctctaactataaagtgtctcaatttgatcccataa 32979169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 37472448 - 37472489
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  37472448 tcctctaactataaagtgtctcaatttggtcccataagtctt 37472489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 19913537 - 19913580
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    ||||||||||||||||||| |||||||||||| |||||||||||    
T  19913537 tcctctaactataaagtgtttcaatttggtcccataagtcttct 19913580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 24068379 - 24068417
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttc 143  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  24068379 ctaactataaagtgtctcaatttggtcccataagtcttc 24068417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 132
Target Start/End: Original strand, 21267209 - 21267240
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtcc 132  Q
    ||||||||||||||||||||||||||||||||    
T  21267209 tcctctaactataaagtgtctcaatttggtcc 21267240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 37274932 - 37274975
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||    
T  37274932 tcctctaactataaagtgtctcaatttgttcccataaatcttct 37274975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 24069512 - 24069474
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtcttct 144  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  24069512 taactataaagtgtctcaatttggtcccataactcttct 24069474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 29739716 - 29739678
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtccaataa 137  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  29739716 gatcccctaactataaagtgtctcaatttggtcccataa 29739678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 7816161 - 7816116
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||| ||||||||||||||||||||||||||||  |||| ||||||    
T  7816161 gatcatctaactataaagtgtctcaatttggtctcataattcttct 7816116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 38589865 - 38589906
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    |||||||||||||||||| ||||||||||||| |||| ||||    
T  38589865 tcctctaactataaagtggctcaatttggtcccataaatctt 38589906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 38591074 - 38591037
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  38591074 ctaactataaagtgtctcaatttggtcccataaatctt 38591037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 34616179 - 34616215
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtctt 142  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  34616179 taactataaagtgtctcaatttggtcccataaatctt 34616215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 37276309 - 37276273
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtctt 142  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  37276309 taactataaagtgtctcaatttggtcccataaatctt 37276273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 41867983 - 41867951
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataa 137  Q
    |||||||||||||||||||||||||||| ||||    
T  41867983 ctaactataaagtgtctcaatttggtcccataa 41867951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 12936169 - 12936132
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12936169 ctaactataaagtgtctcaatttggtccaataagtctt 12936132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 12950327 - 12950290
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12950327 ctaactataaagtgtctcaatttggtccaataagtctt 12950290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 42979493 - 42979536
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||    
T  42979493 tcctctaactataaagtgtttcaatttggtccaataattcttct 42979536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 15613553 - 15613594
Alignment:
Q  104 tctaactataaagtgtctcaatttggtccaataagtcttctt 145  Q
    ||||||||||||||||||||||||||||| |||| |||||||    
T  15613553 tctaactataaagtgtctcaatttggtcccataaatcttctt 15613594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 18678019 - 18678064
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||||    
T  18678019 gatcccctaactataaagtgtctcaatttggtcccataaatcttct 18678064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 18695713 - 18695676
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtcttc 143  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  18695713 taactataaagtgtctcaatttggtcccataagtcttc 18695676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 5384419 - 5384375
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtccaataagtcttc 143  Q
    ||||| |||||||||||||||||||||||||||| |||| |||||    
T  5384419 gatcccctaactataaagtgtctcaatttggtcccataaatcttc 5384375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 7345461 - 7345425
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataa 137  Q
    |||||||||||||||||||||||||||||||| ||||    
T  7345461 tcctctaactataaagtgtctcaatttggtcccataa 7345425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 224657 - 224619
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttc 143  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  224657 ctaactataaagtgtctcaatttggtctcataagtcttc 224619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 42510164 - 42510202
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtcttct 144  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  42510164 taactataaagtgtctcaatttggtcccataaatcttct 42510202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 4566994 - 4567027
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtcc 132  Q
    ||||| ||||||||||||||||||||||||||||    
T  4566994 gatcccctaactataaagtgtctcaatttggtcc 4567027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 12933794 - 12933839
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    ||||| |||||||||||||||||||||||| ||  |||||||||||    
