View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16157_high_4 (Length: 332)
Name: NF16157_high_4
Description: NF16157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16157_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 24001419 - 24001113
Alignment:
| Q |
13 |
gagatgaaagtgttccatgacttgctcagacatttgaattttaagatgtttttaacagtaaggtgagataggatttctgctatgagttcgtctgggagga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24001419 |
gagatgaaagtgttccatgacttgctcagacatttgaatattaagatgtttttaacagtaaggtgagataggatttctgctatgagttcgtctgggagga |
24001320 |
T |
|
| Q |
113 |
acaaagtctgcttgcataggtcatgaagtcgtagctttttatttgcaggggtatccatcatcaaagtatagtgaagttgaagaaattgaaaaaccctaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24001319 |
acaaagtctgcttgcataggtcatgaagtcgtagctttttatttgcaggggtatccatcatcaaagtatagtgaggttgaagaaattgaaaaaccctaac |
24001220 |
T |
|
| Q |
213 |
aca--------tatcaacgcaaatccattctgcaaatgcggcaagagagttgaaaaaaccctaacacgtaccaccaaactcagttgtgcaatgctatata |
304 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24001219 |
acatgcaactctatcaacgcaaatccattctgcaaatgcggcaagagagttgaacaaaccctaacacgtaccaccaaactcagttgtgcaatgctatata |
24001120 |
T |
|
| Q |
305 |
taactat |
311 |
Q |
| |
|
||||||| |
|
|
| T |
24001119 |
taactat |
24001113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 24009603 - 24009303
Alignment:
| Q |
13 |
gagatgaaagtgttccatgacttgctcagacatttgaattttaagatgtttttaacagtaaggtgagataggatttctgctatgagttcgtctgggagga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24009603 |
gagatgaaagtgttccatgacttgctcaaacattttaattttaacatgtttttaacgctaaggtgagataggatttctgctatgagttcatctgggagga |
24009504 |
T |
|
| Q |
113 |
acaaagtctgcttgcataggtcatgaagtcgtagctttttatttgcaggggtatccatcatcaaagtatagtgaagttgaagaa-attgaaaaaccctaa |
211 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||| | |||||||||||| |||| || ||||| ||||||||||| || ||||||||||| |
|
|
| T |
24009503 |
acaaagtctgcttggataggtcatgaagtcgtatctttttattcggaggggtatccataatcatagaatagttaagttgaagaagatgaaaaaaccctaa |
24009404 |
T |
|
| Q |
212 |
aaca--------tatcaacgcaaatccattctgcaaatgcggcaagagagttgaaaaaaccctaacacgtaccaccaaactcagttgtgcaatgctatat |
303 |
Q |
| |
|
||| |||||| ||| ||| |||||||||||||||| |||||||| | |||||||||| |||| |||||||||| ||||||| |||||||| |
|
|
| T |
24009403 |
cacatgcaactctatcaaagcagatcaattctgcaaatgcggcgagagagttaacaaaaccctaagacgt---accaaactcaattgtgcattgctatat |
24009307 |
T |
|
| Q |
304 |
ataa |
307 |
Q |
| |
|
|||| |
|
|
| T |
24009306 |
ataa |
24009303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 29917432 - 29917397
Alignment:
| Q |
277 |
accaaactcagttgtgcaatgctatatataactatt |
312 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29917432 |
accaaactaagttgtgcaatgctatatataactatt |
29917397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 23839925 - 23839887
Alignment:
| Q |
13 |
gagatgaaagtgttccatgacttgctcagacatttgaat |
51 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
23839925 |
gagatgagagtgttccatgacttgctcacacatttgaat |
23839887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 11359889 - 11359921
Alignment:
| Q |
13 |
gagatgaaagtgttccatgacttgctcagacat |
45 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
11359889 |
gagatgagagtgttccatgacttgctcagacat |
11359921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University