View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16159_high_1 (Length: 996)

Name: NF16159_high_1
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16159_high_1
NF16159_high_1
[»] chr7 (21 HSPs)
chr7 (16-678)||(21612378-21613036)
chr7 (724-989)||(21613032-21613295)
chr7 (812-985)||(48219530-48219703)
chr7 (874-985)||(20377810-20377921)
chr7 (812-985)||(26500961-26501133)
chr7 (812-985)||(26591580-26591752)
chr7 (671-806)||(39476482-39476618)
chr7 (685-806)||(41219372-41219493)
chr7 (693-791)||(37524169-37524267)
chr7 (685-805)||(8260848-8260969)
chr7 (685-790)||(27874038-27874143)
chr7 (716-806)||(21153754-21153844)
chr7 (865-961)||(2913148-2913244)
chr7 (685-809)||(18239401-18239525)
chr7 (865-972)||(8725791-8725898)
chr7 (700-763)||(34354429-34354492)
chr7 (685-767)||(29714268-29714349)
chr7 (679-732)||(3742437-3742490)
chr7 (699-791)||(37449985-37450078)
chr7 (910-961)||(18239269-18239320)
chr7 (682-741)||(39283955-39284014)
[»] chr3 (22 HSPs)
chr3 (685-985)||(6755533-6755833)
chr3 (601-959)||(14995068-14995430)
chr3 (685-989)||(6462964-6463269)
chr3 (874-985)||(53825747-53825858)
chr3 (662-899)||(7956166-7956403)
chr3 (874-979)||(42948915-42949020)
chr3 (874-954)||(2324057-2324137)
chr3 (685-806)||(39415314-39415435)
chr3 (789-946)||(42384420-42384576)
chr3 (891-961)||(7955515-7955585)
chr3 (658-806)||(25574767-25574916)
chr3 (685-806)||(48086811-48086932)
chr3 (865-989)||(25886181-25886306)
chr3 (856-960)||(25744971-25745076)
chr3 (696-741)||(37282182-37282227)
chr3 (658-741)||(23029588-23029672)
chr3 (875-961)||(48087001-48087087)
chr3 (669-741)||(49742161-49742234)
chr3 (873-961)||(39415502-39415590)
chr3 (685-736)||(2182556-2182607)
chr3 (910-961)||(25575020-25575071)
chr3 (724-765)||(50561451-50561492)
[»] chr4 (32 HSPs)
chr4 (605-972)||(24607985-24608354)
chr4 (716-956)||(40962538-40962781)
chr4 (812-985)||(46815193-46815367)
chr4 (812-980)||(33163083-33163251)
chr4 (685-805)||(49065549-49065669)
chr4 (874-979)||(53267272-53267377)
chr4 (658-806)||(21713162-21713311)
chr4 (859-961)||(13867647-13867749)
chr4 (812-944)||(28797930-28798063)
chr4 (913-985)||(36173103-36173175)
chr4 (685-807)||(27761126-27761248)
chr4 (728-817)||(42039026-42039115)
chr4 (865-985)||(49261600-49261720)
chr4 (865-989)||(372822-372947)
chr4 (686-805)||(9242917-9243036)
chr4 (865-961)||(40221095-40221191)
chr4 (859-961)||(13855925-13856027)
chr4 (688-806)||(38131410-38131528)
chr4 (688-809)||(31936317-31936437)
chr4 (682-766)||(2777940-2778024)
chr4 (724-806)||(372703-372785)
chr4 (687-762)||(14289680-14289755)
chr4 (865-959)||(18414019-18414113)
chr4 (724-806)||(32935692-32935774)
chr4 (940-989)||(17212570-17212619)
chr4 (724-806)||(16525077-16525160)
chr4 (717-767)||(49261821-49261871)
chr4 (687-736)||(31823010-31823059)
chr4 (747-806)||(31823039-31823098)
chr4 (875-961)||(31936165-31936251)
chr4 (717-806)||(13856059-13856148)
chr4 (912-957)||(14990155-14990200)
[»] chr1 (27 HSPs)
chr1 (606-959)||(47983569-47983915)
chr1 (688-957)||(18843823-18844093)
chr1 (702-985)||(5766640-5766924)
chr1 (812-985)||(45690425-45690599)
chr1 (859-989)||(27034189-27034320)
chr1 (874-981)||(50066978-50067084)
chr1 (865-989)||(5767416-5767540)
chr1 (683-805)||(3660175-3660297)
chr1 (883-980)||(47486783-47486880)
chr1 (669-806)||(39222654-39222792)
chr1 (658-794)||(46923718-46923855)
chr1 (685-806)||(48566726-48566847)
chr1 (865-977)||(23602780-23602892)
chr1 (688-806)||(41871704-41871822)
chr1 (685-766)||(5770599-5770680)
chr1 (682-794)||(21482871-21482983)
chr1 (907-968)||(6086477-6086538)
chr1 (682-760)||(10308439-10308517)
chr1 (717-794)||(49597193-49597270)
chr1 (747-806)||(46178671-46178730)
chr1 (682-760)||(33686586-33686665)
chr1 (910-960)||(3782094-3782144)
chr1 (682-804)||(1671324-1671447)
chr1 (719-806)||(9343499-9343586)
chr1 (685-767)||(23602993-23603076)
chr1 (910-961)||(49597385-49597436)
chr1 (910-956)||(41871926-41871972)
[»] chr2 (13 HSPs)
chr2 (812-961)||(16710088-16710236)
chr2 (812-985)||(22494635-22494808)
chr2 (685-806)||(29908471-29908592)
chr2 (671-794)||(12874196-12874320)
chr2 (659-806)||(29132632-29132780)
chr2 (627-763)||(16710243-16710381)
chr2 (685-794)||(6903725-6903833)
chr2 (669-794)||(8556189-8556315)
chr2 (715-784)||(28266005-28266074)
chr2 (910-956)||(20149444-20149490)
chr2 (747-829)||(20149569-20149651)
chr2 (910-961)||(25685895-25685946)
chr2 (683-741)||(32737934-32737992)
[»] chr8 (9 HSPs)
chr8 (841-985)||(43636462-43636606)
chr8 (865-977)||(1931498-1931610)
chr8 (682-806)||(43693562-43693686)
chr8 (896-973)||(33775408-33775485)
chr8 (685-806)||(34471590-34471710)
chr8 (685-794)||(23542752-23542861)
chr8 (865-985)||(43835142-43835262)
chr8 (910-961)||(3964187-3964238)
chr8 (716-806)||(3964009-3964098)
[»] scaffold1700 (1 HSPs)
scaffold1700 (859-989)||(940-1071)
[»] chr6 (8 HSPs)
chr6 (812-968)||(35054679-35054835)
chr6 (687-828)||(23912225-23912366)
chr6 (859-934)||(9400164-9400239)
chr6 (692-806)||(319200-319314)
chr6 (685-794)||(13312555-13312664)
chr6 (724-766)||(17399041-17399083)
chr6 (706-767)||(9521402-9521463)
chr6 (910-961)||(23912082-23912133)
[»] chr5 (21 HSPs)
chr5 (789-985)||(3460108-3460304)
chr5 (876-985)||(4845478-4845587)
chr5 (669-806)||(6427235-6427373)
chr5 (874-984)||(40014161-40014270)
chr5 (670-791)||(7083984-7084106)
chr5 (718-945)||(2599801-2600028)
chr5 (682-806)||(1172933-1173057)
chr5 (859-989)||(9883720-9883851)
chr5 (914-985)||(19401717-19401788)
chr5 (686-806)||(41758709-41758829)
chr5 (713-806)||(10532789-10532882)
chr5 (685-806)||(28784767-28784888)
chr5 (910-968)||(10399112-10399170)
chr5 (865-961)||(19044036-19044132)
chr5 (686-765)||(11125823-11125901)
chr5 (686-766)||(16100850-16100930)
chr5 (682-791)||(1081899-1082009)
chr5 (685-806)||(20202606-20202726)
chr5 (682-741)||(12144012-12144071)
chr5 (910-961)||(41758554-41758605)
chr5 (158-215)||(4995744-4995801)
[»] scaffold0753 (1 HSPs)
scaffold0753 (705-805)||(3987-4088)
[»] scaffold0861 (1 HSPs)
scaffold0861 (671-806)||(3722-3858)
[»] scaffold0223 (2 HSPs)
scaffold0223 (877-961)||(15922-16006)
scaffold0223 (718-806)||(16079-16168)
[»] scaffold0217 (1 HSPs)
scaffold0217 (702-805)||(25584-25688)
[»] scaffold0051 (1 HSPs)
scaffold0051 (685-760)||(20062-20138)


Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 16 - 678
Target Start/End: Original strand, 21612378 - 21613036
Alignment:
Q  16 aacacaacatgctactatgatatgttgatcatatgnnnnnnnnn-acggactggctaagttgttgattagctattatatttataaatctaacagttaacg 114  Q
    |||||||||||||||||||||||||||||||||||          |||||| ||||||||||||||||||||||||||||||||||||||||       |    
T  21612378 aacacaacatgctactatgatatgttgatcatatgttttttttttacggaccggctaagttgttgattagctattatatttataaatctaac-------g 21612470  T
Q  115 ttaaattgtacttcccccgtttatacgataagaaacaataaaaattttaaatttattaaataactgatatacatagtttatattataaactaaatacatc 214  Q
    ||||||||||||||||| |||| |||||||||||||||||||  |||||| || |||||||||||||| |||||||| ||| || |||||||||||||||    
T  21612471 ttaaattgtacttcccc-gtttttacgataagaaacaataaattttttaagttcattaaataactgatgtacatagtctatgttttaaactaaatacatc 21612569  T
Q  215 aatcattgaatattaaaaagtgaattgtctcttatgataaagaccgactaagttttttcaaaaatttccatttggannnnnnnnnnnatttgggatgttt 314  Q
    | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |           |||||||||||||    
T  21612570 agtcattgaatatcaaaaagtgaattgtctcttatgataaagaccgactaagttttttcaaaaattcccatttgaatttttttt---atttgggatgttt 21612666  T
Q  315 tttacccaagagaatatcaaaaatcatttcgaaattgatatatttatcatttctcattttcactcgataatttcttttaacaagcaaaatgatttattga 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21612667 tttacccaagagaatatcaaaaatcatttcgaaattgatatatttatcatttctcattttcactcgataatttcttttaacaagcaaaatgaattattga 21612766  T
Q  415 aatagaaggagtactctaacccatatataacaagaagagtacacatgaagtgaaaggcaaacaacatattacaatttaaaccgaaaaaacagtagcctac 514  Q
    |||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  21612767 aatacatggattactctaacccatatataacaagaagagtacacatgaagtgaaaggcaaacaacatattacaattcaaatcgaaaaaacagtagcctac 21612866  T
Q  515 ttctatccctccctcaatacaaactgaaccctcttttcctgnnnnnnntgcatcacgcagcacga-----acgcataaagatcatatgagattttagatt 609  Q
    ||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||     || ||||||| |||||||||||||||||||    
T  21612867 ttctatccctccctcaatacaaactgaaccctcttttccttaaaaaaatgcatcacgcagcacgaatgttacacataaagctcatatgagattttagatt 21612966  T
Q  610 tcttctcttctccctatacttttctctcgcacccagctgaaaa-acattaatgcccctgtgctagttaag 678  Q
    ||| |||||| |||| ||||||||||||||| |||| |||||| |||||||||||| |||||||||||||    
T  21612967 tctgctcttcgccctgtacttttctctcgcatccagttgaaaagacattaatgcccttgtgctagttaag 21613036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 724 - 989
Target Start/End: Original strand, 21613032 - 21613295
Alignment:
Q  724 ttaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttgaaccgtgttcaaagcat 823  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||    
T  21613032 ttaagtcacgcaccattggcatgtgcgcgagttaactcacgcagcttgaccggtggtcagaactgaagaactcacgtttttgga-ccgtgttcaaagcat 21613130  T
Q  824 tttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacc 923  Q
    |||||||||||||| | |||||||||||   ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21613131 tttaattggttttgcacgtttttgttaagttatttcacgtttttttactatatttatggtagatataacctatgttacaatctccccctataaatacacc 21613230  T
Q  924 tctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctc-ccccctatg 989  Q
    ||||||||||||| ||||  |||||||||||||||||| |||||||||||||||||| |||||||||    
T  21613231 tctaaacttccccttttc--cacaccatctcacattctcactctcttcctcactctctccccctatg 21613295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 812 - 985
Target Start/End: Original strand, 48219530 - 48219703
Alignment:
Q  812 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 911  Q
    ||||||| |||||||||||| ||||  | |||||||||||    || ||||| |||| ||  |||||||||||||||||||||||||||||||||||| |    
T  48219530 tgttcaatgcattttaattgtttttacacgtttttgttaagtttttacacgttttttgaccctatttatggtagatataacctatgttacaatctcccac 48219629  T
Q  912 tataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 985  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||| |||| ||||    
T  48219630 tataaatacacctctaaacttccccatttcctcacaccatctcgcattctcactctcctcctcagtctctcccc 48219703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 874 - 985
Target Start/End: Original strand, 20377810 - 20377921
Alignment:
Q  874 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcct 973  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||| ||||    
T  20377810 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaactttcccatttcttcacaccatctcacattctcactctcctcct 20377909  T
Q  974 cactctcccccc 985  Q
    ||||||| ||||    
T  20377910 cactctctcccc 20377921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 812 - 985
Target Start/End: Complemental strand, 26501133 - 26500961
Alignment:
Q  812 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 911  Q
    ||||||| |||||||||||| |||   | |||||||||||    || ||||| |||| ||  ||||||||||||||||||||||||||||||||||||||    
T  26501133 tgttcaatgcattttaattgttttaacacgtttttgttaactttttacacgttttttgaccctatttatggtagatataacctatgttacaatctccccc 26501034  T
Q  912 tataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 985  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| ||||||||||| ||||    
T  26501033 tataaatacacctctaaacttcccaatttcctcaca-catctcacattctcactctcctcctcactctctcccc 26500961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 812 - 985
Target Start/End: Original strand, 26591580 - 26591752
Alignment:
Q  812 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 911  Q
    ||||||| |||||||||||| |||   | |||||||||||    || ||||| |||| ||  ||||||||||||||||||||||||||||||||||||||    
T  26591580 tgttcaatgcattttaattgttttaacacgtttttgttaactttttacacgttttttgaccctatttatggtagatataacctatgttacaatctccccc 26591679  T
Q  912 tataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 985  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| ||||||||||| ||||    
T  26591680 tataaatacacctctaaacttcccaatttcctcaca-catctcacattctcactctcctcctcactctctcccc 26591752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 671 - 806
Target Start/End: Original strand, 39476482 - 39476618
Alignment:
Q  671 tagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagct 769  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | || | |||||||||||||||||||| |     
T  39476482 tagttaagtcatgcagcgtgacttaactagcgcaccttataatctatgcgtgacttaagtcacgcaccattagcctatgcgcgagttaactcacgcacca 39476581  T
Q  770 tgactggtggtcagaactgaagaactcacgttttttg 806  Q
