View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16157_low_7 (Length: 282)
Name: NF16157_low_7
Description: NF16157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16157_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 43 - 271
Target Start/End: Complemental strand, 31034189 - 31033963
Alignment:
| Q |
43 |
tgttgtaagaagtctgagagtcgagaaatgaagaacattaaggttttatcctataaatagtttttcactcagtcgatgaccatgttctacaaatgatgtg |
142 |
Q |
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| T |
31034189 |
tgttgtaagaagtctgagagtcgagaaatgaagaacattaaggttttatcctatacatagtttttcactcggttgatgacctagttctacaaatgatgtg |
31034090 |
T |
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| Q |
143 |
ttgattttgaatgttatttttgaaagtagttccctttgatttcagcagttggttttctttcttgctttgagactatatttattc-tcaatttaattcctc |
241 |
Q |
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| T |
31034089 |
ttgattttgaatg---ttttacaaagtagttcccattgatttcagcagttgtttttctttcttgctttgagactatatttattcttcaatttaattcctc |
31033993 |
T |
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| Q |
242 |
tttgcatctcagaggaaaatctctacctat |
271 |
Q |
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| T |
31033992 |
tttgcatctcagaggaaaatctctacctat |
31033963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 31052537 - 31052371
Alignment:
| Q |
43 |
tgttgtaagaagtctgagagtcgagaaatg---aagaacattaaggttttatcctataaatagtttttcactcagtcgatgaccatgttctacaaatgat |
139 |
Q |
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| T |
31052537 |
tgttgtaagaagtctgagagtcgagaaatggtgaagaacattaaggttttatcctataaatagtttttcactcagtcgatgaccatgttctacaaatgat |
31052438 |
T |
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| Q |
140 |
gtgttgattttgaatgttatttttgaaagtagttccctttgatttcagcagttggttttctttcttg |
206 |
Q |
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| T |
31052437 |
gtgttgattttgaatgttatttttcaaagtagttccctttgatttcagcagttgtttttctttcttg |
31052371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 31034277 - 31034221
Alignment:
| Q |
17 |
cttctcaaaactagatctcaaattttt-gttgtaagaagtctgagagtcgagaaatg |
72 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31034277 |
cttctcaaaactagatctcaaattttttgttgtaagaagtctgagagtcgagaaatg |
31034221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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