View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16158_low_3 (Length: 211)

Name: NF16158_low_3
Description: NF16158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16158_low_3
NF16158_low_3
[»] chr7 (6 HSPs)
chr7 (1-191)||(47233834-47234035)
chr7 (1-92)||(5768076-5768167)
chr7 (1-92)||(25419587-25419678)
chr7 (1-92)||(39066882-39066973)
chr7 (1-189)||(44393598-44393798)
chr7 (38-94)||(47932968-47933024)
[»] scaffold0516 (1 HSPs)
scaffold0516 (1-189)||(3178-3377)
[»] chr3 (6 HSPs)
chr3 (1-191)||(35870272-35870473)
chr3 (1-134)||(48266264-48266394)
chr3 (5-92)||(52349765-52349852)
chr3 (1-189)||(26215215-26215415)
chr3 (38-94)||(5884416-5884472)
chr3 (38-94)||(54945770-54945826)
[»] chr5 (5 HSPs)
chr5 (1-92)||(36991082-36991173)
chr5 (1-191)||(21605079-21605280)
chr5 (1-94)||(37302000-37302093)
chr5 (137-192)||(37302147-37302202)
chr5 (150-191)||(11386828-11386869)
[»] chr8 (8 HSPs)
chr8 (1-191)||(8150503-8150704)
chr8 (1-89)||(4138366-4138454)
chr8 (1-73)||(10186412-10186484)
chr8 (1-189)||(20171888-20172088)
chr8 (137-191)||(4138246-4138300)
chr8 (1-52)||(918967-919018)
chr8 (137-189)||(11428277-11428329)
chr8 (137-191)||(10186283-10186337)
[»] chr6 (2 HSPs)
chr6 (1-92)||(13433465-13433556)
chr6 (38-94)||(16857241-16857297)
[»] chr4 (14 HSPs)
chr4 (1-92)||(2505013-2505104)
chr4 (5-90)||(2500660-2500745)
chr4 (1-90)||(46092344-46092433)
chr4 (1-90)||(46134869-46134958)
chr4 (1-94)||(53830517-53830610)
chr4 (1-86)||(20036328-20036413)
chr4 (1-191)||(34737811-34738012)
chr4 (1-191)||(21802825-21803026)
chr4 (1-191)||(21632781-21632983)
chr4 (1-92)||(5430749-5430843)
chr4 (137-191)||(53830668-53830722)
chr4 (137-189)||(5430640-5430692)
chr4 (38-94)||(43943471-43943527)
chr4 (150-191)||(26382397-26382438)
[»] chr2 (5 HSPs)
chr2 (1-92)||(7574103-7574194)
chr2 (1-92)||(16668698-16668789)
chr2 (1-191)||(41646720-41646918)
chr2 (1-52)||(43564238-43564289)
chr2 (1-52)||(29455448-29455499)
[»] chr1 (6 HSPs)
chr1 (1-92)||(13786268-13786359)
chr1 (1-91)||(25807784-25807874)
chr1 (1-189)||(23726037-23726235)
chr1 (1-94)||(22912540-22912632)
chr1 (137-190)||(22912687-22912740)
chr1 (147-193)||(23727848-23727894)
[»] scaffold0182 (1 HSPs)
scaffold0182 (38-94)||(10164-10220)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 47233834 - 47234035
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtgnnnnnn 100  Q
    |||||||||||||||||||||||  || |||||||||||||| |||||||||||||||| |||| ||||||||||||  |||||||||| ||||          
T  47233834 tatgaataattttaaaatgtaaccccttaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatgaagtg--tttt 47233931  T
Q  101 ngcaattcatggaaaatgaaagatagatagtaag-------------aaaatcaagaacaaaagagagccacgtgacataagtatgagagattagttaca 187  Q
     |||| | ||||||||||||||||||||||||||             | |||||||||||||||| |||||| ||||||||||||||||||||||||| |    
T  47233932 tgcaactgatggaaaatgaaagatagatagtaaggaatgactagtaaagaatcaagaacaaaagatagccacatgacataagtatgagagattagttaga 47234031  T
Q  188 aagg 191  Q
    ||||    
T  47234032 aagg 47234035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 5768076 - 5768167
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggag 92  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||| ||||||||||||  |||||||||||||    
T  5768076 tatgaataattttaaaatgtaacccctcaatattaataaaattgattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggag 5768167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 25419587 - 25419678
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggag 92  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||| ||||||||||||  |||||||||||||    
T  25419587 tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggag 25419678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 39066882 - 39066973
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggag 92  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||| ||||||||||||  |||||||||||||    
T  39066882 tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggag 39066973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 44393798 - 44393598
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtgnnnnnn 100  Q
    ||||||||||||||||||| |||  |||| |||||||||||| ||||||||| |||||| |||| ||||| ||||||  ||||||||| ||| |          
