View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16157_low_1 (Length: 611)
Name: NF16157_low_1
Description: NF16157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16157_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 6 - 592
Target Start/End: Original strand, 32096002 - 32096588
Alignment:
| Q |
6 |
tgagatggacatcatcattctggttttggcaaagtcaccgttgatccaaatatatatttggattaacaataagtttgacagaatcacactataccactat |
105 |
Q |
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| T |
32096002 |
tgagattgacataatcattctgattttggcaaattcaccgttgattcaaacatatatttggattaacaataagtttgacagaatcacactgtaccactat |
32096101 |
T |
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| Q |
106 |
tgttttgtcaaaaatcactctttaaaactttaagaaaatcacgatatcactgtgattttatcaaactcatcgtcaatttcaatcatgcactaaatgttgt |
205 |
Q |
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| T |
32096102 |
tgttttgccaaaaattactctttaaaactttaaaaaaattacgatatcactgtgattttatcaaactcatcgtcaatttcaatcatgcactaaatgttgt |
32096201 |
T |
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| Q |
206 |
gaggtataatttggttaagtgctctcttaacttcaacaatactaactttcttcccatttccaccattttccttcaccttagccctcaactccgcaacaaa |
305 |
Q |
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| T |
32096202 |
gaggtataatttggttaagtgctctcttaacttccacaatactaactttcttcccatttccaccattttccttcaccttagccctcaactccgcaacaaa |
32096301 |
T |
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| Q |
306 |
aacaccattattaagcgaagattgaactccaataacctcaatcctcaactccctcaacattaccataacatcaagcaacaatccttctctatgcaaacac |
405 |
Q |
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| T |
32096302 |
aacaccattattaagcgaagattgaactccaataacctcaatcctcaactccctcaacattaccataacgtcaagcaacaatccttctctatgcaaacac |
32096401 |
T |
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| Q |
406 |
tcaatctccaacaaagcatcactctcaataatcgaaacctgaaccgacgaaacaacctccgtctcaactgctttcgctctcgtggctccacactcttcca |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32096402 |
tcaatctccaacaaagcatcactctcaataatcgaaacctgaaccgacgaaacaacctccgtctcaactgctttcgctctcgtggctccacactcttcca |
32096501 |
T |
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| Q |
506 |
caatcctcacctttttcttatctgttggacccaccaaaaccgttacaccactcctactttgttgttcaatctctatctgacggttac |
592 |
Q |
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| T |
32096502 |
caatcctcacctttttcttatctgttggacccaccaaaaccgttacaccactcctactttgttgttcagtctctatctgacggttac |
32096588 |
T |
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