    || | |||||||||| |||||||||  ||||||||||    
T  39476582 tggccggtggtcagagctgaagaacaaacgttttttg 39476618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 685 - 806
Target Start/End: Complemental strand, 41219493 - 41219372
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    |||||| |||||| ||||| ||||||| || ||||||| |||||||||||| ||||||| | ||||||||||||||||||||  ||| ||||||||||||    
T  41219493 gcgtgatttaacttgcgcatcttataacctctgcgtgacttaagtcacgcatcactggcctatgcgcgagttaactcacgcacgttggctggtggtcaga 41219394  T
Q  785 actgaagaactcacgttttttg 806  Q
    ||||||||||  ||||||||||    
T  41219393 actgaagaacaaacgttttttg 41219372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 693 - 791
Target Start/End: Complemental strand, 37524267 - 37524169
Alignment:
Q  693 taactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaag 791  Q
    |||||| |||||||||||| || ||||||| |||||||||||||||||||| ||||||||||||| ||||||||  ||| |||||||||||||||||||    
T  37524267 taactaacgcaccttataagctctgcgtgacttaagtcacgcaccactggcctgtgcgcgagttacctcacgcacgttggctggtggtcagaactgaag 37524169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 685 - 805
Target Start/End: Original strand, 8260848 - 8260969
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaactcacgcagcttgactggtggtcag 783  Q
    |||||||||||||   |||||||||||||| ||||||| |||||||||||||||||| || | ||||||||||||||||||||  ||| | |||||||||    
T  8260848 gcgtgacttaactcatgcaccttataatctctgcgtgacttaagtcacgcaccactgagcctttgcgcgagttaactcacgcaagttggccggtggtcag 8260947  T
Q  784 aactgaagaactcacgtttttt 805  Q
    |||||| ||||  |||||||||    
T  8260948 aactgatgaacaaacgtttttt 8260969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 685 - 790
Target Start/End: Complemental strand, 27874143 - 27874038
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    ||||| ||||||| ||||||| ||||| || ||||||| ||||| |||||||||||| | | ||||||||||||||||||||  ||| | ||||||||||    
T  27874143 gcgtggcttaacttgcgcaccatataacctctgcgtgacttaagccacgcaccactgacctatgcgcgagttaactcacgcacgttggccggtggtcaga 27874044  T
Q  785 actgaa 790  Q
    ||||||    
T  27874043 actgaa 27874038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 716 - 806
Target Start/End: Original strand, 21153754 - 21153844
Alignment:
Q  716 tgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 806  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||  | | | ||||||| || |||||||||  ||||||||||    
T  21153754 tgcgtgagttaagtcacgcaccactggcatgtgcgtgagttaactcacgcacgtcggccggtggtcggagctgaagaacagacgttttttg 21153844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 865 - 961
Target Start/End: Complemental strand, 2913244 - 2913148
Alignment:
Q  865 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattct 961  Q
    ||||||||| ||||||||||| |||||||||| |||| ||   | ||||||||||  |||| |||||||| ||||| ||||||||||||||||||||    
T  2913244 tttttactacatttatggtagttataacctatattaccattctcacctataaatatccctccaaacttccacattttctcacaccatctcacattct 2913148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 685 - 809
Target Start/End: Complemental strand, 18239525 - 18239401
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    ||||||||||||| |  ||||||||||  | || |||| |||||||||||| || |||| | |||||||||||||| |||||  |||   ||||||||||    
T  18239525 gcgtgacttaacttgtacaccttataacatctgtgtgacttaagtcacgcatcaatggcctatgcgcgagttaactaacgcacgttggtcggtggtcaga 18239426  T
Q  785 actgaagaactcacgttttttgaac 809  Q
    ||||||||||  |||||||||||||    
T  18239425 actgaagaacaaacgttttttgaac 18239401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 865 - 972
Target Start/End: Original strand, 8725791 - 8725898
Alignment:
Q  865 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaac 964  Q
    |||| |||| |||||| |||| ||||||||||||||  ||  |  ||||||||||| |||| |||||| | ||||||||||||||||||| |||||| ||    
T  8725791 ttttgactacatttattgtagttataacctatgttatcattccaacctataaatacccctccaaactttctcatttcctcacaccatctctcattctcac 8725890  T
Q  965 tctcttcc 972  Q
    ||||||||    
T  8725891 tctcttcc 8725898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 700 - 763
Target Start/End: Complemental strand, 34354492 - 34354429
Alignment:
Q  700 cgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcac 763  Q
    |||||||||||  || ||||||| |||||||||| ||||||||| | |||||||||||||||||    
T  34354492 cgcaccttatatgctctgcgtgacttaagtcacgtaccactggcctatgcgcgagttaactcac 34354429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 685 - 767
Target Start/End: Original strand, 29714268 - 29714349
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcag 767  Q
    ||||||||||| |  |||||||||||  || ||||||| |||||||| ||||||||| | || ||||||||||||||||||||    
T  29714268 gcgtgacttaaatcacgcaccttatag-ctctgcgtgacttaagtcatgcaccactgacttgggcgcgagttaactcacgcag 29714349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 679 - 732
Target Start/End: Complemental strand, 3742490 - 3742437
Alignment:
Q  679 catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcac 732  Q
    |||||||||||| ||||||||||||| ||||||||| || |||| |||||||||    
T  3742490 catgcagcgtgatttaactagcgcactttataatctctgtgtgacttaagtcac 3742437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 699 - 791
Target Start/End: Original strand, 37449985 - 37450078
Alignment:
Q  699 gcgcaccttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaag 791  Q
    |||||||||||||||||||||||| ||||||| |||| ||||| || | ||| ||||||||||  ||||  ||||| |||||| | ||||||||    
T  37449985 gcgcaccttataatctttgcgtgacttaagtcgcgcatcactgagcctatgcacgagttaacttgcgcaagttgaccggtggtaaaaactgaag 37450078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 910 - 961
Target Start/End: Complemental strand, 18239320 - 18239269
Alignment:
Q  910 cctataaatacacctctaaacttccccatttcctcacaccatctcacattct 961  Q
    ||||||||||| |||| | ||||||| |||||||||||||||||||| ||||    
T  18239320 cctataaatacccctccatacttccctatttcctcacaccatctcactttct 18239269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 741
Target Start/End: Original strand, 39283955 - 39284014
Alignment:
Q  682 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg 741  Q
    |||||||| |||||||  ||||||| |||| || ||||||| ||||||||||||||||||    
T  39283955 gcagcgtggcttaactcacgcacctcataagctctgcgtgacttaagtcacgcaccactg 39284014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 4e-90; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 685 - 985