T  44393798 tatgaataattttaaaatgaaacccctcactattaataaaatggattataatacattcattgtgtaacttccatgaagtgaagtaaatagagagtttttc 44393699  T
Q  101 ngcaattcatggaaaatgaaaga-tagatagtaagaa-------------aatcaagaacaaaagagagccacgtgacataagtatgagagattagttac 186  Q
      ||||| |||| |||||||||| |||||||||||||             ||||||||||||||||||||||| |||||||||||| | | |||||||||    
T  44393698 --caattgatgggaaatgaaagattagatagtaagaaatgactagtaaagaatcaagaacaaaagagagccacatgacataagtataaaaaattagttac 44393601  T
Q  187 aaa 189  Q
    |||    
T  44393600 aaa 44393598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 47932968 - 47933024
Alignment:
Q  38 aaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtg 94  Q
    |||||| ||||||||||||||| ||| |||||||||||||  |||||||||| ||||    
T  47932968 aaaatatattataatgcattcattgtacaacttgcatgaagtgaagtaaatgcagtg 47933024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 3377 - 3178
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtgnnnnnn 100  Q
    ||||||||||||||||||||||| ||| |||||||||||||| ||||||||| || ||| |||||||||||||||||  |||||||||| ||||          
T  3377 tatgaataattttaaaatgtaaccgcttaatattaataaaatggattataattcaatcattgtgcaacttgcatgaagtgaagtaaatgaagtg--tttt 3280  T
Q  101 ngcaattcatggaaaatgaaagatagatagt-aagaa------------aatcaagaacaaaagagagccacgtgacataagtatgagagattagttaca 187  Q
     |||| | |||| |||||||||||| ||||| |||||            ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3279 tgcaactgatgggaaatgaaagataaatagtaaagaatggctagtaaagaatcaagaacaaaagagagccacatgacataagtatgagagattagttaca 3180  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 35870473 - 35870272
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtgnnnnnn 100  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||| ||||||||||||  ||||||||||||| |          
T  35870473 tatgaataattttaaaatgtaacctctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagag--tttt 35870376  T
Q  101 ngcaattcatggaaaatgaaagatagatagtaag-------------aaaatcaagaacaaaagagagccacgtgacataagtatgagagattagttaca 187  Q
     |||| | ||||||||||||||||||||||||||             | ||||||||| |||||| |||||| || |||||||||||||||||||||| |    
T  35870375 cgcaactgatggaaaatgaaagatagatagtaaggaatgactagtaaagaatcaagaagaaaagatagccacatggcataagtatgagagattagttaga 35870276  T
Q  188 aagg 191  Q
    ||||    
T  35870275 aagg 35870272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 48266394 - 48266264
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtgnnnnnn 100  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||| |||||||||||| | |||||||||||| |          
T  48266394 tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaa-gtaagtaaatggagag--tttt 48266298  T
Q  101 ngcaattcatggaaaatgaaagatagatagtaag 134  Q
     |||| | ||||||||||||||||||||||||||    
T  48266297 tgcaactgatggaaaatgaaagatagatagtaag 48266264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 52349852 - 52349765
Alignment:
Q  5 aataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggag 92  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||| ||||||||||||  |||||||||||||    
T  52349852 aataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggag 52349765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 26215415 - 26215215
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtgnnnnnn 100  Q
    |||||||||||||||||||||||  |||  |||||||||||| ||||||||  |||||| |||| ||||| ||||||  ||||||||||||| |          
T  26215415 tatgaataattttaaaatgtaacccctcgctattaataaaatggattataacacattcattgtgtaacttccatgaagtgaagtaaatggagagtttttc 26215316  T
Q  101 ngcaattcatggaaaatgaaagat-agatagtaagaaa-------------atcaagaacaaaagagagccacgtgacataagtatgagagattagttac 186  Q
      ||||| |||||||||||||||| |||||||||| ||             |||||||||||||||||||||| || |||||||||||||||||||||||    
T  26215315 --caattgatggaaaatgaaagattagatagtaaggaatggctagcaaagaatcaagaacaaaagagagccacatggcataagtatgagagattagttac 26215218  T
Q  187 aaa 189  Q
    |||    
T  26215217 aaa 26215215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 5884416 - 5884472
Alignment:
Q  38 aaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtg 94  Q
    |||||| ||||||||||||||| ||| |||||||||||||  |||||||||| ||||    
T  5884416 aaaatatattataatgcattcattgtacaacttgcatgaagtgaagtaaatgcagtg 5884472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 54945770 - 54945826