T  12933794 gatcccctaactataaagtgtctcaatttgatctcataagtcttct 12933839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 15510336 - 15510303
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtcc 132  Q
    ||||| ||||||||||||||||||||||||||||    
T  15510336 gatcccctaactataaagtgtctcaatttggtcc 15510303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 8188273 - 8188229
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtccaataagtcttc 143  Q
    |||||| ||||||| |||||| |||||||||||| ||||||||||    
T  8188273 gatcctttaactattaagtgtgtcaatttggtcctataagtcttc 8188229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 40146694 - 40146650
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataagtcttctt 145  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||    
T  40146694 tcctttaactataaagtgtctcaatttggtcccataagtcttctt 40146650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 46796093 - 46796055
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttc 143  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  46796093 ctaactataaagtgtctcaatttggtcccataagtcttc 46796055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 1273500 - 1273463
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    |||||||||||||||||||||||||||| |||||||||    
T  1273500 ctaactataaagtgtctcaatttggtcccataagtctt 1273463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 26393200 - 26393155
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||||| ||||||||||||||||||||||||||| |||| ||||||    
T  26393200 gatcctttaactataaagtgtctcaatttggtcccataactcttct 26393155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 27408811 - 27408852
Alignment:
Q  104 tctaactataaagtgtctcaatttggtccaataagtcttctt 145  Q
    ||||||||||||||||||||||||||||| |||| |||||||    
T  27408811 tctaactataaagtgtctcaatttggtcccataaatcttctt 27408852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 307874 - 307834
Alignment:
Q  103 ctctaactataaagtgtctcaatttggtccaataagtcttc 143  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  307874 ctctaactataaagtgtctcaatttgatcccataagtcttc 307834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 47667225 - 47667265
Alignment:
Q  103 ctctaactataaagtgtctcaatttggtccaataagtcttc 143  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  47667225 ctctaactataaagtgtctcaatttggtctcataagtcttc 47667265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 3533675 - 3533636
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  3533675 ctaactataaagtgtctcaatttggtccgataactcttct 3533636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 33377431 - 33377392
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  33377431 ctaactataaagtgtctcaatttggtcccataaatcttct 33377392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 38553977 - 38554016
Alignment:
Q  104 tctaactataaagtgtctcaatttggtccaataagtcttc 143  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  38553977 tctaactataaagtgtctcaatttggtctcataagtcttc 38554016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 28103552 - 28103514
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtcttct 144  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  28103552 taactataaagtgtctcaatttggtcccataagacttct 28103514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 34438456 - 34438494
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtcttct 144  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  34438456 taactataaagtgtctcaatttggtcccataaatcttct 34438494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 3528240 - 3528273
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagt 139  Q
    ||||||||||||||||||||||||||| ||||||    
T  3528240 taactataaagtgtctcaatttggtcccataagt 3528273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 30683093 - 30683056
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtcttc 143  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  30683093 taactataaagtgtctcaatttggtcccataaatcttc 30683056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 31711137 - 31711178
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    |||| ||||||||||||||||||||||||||  |||||||||    
T  31711137 tcctttaactataaagtgtctcaatttggtctcataagtctt 31711178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 37560366 - 37560329
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  37560366 ctaactataaagtgtctcaatttggtcccataaatctt 37560329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 56000330 - 56000375
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    ||||| ||||||||||||||||||||||| |||| |||| ||||||    
T  56000330 gatcccctaactataaagtgtctcaatttagtcctataactcttct 56000375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 56001335 - 56001302
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataag 138  Q
    |||||||||||||||||||||||||||| |||||    
T  56001335 ctaactataaagtgtctcaatttggtcctataag 56001302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 5687225 - 5687261
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtctt 142  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  5687225 taactataaagtgtctcaatttggtcccataaatctt 5687261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 15787569 - 15787537
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataa 137  Q
    |||||||||||||||||||||||||||| ||||    
T  15787569 ctaactataaagtgtctcaatttggtcccataa 15787537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 26376372 - 26376416
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtccaataagtcttc 143  Q
    ||||| |||||||||||  ||||||||||||||| ||||||||||    
T  26376372 gatcccctaactataaaacgtctcaatttggtcccataagtcttc 26376416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 27410749 - 27410721
Alignment:
Q  105 ctaactataaagtgtctcaatttggtcca 133  Q
    |||||||||||||||||||||||||||||    