Target Start/End: Complemental strand, 6755833 - 6755533
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    |||||||||||||  |||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||||||||||||  ||| | |||||| |||    
T  6755833 gcgtgacttaactcacgcaccttataagctttgtgtgacttaagtcacacaccactggcatgtgcgcgagttaactcacgcaagttggccggtggttaga 6755734  T
Q  785 actgaagaactcacgttttttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggta 884  Q
     || |||||| ||||||||||| ||  ||||||| |||||||||||| ||||| | ||||||||| |    |||||||| |||| |||||||||||||||    
T  6755733 gctcaagaacacacgttttttggactttgttcaatgcattttaattgattttgcacgtttttgtttagttttttcacgttttttgactatatttatggta 6755634  T
Q  885 gatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctccccc 984  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  6755633 gatataacctatgttacaatctccccctataaatacatctctaaactttcccatttcctcacaccatctcatattctcactctcatcctcactctccccc 6755534  T
Q  985 c 985  Q
    |    
T  6755533 c 6755533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 9e-82
Query Start/End: Original strand, 601 - 959
Target Start/End: Original strand, 14995068 - 14995430
Alignment:
Q  601 ttttagatttcttctcttctccctatacttttctctcgcacccagctgaaaa-acattaatgcccctgtgctagttaag-catgcagcgtgacttaacta 698  Q
    |||||||||| | |||||| ||||  |||||||  ||||||||||||||||| |||||||| |||||  |||||||||| || |||||||||||||||||    
T  14995068 ttttagatttttgctcttcgccctgcacttttcattcgcacccagctgaaaagacattaatacccctacgctagttaagtcacgcagcgtgacttaacta 14995167  T
Q  699 gcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgt-gcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactca 797  Q
     | |||||||||||||||| |||| ||||||||| |||||||| ||| | |||||||||||||||||||  ||| |  || | |||||||||||||| ||    
T  14995168 acacaccttataatctttgtgtgagttaagtcacacaccactgacattttgcgcgagttaactcacgcacattggccagtagccagaactgaagaacaca 14995267  T
Q  798 cgttttttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgttttt-actatatttatggtagatataacctat 896  Q
     |||||||| || |||||||| |||||||||||||||||| | ||||||||||     |||||||| ||||| ||||||||||||||||||| |||||||    
T  14995268 tgttttttggacggtgttcaatgcattttaattggttttgcacgtttttgttatgttttttcacgtttttttgactatatttatggtagatacaacctat 14995367  T
Q  897 gttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacatt 959  Q
    |||||||||||| ||||||||||||||| |||| || ||||||| ||||||||||||||||||    
T  14995368 gttacaatctcctcctataaatacacctataaaatttcccattttctcacaccatctcacatt 14995430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 685 - 989
Target Start/End: Original strand, 6462964 - 6463269
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    |||||||||||||  |||||||||||| ||||| |||| ||||||||||||||||||||||||| | |||||||||||||||  ||| | |||||| | |    
T  6462964 gcgtgacttaactcacgcaccttataagctttgtgtgacttaagtcacgcaccactggcatgtgtgtgagttaactcacgcaagttggccggtggttaaa 6463063  T
Q  785 actgaagaactcacgttttttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgttttt-actatatttatggt 883  Q
     || ||||||  | |||||||| ||  ||||||| |||||||||||||||||| | |||||||||||    |||||||| ||||| ||||||||||||||    
T  6463064 gctcaagaacaaatgttttttggactttgttcaatgcattttaattggttttgcacgtttttgttaagttttttcacgtttttttgactatatttatggt 6463163  T
Q  884 agatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccc 983  Q
    ||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| || ||    
T  6463164 agatataacctattttacaatctccccttaaaaatacacctctaaacttccccatttcctcacaccatctcacattctcactctcatcctcactgtctcc 6463263  T
Q  984 cctatg 989  Q
    ||||||    
T  6463264 cctatg 6463269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 874 - 985
Target Start/End: Original strand, 53825747 - 53825858
Alignment:
Q  874 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcct 973  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  53825747 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctcactctcctcct 53825846  T
Q  974 cactctcccccc 985  Q
    ||||||||||||    
T  53825847 cactctcccccc 53825858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 662 - 899
Target Start/End: Complemental strand, 7956403 - 7956166
Alignment:
Q  662 cccctgtgctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaact 760  Q
    |||||| |||||||||| || ||||| |||||||||||||||||||||||   | ||||||| ||||| ||| |||||||| ||||||||||||||||||    
T  7956403 cccctgcgctagttaagtcacgcagcatgacttaactagcgcaccttatatggtgtgcgtgagttaagacacacaccactgacatgtgcgcgagttaact 7956304  T
Q  761 cacgcagcttgactggtggtcagaactgaagaactcacgttttttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttca 860  Q
    || |||| |||   || ||||| || |||||||| ||||||||||| || |||||||| |||||||||||||||||| | |||||||||||    |||||    
T  7956303 catgcaggttgttcgggggtcaaaattgaagaacacacgttttttggacggtgttcaatgcattttaattggttttgcacgtttttgttaagtt-tttca 7956205  T
Q  861 cgtgtttttactatatttatggtagatataacctatgtt 899  Q
    ||| |||||||||||||||| ||||||||||||||||||    
T  7956204 cgtttttttactatatttatagtagatataacctatgtt 7956166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 874 - 979
Target Start/End: Original strand, 42948915 - 42949020
Alignment:
Q  874 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcct 973  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| ||||    
T  42948915 tatttatggtagatataacctatgctacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcatattctcaccctcctcct 42949014  T
Q  974 cactct 979  Q
    ||||||    
T  42949015 cactct 42949020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 874 - 954
Target Start/End: Complemental strand, 2324137 - 2324057
Alignment:
Q  874 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctc 954  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  2324137 tatttatggtagatataacctatgttataatctccccctatatatacacctctaaactttcccatttcctcacaccatctc 2324057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 685 - 806
Target Start/End: Original strand, 39415314 - 39415435
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    ||||||||||||| ||||||||||||| || ||||||| |||||||||||||||||||| |||||| |||||||||||||||  ||| | | |||| |||    
T  39415314 gcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctgtgcgtgagttaactcacgcacgttggccgatggttaga 39415413  T