Alignment:
Q  38 aaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtg 94  Q
    |||||| ||||||||||||||| ||| |||||||||||||  |||||||||| ||||    
T  54945770 aaaatatattataatgcattcattgtacaacttgcatgaagtgaagtaaatgcagtg 54945826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 1e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 36991173 - 36991082
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggag 92  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||| ||||||||||||  |||||||||||||    
T  36991173 tatgaataattttaaaatgtaacccctcaatattaataaaatagattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggag 36991082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 21605079 - 21605280
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtgnnnnnn 100  Q
    |||||||||||||||||| ||||  ||||||||||||||||| |||||||||||||||| |||| ||||||||||||  |||||||||| ||||          
T  21605079 tatgaataattttaaaatttaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatgaagtg--tttt 21605176  T
Q  101 ngcaattcatggaaaatgaaagatagatagtaag-------------aaaatcaagaacaaaagagagccacgtgacataagtatgagagattagttaca 187  Q
     |||    ||||||||||||||||||||||||||             | |||||||||||||||| |||||| ||||||||||||||||||||||||| |    
T  21605177 tgcagccaatggaaaatgaaagatagatagtaaggaatgactaataaagaatcaagaacaaaagatagccacatgacataagtatgagagattagttaga 21605276  T
Q  188 aagg 191  Q
    ||||    
T  21605277 aagg 21605280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 37302000 - 37302093
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtg 94  Q
    |||||||||||||||||||||||    || |||||||||||| |||||||||||||||| |||| ||||||||||||  |||||||||||||||    
T  37302000 tatgaataattttaaaatgtaaccctccattattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtg 37302093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 37302147 - 37302202
Alignment:
Q  137 aatcaagaacaaaagagagccacgtgacataagtatgagagattagttacaaagga 192  Q
    |||||||||||||||||| |||| || ||||||||| |||||||||||| ||||||    
T  37302147 aatcaagaacaaaagagatccacatggcataagtataagagattagttagaaagga 37302202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 11386869 - 11386828
Alignment:
Q  150 agagagccacgtgacataagtatgagagattagttacaaagg 191  Q
    |||||||||| || ||||||||||||||||| ||||||||||    
T  11386869 agagagccacatggcataagtatgagagattggttacaaagg 11386828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 8150503 - 8150704
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtgnnnnnn 100  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||| |||| |||| ||  |||||||||||||||          
T  8150503 tatgaataattttaaaatgtaacccctcaatattaataaaattgattataatgcattcattgtgtaactcgcataaagtgaagtaaatggagtg--tttt 8150600  T
Q  101 ngcaattcatggaaaatgaaagatagatagtaagaa-------------aatcaagaacaaaagagagccacgtgacataagtatgagagattagttaca 187  Q
     |||| | |||| |||||||||||||||||||||||             ||||||||||||||| ||| ||| || |||||||||||||||||||||| |    
T  8150601 tgcaactgatgggaaatgaaagatagatagtaagaaatggctagtaaagaatcaagaacaaaagtgagtcacatggcataagtatgagagattagttaga 8150700  T
Q  188 aagg 191  Q
    ||||    
T  8150701 aagg 8150704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 4138454 - 4138366
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatg 89  Q
    |||||| |||||||||| |||||  |||||||||||||||||||||||||||||||||| |||| |||||||| |||  ||||||||||    
T  4138454 tatgaacaattttaaaacgtaacccctcaatattaataaaatagattataatgcattcattgtgtaacttgcaagaagtgaagtaaatg 4138366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 10186484 - 10186412
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgca 73  Q
    |||||| ||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||| ||||||||    
T  10186484 tatgaacaattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgca 10186412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 20172088 - 20171888
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtgnnnnnn 100  Q
    ||||||||||||||||||| |||  |||| |||||||||||| ||||||||| |||||| |||| ||||| ||||||  ||||||||| ||| |          
T  20172088 tatgaataattttaaaatgaaacccctcactattaataaaatggattataatacattcattgtgtaacttccatgaagtgaagtaaatagagagtttttc 20171989  T
