View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16158_high_1 (Length: 416)
Name: NF16158_high_1
Description: NF16158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16158_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 195 - 412
Target Start/End: Original strand, 2818057 - 2818274
Alignment:
| Q |
195 |
ttaggaaaacctttttcgtggtaatataattcattttagcttcgtaaagnnnnnnnnntcatcctaatgttgttcatgatttggagatattgcataattt |
294 |
Q |
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| T |
2818057 |
ttaggaaagcctttttcgtggtaatataatttattttagcttcgtaaaaaaaaaaaatgcatcctaatattgctcatgacttggagatattgcataattt |
2818156 |
T |
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| Q |
295 |
aaaaattaaagatcatagagaaacaaacataagatatatacatatgaggaatagagaggacacttattaaatatttgtagaatgttataccgttatatac |
394 |
Q |
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| T |
2818157 |
aaaaattaaagatcatagagaaacaaacataagatatatacatatgaggaatagagagtacacttattaaatatttgtagaatgttatatcgttatatac |
2818256 |
T |
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| Q |
395 |
gcgtgagttcatctcagt |
412 |
Q |
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| T |
2818257 |
gcgtgagttcaactcagt |
2818274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 38409151 - 38409254
Alignment:
| Q |
131 |
gccttgtaaatattgtttaaactttgttttaattttggtgttttcttcctaggcacattttatattaggaaaacctttt-tcgtggtaatataattcatt |
229 |
Q |
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| T |
38409151 |
gccttgtaattattgtttatactttgttttgattctggtgttt-cttcctcgacacaacttatgttaggaaggccttttgttgtggtaatataattcatt |
38409249 |
T |
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| Q |
230 |
ttagc |
234 |
Q |
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||||| |
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| T |
38409250 |
ttagc |
38409254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 36179073 - 36179136
Alignment:
| Q |
173 |
ttcttcctaggcacattttatattaggaaaacctttt--tcgtggtaatataattcattttagc |
234 |
Q |
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| T |
36179073 |
ttcttccttagcacaccttatattaggaaaacctttttgttgtggtaatacaattcattttagc |
36179136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 13137253 - 13137344
Alignment:
| Q |
143 |
ttgtttaaactttgttttaattttggtgttttcttcctaggcacattttatattaggaaaacctttt-tcgtggtaatataattcattttagc |
234 |
Q |
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| T |
13137253 |
ttgtttataccttgttttgtctttggtgttt-cttcctcggcacatcttgtgctaggaagaccttttgttgtggtaatataattcattttagc |
13137344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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