Q  785 actgaagaactcacgttttttg 806  Q
    ||||||||||  ||||||||||    
T  39415414 actgaagaacaaacgttttttg 39415435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 789 - 946
Target Start/End: Complemental strand, 42384576 - 42384420
Alignment:
Q  789 aagaactcacgttttttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagata 888  Q
    |||||| |||||||||||| |  ||||||| |||||||||||  ||||  |||||| |||||| |  |  ||| | |||| ||  ||||||||||| |||    
T  42384576 aagaacacacgttttttga-ctttgttcaatgcattttaattatttttacatgtttctgttaagatttaacacattttttgaccctatttatggtacata 42384478  T
Q  889 taacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcac 946  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42384477 taacctatgttacaatctccccctataaatacacctctaaactttcccatttcctcac 42384420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 891 - 961
Target Start/End: Complemental strand, 7955585 - 7955515
Alignment:
Q  891 acctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattct 961  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7955585 acctatgttacaatctccccttataaatacacctctaaacttctccatttcctcacaccatctcacattct 7955515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 658 - 806
Target Start/End: Original strand, 25574767 - 25574916
Alignment:
Q  658 aatgcccctgtgctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagtt 756  Q
    ||||||| || || ||||||| ||||| ||||||||||||| | ||||||| ||| || || |||| |||||||||||||||||||| | ||||||||||    
T  25574767 aatgcccttgcgcaagttaagtcatgccgcgtgacttaacttgtgcaccttgtaacctctgtgtgacttaagtcacgcaccactggcctatgcgcgagtt 25574866  T
Q  757 aactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 806  Q
    ||||||||||  |||   ||||||||||||||||||||  ||||||||||    
T  25574867 aactcacgcacgttggtcggtggtcagaactgaagaacaaacgttttttg 25574916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 685 - 806
Target Start/End: Original strand, 48086811 - 48086932
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    ||||||||||||| ||||||||||||| || ||| ||| |||||||||||||||||||| | ||||||||||||||||||||  ||| | ||||||||||    
T  48086811 gcgtgacttaacttgcgcaccttataacctctgcatgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggccggtggtcaga 48086910  T
Q  785 actgaagaactcacgttttttg 806  Q
    |||||  |||  ||||||||||    
T  48086911 actgactaacaaacgttttttg 48086932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 865 - 989
Target Start/End: Original strand, 25886181 - 25886306
Alignment:
Q  865 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaac 964  Q
    |||| |||| ||||||||||| |||||||||| |||  ||  || ||||||||||  |||| ||||||| ||||||||||||||||||||||| ||| ||    
T  25886181 ttttgactacatttatggtagttataacctatcttatcattcccacctataaatatccctccaaacttctccatttcctcacaccatctcacactctcac 25886280  T
Q  965 tctcttcctcactctc-ccccctatg 989  Q
    |||| |||||| |||| |||||||||    
T  25886281 tctcctcctcattctctccccctatg 25886306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 856 - 960
Target Start/End: Complemental strand, 25745076 - 25744971
Alignment:
Q  856 tttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaactt-ccccatttcctcacaccatctc 954  Q
    |||||||| |||| |||||||||||||||| |||||||||| |||  ||  || | ||||||||| ||||  ||||| |||||||| || ||||||||||    
T  25745076 tttcacgttttttgactatatttatggtagttataacctattttattattcccacttataaatacccctcctaacttcccccattttcttacaccatctc 25744977  T
Q  955 acattc 960  Q
    ||||||    
T  25744976 acattc 25744971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 696 - 741
Target Start/End: Complemental strand, 37282227 - 37282182
Alignment:
Q  696 ctagcgcaccttataatctttgcgtgaattaagtcacgcaccactg 741  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||    
T  37282227 ctagcgcaccttataagctttgcgtgacttaagtcacgcaccactg 37282182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 658 - 741
Target Start/End: Original strand, 23029588 - 23029672
Alignment:
Q  658 aatgcccctgtgctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg 741  Q
    ||||||| || |||||||||| || ||||||||||||||||  |||| || |||| |||||||||| |||||||| |||||||||    
T  23029588 aatgcccttgcgctagttaagtcacgcagcgtgacttaactcacgcatctcataagctttgcgtgacttaagtcatgcaccactg 23029672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 875 - 961
Target Start/End: Original strand, 48087001 - 48087087
Alignment:
Q  875 atttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattct 961  Q
    ||||||||| |||||||||||   ||| ||  || ||||||||||| |||| | ||||||| |||||||||||||||||||| ||||    
T  48087001 atttatggtggatataacctacactaccattcccacctataaatacccctccatacttccctatttcctcacaccatctcactttct 48087087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 669 - 741
Target Start/End: Complemental strand, 49742234 - 49742161
Alignment:
Q  669 gctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg 741  Q
    |||||||||| || ||||||||||||||||  ||||||| | || || ||||||| ||||||||||||||||||    
T  49742234 gctagttaagtcacgcagcgtgacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactg 49742161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 961
Target Start/End: Original strand, 39415502 - 39415590
Alignment:
Q  873 atatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattct 961  Q
    ||||||||||| | |||||||||   ||| ||  || ||||||||||| |||| | ||||||| |||||||||||||||||||| ||||    
T  39415502 atatttatggtggttataacctacactaccattcccacctataaatacccctccatacttccctatttcctcacaccatctcactttct 39415590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 736
Target Start/End: Complemental strand, 2182607 - 2182556
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcac 736  Q
    ||||||||||||| ||||||||||||| || ||| ||| |||||||||||||    
T  2182607 gcgtgacttaacttgcgcaccttataacctctgcttgatttaagtcacgcac 2182556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 910 - 961
Target Start/End: Original strand, 25575020 - 25575071
Alignment:
Q  910 cctataaatacacctctaaacttccccatttcctcacaccatctcacattct 961  Q
    ||||||||||| |||| | ||||||| |||||||||||||||||||| ||||    
T  25575020 cctataaatactcctccatacttccctatttcctcacaccatctcactttct 25575071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 724 - 765
Target Start/End: Original strand, 50561451 - 50561492
Alignment:
Q  724 ttaagtcacgcaccactggcatgtgcgcgagttaactcacgc 765  Q
    |||||||| |||||||| || |||||||||||||||||||||    