Q  101 ngcaattcatggaaaatgaaaga-tagatagtaagaa-------------aatcaagaacaaaagagagccacgtgacataagtatgagagattagttac 186  Q
      ||||| |||| |||||||||| |||||||||||||             ||||||||||||||||||||||| |||||||||||| | | |||||||||    
T  20171988 --caattgatgggaaatgaaagattagatagtaagaaatgactagtaaagaatcaagaacaaaagagagccacatgacataagtataaaaaattagttac 20171891  T
Q  187 aaa 189  Q
    |||    
T  20171890 aaa 20171888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 4138300 - 4138246
Alignment:
Q  137 aatcaagaacaaaagagagccacgtgacataagtatgagagattagttacaaagg 191  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||| |||||    
T  4138300 aatcaagaacaaaagagagccacttggcataagtatgagagattagttagaaagg 4138246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 918967 - 919018
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataat 52  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||||    
T  918967 tatgaataattttaaaatgtaacccctcaatattaataaaatggattataat 919018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 11428277 - 11428329
Alignment:
Q  137 aatcaagaacaaaagagagccacgtgacataagtatgagagattagttacaaa 189  Q
    |||||||||||||||||||||||  | ||||||||||| | ||||||||||||    
T  11428277 aatcaagaacaaaagagagccacaaggcataagtatgaaaaattagttacaaa 11428329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 10186337 - 10186283
Alignment:
Q  137 aatcaagaacaaaagagagccacgtgacataagtatgagagattagttacaaagg 191  Q
    ||||||||||||||||||| ||| || |||||||| |||| |||||||| |||||    
T  10186337 aatcaagaacaaaagagagtcacttggcataagtaagagatattagttagaaagg 10186283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 13433465 - 13433556
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggag 92  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||| ||||||||||||  |||||||||||||    
T  13433465 tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggag 13433556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 16857297 - 16857241
Alignment:
Q  38 aaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtg 94  Q
    |||||| ||||||||||||||| ||| |||||||||||||  |||||||||| ||||    
T  16857297 aaaatatattataatgcattcattgtacaacttgcatgaagtgaagtaaatgcagtg 16857241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 2505013 - 2505104
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggag 92  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||| ||||||||||||  |||||||||||||    
T  2505013 tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggag 2505104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 2500660 - 2500745
Alignment:
Q  5 aataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatgg 90  Q
    ||||||||||||||||||| || ||||||||||||||| |||||||||||||||| |||||||||||||||||  |||||||||||    
T  2500660 aataattttaaaatgtaaccgcacaatattaataaaatggattataatgcattcattgtgcaacttgcatgaagtgaagtaaatgg 2500745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 46092433 - 46092344
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatgg 90  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||| ||||||||||||  |||||||||||    
T  46092433 tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatgg 46092344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 46134958 - 46134869
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatgg 90  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||| ||||||||||||  |||||||||||    
T  46134958 tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatgg 46134869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 53830517 - 53830610
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtg 94  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||| ||||||||||||  ||||||||| |||||    
T  53830517 tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatagagtg 53830610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 20036413 - 20036328
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaa 86  Q
    ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||| | |||||||||||||||  |||||||    
T  20036413 tatgattaattttaaaatgtaactgctcaatattaataaaatgaattataatgcattcattatgcaacttgcatgaagtgaagtaa 20036328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 34737811 - 34738012
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtgnnnnnn 100  Q
