View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16158_low_2 (Length: 344)
Name: NF16158_low_2
Description: NF16158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16158_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 34 - 336
Target Start/End: Complemental strand, 10470266 - 10469964
Alignment:
| Q |
34 |
gatttctttattttctctgatttgaaggtatctctgcggcgaaagtgttagctgagaacggcgtggaagacatagtgatcctggaagcgtcggacagaat |
133 |
Q |
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| T |
10470266 |
gatttctttattttctcttatttgaaggtatctccgcggcgaaagtgttatctgagaacggcgtagaagacatagtgatgcttgaagcgtcggaccgaat |
10470167 |
T |
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| Q |
134 |
cggcggcaggatccggaaggaatgtttcggtggcgtgtcggtggaactcggtgctggttggatcgccggtgttggaggtcgtgaagttaatcctgtttgg |
233 |
Q |
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| T |
10470166 |
cggcggcaggatccgtaaggaatgtttcggtggcgtgtcggtggaactcggtgctggttggatcgccggtgttggaggtcgtgaagctaatcctgtttgg |
10470067 |
T |
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| Q |
234 |
gaactcgctgatcaacataatctcaaaacgtgcttttctgattatagcaatgctcgcttcaacatctatgatcaaaggttcgtgaaattcatcacattca |
333 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10470066 |
gaactcgctgttcaacataatctcaaaacgtgcttttctgattatagcaatgctcgcttcaacatctatgatcaaaggttcgtgaaattcatcacattca |
10469967 |
T |
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| Q |
334 |
ttt |
336 |
Q |
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||| |
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| T |
10469966 |
ttt |
10469964 |
T |
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