T  50561451 ttaagtcatgcaccacttgcctgtgcgcgagttaactcacgc 50561492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 166; Significance: 2e-88; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 605 - 972
Target Start/End: Complemental strand, 24608354 - 24607985
Alignment:
Q  605 agatttcttctcttctccctatacttttctctcgcacccagctgaaaa-acattaatgcccctgtgctagttaagc-atgcagcgtgacttaactagcgc 702  Q
    |||||||| |||||| ||||  |||| || || ||||||||||||||| ||| |||||||||||   ||||||||  | |||||| ||||||||||||||    
T  24608354 agatttctcctcttcaccctgcacttatcgctggcacccagctgaaaagacaataatgcccctgcattagttaagttacgcagcgagacttaactagcgc 24608255  T
Q  703 accttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttt 802  Q
    ||||||||||||||| |||| |||||||||||| |||||| |||||||||||||||||||||||  ||| | |||||| ||| || || ||| |||| ||    
T  24608254 accttataatctttgtgtgagttaagtcacgcatcactggtatgtgcgcgagttaactcacgcaagttggccggtggttagagctcaaaaacacacgctt 24608155  T
Q  803 tttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttaca 902  Q
    |||| ||  || |||| |||||||||||||||||| | |||||||||||    |||||||| |||| |||||||||||||||||||||||||||||||||    
T  24608154 tttggactttggtcaatgcattttaattggttttgcacgtttttgttaagttttttcacgttttttgactatatttatggtagatataacctatgttaca 24608055  T
Q  903 atctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcc 972  Q
    ||||||| |||||||||| |||||||| || |||||||||||||||||||||||||||  ||||||||||    
T  24608054 atctccctctataaatacccctctaaattttcccatttcctcacaccatctcacattcccactctcttcc 24607985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 716 - 956
Target Start/End: Complemental strand, 40962781 - 40962538
Alignment:
Q  716 tgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggt-ggtcagaactgaagaactcacgttttttgaaccgtgt 814  Q
    ||||||| ||||||||| |||||||||||| ||| ||||||||||||||||| ||| | ||| ||||||| || |||||  ||||||||||| ||  ||     
T  40962781 tgcgtgagttaagtcacacaccactggcatttgcacgagttaactcacgcaggttggccggttggtcagagctcaagaatacacgttttttggactttgg 40962682  T
Q  815 tcaaagcattttaattggttttgtatgtttttgttaaaaaattt--cacgtgtttttactatatttatggtagatataacctatgttacaatctccccct 912  Q
    ||||   |||||||||||||||| | |||||| |||     |||  ||| | |||| ||||||||||||||||||||||||||||||||||||||| | |    
T  40962681 tcaagtgattttaattggttttgcacgttttttttactttgttttacacattttttgactatatttatggtagatataacctatgttacaatctcctcat 40962582  T
Q  913 ataaatacacctctaaacttccccatttcctcacaccatctcac 956  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  40962581 ataaatacacctccaaacttccccatttcctcacaccatctcac 40962538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 812 - 985
Target Start/End: Original strand, 46815193 - 46815367
Alignment:
Q  812 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 911  Q
    ||||||| |||||||||||| ||||  | ||||||||||| |  |  ||||| |||| ||  ||||||||||||||||||||||||||||||||||||||    
T  46815193 tgttcaatgcattttaattgtttttacacgtttttgttaagatttaacacgttttttgaccctatttatggtagatataacctatgttacaatctccccc 46815292  T
Q  912 tataaatacacctct-aaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 985  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||||||||||| ||||    
T  46815293 tataaatacacctctaaaacttccccatttcctcacaccaactcacattctcactctcctcctcactctctcccc 46815367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 812 - 980
Target Start/End: Original strand, 33163083 - 33163251
Alignment:
Q  812 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 911  Q
    ||||||| |||||||||||| ||||  | ||||||||||| |  |  ||||| |||| ||  || |||||||||||||||||||||||||||||||||||    
T  33163083 tgttcaatgcattttaattgtttttacacgtttttgttaagatttaacacgttttttgaccctacttatggtagatataacctatgttacaatctccccc 33163182  T
Q  912 tataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctc 980  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||||||    
T  33163183 tataaatacacctctaaacttccccatttcctcacaccaactcacattttcactctcctcctcactctc 33163251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 685 - 805
Target Start/End: Complemental strand, 49065669 - 49065549
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    ||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||| | |||||||||||||||||||| |||| | ||||||||||    
T  49065669 gcgtgacttaactagcgcaccttataaactatgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcaccttggccggtggtcaga 49065570  T
Q  785 actgaagaactcacgtttttt 805  Q
     |||||||||  |||||||||    
T  49065569 gctgaagaacaaacgtttttt 49065549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 874 - 979
Target Start/End: Original strand, 53267272 - 53267377
Alignment:
Q  874 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcct 973  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| || ||| ||||||||| |||||| ||||    
T  53267272 tatttgtggtagatataacctatgttacaatctccccctataaatacacctctaaacttcttcatttcctcgcagcatttcacattctcactctcctcct 53267371  T
Q  974 cactct 979  Q
    ||||||    
T  53267372 cactct 53267377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 658 - 806
Target Start/End: Complemental strand, 21713311 - 21713162
Alignment:
Q  658 aatgcccctgtgctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagtt 756  Q
    ||||||| || |||||||||| || ||||||||| ||||||||||||||||||||||| ||||||  ||||||||||||||| |||| | ||| ||||||    
T  21713311 aatgcccttgcgctagttaagtcacgcagcgtgatttaactagcgcaccttataatctatgcgtggcttaagtcacgcaccaatggcctatgcacgagtt 21713212  T
Q  757 aactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 806  Q
    |||||||||| | || | |||||||||| |||||||||  ||||||||||    
T  21713211 aactcacgcaacatggccggtggtcagagctgaagaacaaacgttttttg 21713162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 859 - 961
Target Start/End: Complemental strand, 13867749 - 13867647
Alignment:
Q  859 cacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacat 958  Q
    ||||| |||| ||||||||||| |||| ||||||||||||||| ||  || ||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  13867749 cacgttttttgactatatttattgtagttataacctatgttaccattcccacctataaatactcctccaaacttccccatttcctcacaccatctcacat 13867650  T
Q  959 tct 961  Q
    |||    
T  13867649 tct 13867647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 812 - 944
Target Start/End: Original strand, 28797930 - 28798063
Alignment:
Q  812 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaattt-cacgtgtttttactatatttatggtagatataacctatgttacaatctcccc 910  Q
    ||||||| |||||||||||| ||||  | |||||||||||| | ||  ||| | |||| ||  ||||||||||||||| |||||||||||||||||||||    
T  28797930 tgttcaatgcattttaattgtttttacacgtttttgttaaagatttaacacattttttgaccctatttatggtagatacaacctatgttacaatctcccc 28798029  T
Q  911 ctataaatacacctctaaacttccccatttcctc 944  Q
     |||||| ||||||||||||||||||||||||||    
T  28798030 ttataaaaacacctctaaacttccccatttcctc 28798063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 913 - 985
Target Start/End: Complemental strand, 36173175 - 36173103
Alignment:
Q  913 ataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 985  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||| ||||    
T  36173175 ataaatacacctctaaacttccccatttcctcacaccatctcacattcccactctcctcctcactctctcccc 36173103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 685 - 807
Target Start/End: Complemental strand, 27761248 - 27761126
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    |||||| |||| | |||||||||||||||| ||||||| ||||||||||||||||| || | ||||||||||||||||| ||  ||| | ||| ||||||    
T  27761248 gcgtgatttaatttgcgcaccttataatctctgcgtgacttaagtcacgcaccactagcctatgcgcgagttaactcacacacgttggccggtagtcaga 27761149  T
Q  785 actgaagaactcacgttttttga 807  Q
    ||| ||||||  |||||||||||    
T  27761148 actcaagaacaaacgttttttga 27761126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 728 - 817
Target Start/End: Original strand, 42039026 - 42039115
Alignment:
Q  728 gtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttgaaccgtgttca 817  Q
    |||||||||||||||| ||||||||||||||||||||||  ||| | ||||||||||||||||||||  |||||||||| || |||||||    
T  42039026 gtcacgcaccactggcctgtgcgcgagttaactcacgcacgttggccggtggtcagaactgaagaacagacgttttttggacggtgttca 42039115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 865 - 985
Target Start/End: Complemental strand, 49261720 - 49261600
Alignment:
Q  865 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaac 964  Q
    ||||||||| |||||| ||||  ||||| |||||||| ||  || ||||||||||  |||| |||||||| |||||||||||| ||||||||||||| ||    
T  49261720 tttttactacatttattgtagtcataacatatgttactattcccacctataaatatccctccaaacttcctcatttcctcacatcatctcacattctcac 49261621  T
Q  965 tctcttcctcactctcccccc 985  Q
    |||| ||||||||||| ||||    
T  49261620 tctcctcctcactctctcccc 49261600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 865 - 989
Target Start/End: Original strand, 372822 - 372947
Alignment:
Q  865 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaac 964  Q
    ||||||||  |||||| |||| |||||| |||||||| ||  || ||||||||| | |||| |||||||||||||| |||||||||||||||||| | |     
T  372822 tttttactgcatttattgtagttataacatatgttaccattcccacctataaattcccctccaaacttccccattttctcacaccatctcacattttcat 372921  T
Q  965 tctcttcctcactctc-ccccctatg 989  Q
    || ||||||||||||| |||||||||    
T  372922 tcacttcctcactctctccccctatg 372947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 686 - 805
Target Start/End: Complemental strand, 9243036 - 9242917
Alignment:
Q  686 cgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    ||||||||||||  | ||||||||||||| ||||||| |||||||||||||||||| || | | ||||||||||||||||||  ||| | ||| ||||||    
T  9243036 cgtgacttaactcacacaccttataatctctgcgtgacttaagtcacgcaccactgagcct-tccgcgagttaactcacgcaagttggccggtagtcaga 9242938  T
Q  785 actgaagaactcacgtttttt 805  Q
    ||||||||||  |||||||||    
T  9242937 actgaagaacaaacgtttttt 9242917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 865 - 961
Target Start/End: Original strand, 40221095 - 40221191
Alignment:
Q  865 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattct 961  Q
    ||||||||| ||||||||||  ||||||||||||||| ||  || ||| ||||| | |||| |||||||| ||||||||||||||||||||||||||    
T  40221095 tttttactacatttatggtatttataacctatgttaccattcccacctgtaaatgcccctccaaacttcctcatttcctcacaccatctcacattct 40221191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 859 - 961
Target Start/End: Complemental strand, 13856027 - 13855925
Alignment:
Q  859 cacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacat 958  Q
    ||||| |||| |||||||| || |||| ||||||||||||||| ||  || ||||||||||  |||| ||| |||| |||||||||||||||||||||||    
T  13856027 cacgttttttgactatattaattgtagttataacctatgttaccattcccacctataaatatccctccaaaattcctcatttcctcacaccatctcacat 13855928  T
Q  959 tct 961  Q
    |||    
T  13855927 tct 13855925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 688 - 806
Target Start/End: Original strand, 38131410 - 38131528
Alignment:
Q  688 tgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaact 787  Q
    |||||||||| ||||||||| ||| || || |||| |||||||||||||||| ||| | ||| ||||||||||||||||  ||  | |||||||| ||||    
T  38131410 tgacttaacttgcgcaccttctaacctctgtgtgacttaagtcacgcaccacgggcctatgcacgagttaactcacgcacgttagccggtggtcacaact 38131509  T
Q  788 gaagaactcacgttttttg 806  Q
    |||||||  ||||||||||    
T  38131510 gaagaacaaacgttttttg 38131528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 688 - 809
Target Start/End: Complemental strand, 31936437 - 31936317
Alignment:
Q  688 tgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaact 787  Q
    ||||||||||  ||||||||||   ||||| |||| |||||||||||||||||||| || |||||||||||||||||||| ||| | | ||||| || ||    
T  31936437 tgacttaactcacgcaccttattg-ctttgtgtgacttaagtcacgcaccactggcctgggcgcgagttaactcacgcaggttggccgatggtctgagct 31936339  T
Q  788 gaagaactcacgttttttgaac 809  Q
     || ||| ||||||||||||||    
T  31936338 caaaaacacacgttttttgaac 31936317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 682 - 766
Target Start/End: Original strand, 2777940 - 2778024
Alignment:
Q  682 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgca 766  Q
    ||||||||||||||||  ||||||||||||  | ||||| | ||||||||| | |||||||| ||||||||||||||||||||||    
T  2777940 gcagcgtgacttaactcacgcaccttataagttctgcgtaacttaagtcacacgccactggcctgtgcgcgagttaactcacgca 2778024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 724 - 806
Target Start/End: Original strand, 372703 - 372785
Alignment:
Q  724 ttaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 806  Q
    ||||||||||||||||||||||||||| |||||||  ||||||| ||| | ||||||| || || |||||| |||||||||||    
T  372703 ttaagtcacgcaccactggcatgtgcgtgagttaatccacgcaggttggccggtggtctgagctcaagaacacacgttttttg 372785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 687 - 762