T  27410749 ctaactataaagtgtctcaatttggtcca 27410721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 53400235 - 53400271
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtctt 142  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  53400235 taactataaagtgtctcaatttggtcctataaatctt 53400271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1827 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1827
Description:

Target: scaffold1827; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 132
Target Start/End: Complemental strand, 1130 - 1099
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtcc 132  Q
    ||||||||||||||||||||||||||||||||    
T  1130 tcctctaactataaagtgtctcaatttggtcc 1099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 22299970 - 22299931
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  22299970 ctaactataaagtgtctcaatttggtcccataaatcttct 22299931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 31738412 - 31738451
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    ||||||||||||||| |||||||||||| |||||||||||    
T  31738412 ctaactataaagtgtttcaatttggtcccataagtcttct 31738451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 131
Target Start/End: Complemental strand, 19368589 - 19368559
Alignment:
Q  101 tcctctaactataaagtgtctcaatttggtc 131  Q
    |||||||||||||||||||||||||||||||    
T  19368589 tcctctaactataaagtgtctcaatttggtc 19368559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 5311328 - 5311365
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  5311328 ctaactataaagtgtctcaatttggtcctataaatctt 5311365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 8412383 - 8412346
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  8412383 ctaactataaagtgtctcaatttggtcccataaatctt 8412346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 18139560 - 18139527
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtcc 132  Q
    |||||||||||||||||||||||||| |||||||    
T  18139560 gatcctctaactataaagtgtctcaaattggtcc 18139527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 9927655 - 9927687
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataa 137  Q
    |||||||||||||||||||||||||||| ||||    
T  9927655 ctaactataaagtgtctcaatttggtcccataa 9927687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 31740338 - 31740302
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtctt 142  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  31740338 taactataaagtgtctcaatttggtcccataaatctt 31740302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 1625045 - 1625006
Alignment:
Q  103 ctctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  1625045 ctctaactataaagtgtctcaatttggtcctataaatctt 1625006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 2581846 - 2581889
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtccaataagtctt 142  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||    
T  2581846 gatcccctaactataaagtgtctcaatttggtcccataaatctt 2581889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 12852935 - 12852974
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  12852935 ctaactataaagtgtctcaatttggtcccataaatcttct 12852974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 23177723 - 23177762
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  23177723 ctaactataaagtgtctcaatttggtcccataaatcttct 23177762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 23588980 - 23589019
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  23588980 ctaactataaagtgtctcaatttggtcccataaatcttct 23589019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 7037016 - 7037054
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtcttct 144  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  7037016 taactataaagtgtttcaatttggtcccataagtcttct 7037054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 12854170 - 12854132
Alignment:
Q  106 taactataaagtgtctcaatttggtccaataagtcttct 144  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  12854170 taactataaagtgtctcaatttggtcccataaatcttct 12854132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 12958459 - 12958497
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtccaataa 137  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  12958459 gatcccctaactataaagtgtctcaatttggtcccataa 12958497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 2305583 - 2305616
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtcc 132  Q
    ||||| ||||||||||||||||||||||||||||    
T  2305583 gatcccctaactataaagtgtctcaatttggtcc 2305616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 37867799 - 37867832
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtcc 132  Q
    ||||| ||||||||||||||||||||||||||||    
T  37867799 gatcccctaactataaagtgtctcaatttggtcc 37867832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 41796025 - 41795992
Alignment:
Q  99 gatcctctaactataaagtgtctcaatttggtcc 132  Q
    ||||| ||||||||||||||||||||||||||||    
T  41796025 gatcccctaactataaagtgtctcaatttggtcc 41795992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 6706975 - 6707015
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttctt 145  Q
    |||||||||||||||||||||||||| | |||| |||||||    
T  6706975 ctaactataaagtgtctcaatttggttccataaatcttctt 6707015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 42029026 - 42028986
Alignment:
Q  104 tctaactataaagtgtctcaatttggtccaataagtcttct 144  Q
    ||||||||||||||||||| ||||||||| |||| ||||||    
T  42029026 tctaactataaagtgtctcgatttggtcccataattcttct 42028986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 96209 - 96249
Alignment:
Q  105 ctaactataaagtgtctcaatttggtccaataagtcttctt 145  Q
    |||||||||||||||||||||||| ||| |||| |||||||    
T  96209 ctaactataaagtgtctcaatttgatccgataaatcttctt 96249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University