    |||||||||||||||||||||||  |||| | |||||||||| |||||||||||||||| |||| ||||||||||||  |||||| ||||||||          
T  34737811 tatgaataattttaaaatgtaacccctcattgttaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtagatggagtg--tttt 34737908  T
Q  101 ngcaattcatggaaaatgaaagatagatagta-------------agaaaatcaagaacaaaagagagccacgtgacataagtatgagagattagttaca 187  Q
     |||| | |||||||||||||||||||| |||             | | |||||||||||||||||| |||| || |||||||||||||||||||||| |    
T  34737909 tgcaactgatggaaaatgaaagatagattgtacggaatggctagtaaagaatcaagaacaaaagagatccacatggcataagtatgagagattagttaga 34738008  T
Q  188 aagg 191  Q
    ||||    
T  34738009 aagg 34738012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 21803026 - 21802825
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtgnnnnnn 100  Q
    |||||| |||||||||| |||||  ||||||||||||||||| |||||||||||||||| |||| |||||||| |||  |||||||||| | ||          
T  21803026 tatgaacaattttaaaacgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcaagaagtgaagtaaatgaaatg--tttt 21802929  T
Q  101 ngcaattcatggaaaatgaaagatagatagtaa-gaa------------aatcaagaacaaaagagagccacgtgacataagtatgagagattagttaca 187  Q
     |||| | || | |||||||||||||||||||| |||            ||||||||||||||||||||||| || |||||||||||||||||||||| |    
T  21802928 tgcaactgataggaaatgaaagatagatagtaatgaatggctagtaaagaatcaagaacaaaagagagccacttggcataagtatgagagattagttaga 21802829  T
Q  188 aagg 191  Q
    ||||    
T  21802828 aagg 21802825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 21632781 - 21632983
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtgnnnnnn 100  Q
    |||||| ||||||||||  ||||  ||||||||||||||||| ||| ||||||||||||  ||| |||||||| |||  |||||||||| | ||          
T  21632781 tatgaacaattttaaaacataacccctcaatattaataaaatggatcataatgcattcatcgtgtaacttgcaagaagtgaagtaaatgaaatgtttttt 21632880  T
Q  101 ngcaattcatggaaaatgaaagatagatagtaagaaa-------------atcaagaacaaaagagagccacgtgacataagtatgagagattagttaca 187  Q
     |||| | || ||||||||||||||||||||||| ||             |||||||||||||||| ||||| || |||||||||||||||||||||| |    
T  21632881 -gcaactgatagaaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagcgccacttggcataagtatgagagattagttaga 21632979  T
Q  188 aagg 191  Q
    ||||    
T  21632980 aagg 21632983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 5430843 - 5430749
Alignment:
Q  1 tatgaataattttaaaatgtaactgctc---aatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggag 92  Q
    |||||||||||||||||||||||  |||   | |||||||||||| ||||||||| |||||| |||| ||||| ||||||  |||||||||||||    
T  5430843 tatgaataattttaaaatgtaacccctcactattattaataaaatggattataatacattcattgtgtaacttccatgaagtgaagtaaatggag 5430749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 53830668 - 53830722
Alignment:
Q  137 aatcaagaacaaaagagagccacgtgacataagtatgagagattagttacaaagg 191  Q
    |||||||||||||||| |||||| || |||||||||||||||||||||| |||||    
T  53830668 aatcaagaacaaaagatagccacatggcataagtatgagagattagttaaaaagg 53830722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 5430692 - 5430640
Alignment:
Q  137 aatcaagaacaaaagagagccacgtgacataagtatgagagattagttacaaa 189  Q
    ||||||||||||||||||||||| || ||||||||||| | ||||||||||||    
T  5430692 aatcaagaacaaaagagagccacatggcataagtatgaaaaattagttacaaa 5430640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 43943527 - 43943471
Alignment:
Q  38 aaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtg 94  Q
    |||||| ||||||||||||||| ||| |||||||||||||  |||||||||| ||||    
T  43943527 aaaatatattataatgcattcattgtacaacttgcatgaagtgaagtaaatgcagtg 43943471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 26382438 - 26382397
Alignment:
Q  150 agagagccacgtgacataagtatgagagattagttacaaagg 191  Q
    |||||||||| || ||||||||||||||||| ||||||||||    
T  26382438 agagagccacatggcataagtatgagagattggttacaaagg 26382397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 7574103 - 7574194
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggag 92  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||| ||||||||||||  |||||||||||||    
T  7574103 tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggag 7574194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 16668698 - 16668789
