View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16157_low_10 (Length: 239)
Name: NF16157_low_10
Description: NF16157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16157_low_10 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 31034330 - 31034542
Alignment:
| Q |
11 |
ttattctcgtcgagtaaatgcaagacgcataaacactcgcggaaaaagcaaaaacagttacaatcgatgccacatatatacagaacacctctaaaacaaa |
110 |
Q |
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| T |
31034330 |
ttattctcgtcgagtaaatgcaagacgcataaacactcgcggaaaaagcaaaaacagttacaatcgatgccacatatatacagaacacctctaaaacaaa |
31034429 |
T |
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| Q |
111 |
caccctaaacttccaaaataacgaggccggagtatgcatacggacaataaccatctgcatactcatgcctcactatcccaattgcaagaagtctcaggta |
210 |
Q |
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| T |
31034430 |
caccctaaacttccaaaataatgaggccggagtatgcatacggacaataaccatctgcatactcatgcctcactatcccaattgcaagaagtctcaggta |
31034529 |
T |
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| Q |
211 |
cccaacaaaaaac |
223 |
Q |
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| T |
31034530 |
ctcaacaaaaaac |
31034542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 24019009 - 24018962
Alignment:
| Q |
10 |
attattctcgtcgagtaaatgcaagacgcataaacactcgcggaaaaa |
57 |
Q |
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| T |
24019009 |
attattcttgtcgagtaaatgcaagacgcataaacactcgcggaaaaa |
24018962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 188
Target Start/End: Complemental strand, 60255 - 60073
Alignment:
| Q |
10 |
attattctcgtcgagtaaatgcaagacgcataaacactcgcggaaaaagc--aaaaacagttacaatcgatgccacatatatacagaacacctctaaaa- |
106 |
Q |
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| T |
60255 |
attattctcatcgaataaatgctagacgcatagacactcgcggaaaaaaactaaaagcgaatacaattggcgccgcatatatacggaacacctccaaaaa |
60156 |
T |
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| Q |
107 |
caaacaccctaaacttccaaaataacgaggccggagtatgcatacggacaata-accatctgcatactcatgcctcactatcc |
188 |
Q |
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| T |
60155 |
caaacaccaaaaacaacccaaataatgaggccggagtatacaaatggacaaggcaccatctgcatacccatgcctcactatcc |
60073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 46282736 - 46282690
Alignment:
| Q |
11 |
ttattctcgtcgagtaaatgcaagacgcat-aaacactcgcggaaaa |
56 |
Q |
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| T |
46282736 |
ttattctcgtcgagtaaatgcaagacacataaaaaactcgcggaaaa |
46282690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 11156006 - 11155960
Alignment:
| Q |
11 |
ttattctcgtcgagtaaatgcaagacgcataaacactcgcggaaaaa |
57 |
Q |
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| T |
11156006 |
ttattcacgtcgagtaaatgcaaggcgcataaaaactcgcggcaaaa |
11155960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 8503944 - 8503976
Alignment:
| Q |
11 |
ttattctcgtcgagtaaatgcaagacgcataaa |
43 |
Q |
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| T |
8503944 |
ttattctcgtcgagtaaatgcaaggcgcataaa |
8503976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 42339893 - 42339857
Alignment:
| Q |
21 |
cgagtaaatgcaagacgcataaacactcgcggaaaaa |
57 |
Q |
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|||| |||||||||| ||||||||||||||||||||| |
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| T |
42339893 |
cgagaaaatgcaagaagcataaacactcgcggaaaaa |
42339857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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