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggag 92  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| | || ||||||||||||  |||||||||||||    
T  16668698 tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattatgtaacttgcatgaagtgaagtaaatggag 16668789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 41646720 - 41646918
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtgnnnnnn 100  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||| ||| |||||| |||| ||||||||||||  |||||||||||||||          
T  41646720 tatgaataattttaaaatgtaacccctcaatattaataaaatggattaaaatacattcattgtgtaacttgcatgaaatgaagtaaatggagtgttttt- 41646818  T
Q  101 ngcaattcatggaaaatgaaagata-----------gatagtaagaaaatcaagaacaaaagagagccacgtgacataagtatgagagattagttacaaa 189  Q
     ||||   |||||||||||||||||           | |||||| | |||||||||||||||| |||||| || |||||||||||||||||||||| |||    
T  41646819 -gcaaccgatggaaaatgaaagataagtaaggaatggctagtaa-agaatcaagaacaaaagatagccacatggcataagtatgagagattagttaaaaa 41646916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 43564289 - 43564238
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataat 52  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||||    
T  43564289 tatgaataattttaaaatgtaacccctcaatattaataaaatggattataat 43564238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 29455499 - 29455448
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataat 52  Q
    |||||||||||||||||||||||  ||| ||||||||||||| |||||||||    
T  29455499 tatgaataattttaaaatgtaacccctcgatattaataaaatggattataat 29455448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 13786359 - 13786268
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggag 92  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||| ||||||||||||  |||||||||||||    
T  13786359 tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggag 13786268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 25807784 - 25807874
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatgga 91  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||| ||||||||||||  ||||||||||||    
T  25807784 tatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatgga 25807874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 23726037 - 23726235
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtgnnnnnn 100  Q
    |||||||||||| |||||||||| | | |||||||||||||| ||||||||| |||||| |||||||||||||||||  |||||||||| ||||          
T  23726037 tatgaataattt-aaaatgtaaccgtttaatattaataaaatggattataattcattcattgtgcaacttgcatgaaatgaagtaaatgaagtg--tttt 23726133  T
Q  101 ngcaattcatggaaaatgaaagatagatagt-aagaa------------aatcaagaacaaaagagagccacgtgacataagtatgagagattagttaca 187  Q
     ||||   ||| ||||||||||||||||||| |||||            ||||||||||||||||||||||  | |||||||||||||||||||||||||    
T  23726134 tgcaacagatgaaaaatgaaagatagatagtaaagaatgaccagtaaagaatcaagaacaaaagagagccatataacataagtatgagagattagttaca 23726233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 22912540 - 22912632
Alignment:
Q  1 tatgaataattttaaaatgtaactgctcaatattaataaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtg 94  Q
    |||||||||||||||||||||||| |||| |||||||||||| | |||||||||||||| | || ||| |||| |||  |||||||||||||||    
T  22912540 tatgaataattttaaaatgtaactcctca-tattaataaaatggtttataatgcattcattttgtaacatgcaagaagtgaagtaaatggagtg 22912632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 22912687 - 22912740
Alignment:
Q  137 aatcaagaacaaaagagagccacgtgacataagtatgagagattagttacaaag 190  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  22912687 aatcaagaacaaaagagagccacatggcataagtatgagagattagttagaaag 22912740  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 23727848 - 23727894
Alignment:
Q  147 aaaagagagccacgtgacataagtatgagagattagttacaaaggag 193  Q
    ||||||||||||| || ||||||||||||||||| |||| |||||||    
T  23727848 aaaagagagccacttggcataagtatgagagattggttaaaaaggag 23727894  T

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Target: scaffold0182 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 10164 - 10220
Alignment:
Q  38 aaaatagattataatgcattcactgtgcaacttgcatgaatggaagtaaatggagtg 94  Q
    |||||| ||||||||||||||| ||  |||||||||||||  |||||||||| ||||    
T  10164 aaaatatattataatgcattcattgcacaacttgcatgaagtgaagtaaatgcagtg 10220  T

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