Target Start/End: Original strand, 14289680 - 14289755
Alignment:
Q  687 gtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactca 762  Q
    |||||||||||||||||||||||||| | || |||| ||||||||| ||||||||   | ||||||||||||||||    
T  14289680 gtgacttaactagcgcaccttataatatatgtgtgacttaagtcacacaccactgatctatgcgcgagttaactca 14289755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 865 - 959
Target Start/End: Complemental strand, 18414113 - 18414019
Alignment:
Q  865 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacatt 959  Q
    ||||||||| ||||||||||| ||||||||||||||  ||  || |||||| |||| |||| |||||||| ||||| |||||| ||| |||||||    
T  18414113 tttttactacatttatggtagttataacctatgttatcattcccacctatatatactcctccaaacttcctcattttctcacatcatttcacatt 18414019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 724 - 806
Target Start/End: Original strand, 32935692 - 32935774
Alignment:
Q  724 ttaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 806  Q
    ||||||||||||||||| || | ||||||||||||||||||||  ||| | ||||| |||| |||||||||  ||||||||||    
T  32935692 ttaagtcacgcaccacttgcctatgcgcgagttaactcacgcacgttggccggtggccagagctgaagaacaaacgttttttg 32935774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 940 - 989
Target Start/End: Complemental strand, 17212619 - 17212570
Alignment:
Q  940 tcctcacaccatctcacattctaactctcttcctcactctcccccctatg 989  Q
    |||||||||||||||||||||| | |||| ||||||||||||||||||||    
T  17212619 tcctcacaccatctcacattctcattctcctcctcactctcccccctatg 17212570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 724 - 806
Target Start/End: Complemental strand, 16525160 - 16525077
Alignment:
Q  724 ttaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactgg-tggtcagaactgaagaactcacgttttttg 806  Q
    |||| |||||||||| ||||||| | |||||||||||||||||| ||||| || |||||||| || || ||| |||||||||||    
T  16525160 ttaactcacgcaccattggcatgggtgcgagttaactcacgcaggttgacgggttggtcagagctcaaaaacacacgttttttg 16525077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 717 - 767
Target Start/End: Complemental strand, 49261871 - 49261821
Alignment:
Q  717 gcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcag 767  Q
    |||||| |||||||||||||||||| ||||||||| ||||||| |||||||    
T  49261871 gcgtgacttaagtcacgcaccactgacatgtgcgcaagttaacccacgcag 49261821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 687 - 736
Target Start/End: Original strand, 31823010 - 31823059
Alignment:
Q  687 gtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcac 736  Q
    ||||||||||| ||||||||||||| |||||||||| |||| ||||||||    
T  31823010 gtgacttaacttgcgcaccttataagctttgcgtgagttaactcacgcac 31823059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 747 - 806
Target Start/End: Original strand, 31823039 - 31823098
Alignment:
Q  747 tgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 806  Q
    |||| |||||||||||||||  ||| | ||||||||||||||||||||  ||||||||||    
T  31823039 tgcgtgagttaactcacgcacgttggccggtggtcagaactgaagaacaaacgttttttg 31823098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 875 - 961
Target Start/End: Complemental strand, 31936251 - 31936165
Alignment:
Q  875 atttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattct 961  Q
    ||||||||||| |||||||||| |||| ||   | ||||||||||| |||| | ||||||| ||||||||||| ||| |||| ||||    
T  31936251 atttatggtagttataacctatattaccattctcacctataaatacccctccatacttccctatttcctcacagcatatcactttct 31936165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 717 - 806
Target Start/End: Complemental strand, 13856148 - 13856059
Alignment:
Q  717 gcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 806  Q
    |||||| |||||||||||| |||||||   ||| | ||||||||||||||| ||| | ||||||| || || |||||| || ||||||||    
T  13856148 gcgtgacttaagtcacgcatcactggccgatgcacaagttaactcacgcaggttggccggtggtctgagctcaagaacacaggttttttg 13856059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 912 - 957
Target Start/End: Complemental strand, 14990200 - 14990155
Alignment:
Q  912 tataaatacacctctaaacttccccatttcctcacaccatctcaca 957  Q
    ||||||||| |||| |||||||||||||| | ||||||||||||||    
T  14990200 tataaatacccctccaaacttccccattttcccacaccatctcaca 14990155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 5e-74; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 606 - 959
Target Start/End: Original strand, 47983569 - 47983915
Alignment:
Q  606 gatttcttctcttctccctatacttttctctcgcacccagctgaaaa-acattaatgcccctgtgctagttaag-catgcagcgtgacttaactagcgca 703  Q
    ||||||| |||||| ||||  ||||||| ||| ||| |||||||||| ||  ||||||||||||| || ||||| || ||||||||||||||||| ||||    
T  47983569 gatttctgctcttccccctgcacttttcgctcccactcagctgaaaagaccataatgcccctgtgttatttaagtcacgcagcgtgacttaactaacgca 47983668  T
Q  704 ccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgtttt 803  Q
    |||||||   | ||||||| |||||||||  |||||||||||||||||||||||||| |||||  ||| | ||||||||||||| |||||| ||||||||    
T  47983669 ccttatatgttctgcgtgagttaagtcacttaccactggcatgtgcgcgagttaactgacgcacgttggccggtggtcagaactaaagaacacacgtttt 47983768  T
Q  804 ttgaaccgtg-ttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttaca 902  Q
    ||| || ||| ||||| |||||||||||||||||| | |||||||||||          || |||| ||||||||||||||| |||||||||||||||||    
T  47983769 ttggacggtgtttcaatgcattttaattggttttgcacgtttttgttaa----------gttttttgactatatttatggtaaatataacctatgttaca 47983858  T
Q  903 atctccccctataaatacacctctaaacttccccatttcctcacaccatctcacatt 959  Q
    |||||||| ||||||||||||||||||||||||  |||||||||| |||||||||||    
T  47983859 atctccccttataaatacacctctaaacttcccattttcctcacatcatctcacatt 47983915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 688 - 957
Target Start/End: Complemental strand, 18844093 - 18843823
Alignment:
Q  688 tgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaact 787  Q
    ||||||||||| | ||| |||||   | ||||||| ||||||||| ||||||||| |||||||| ||||||||||||||  ||| | |||| ||||||||    
T  18844093 tgacttaactaacacactttatatgttctgcgtgacttaagtcacacaccactggtatgtgcgcaagttaactcacgcacgttggccggtgatcagaact 18843994  T
Q  788 gaagaactcacgttttttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgttttt-actatatttatggtaga 886  Q
    ||||||| ||||||||||  || |||||||| |||||||||||| ||||||| |||||||||||    || ||||| ||||| |||||||||||||||||    
T  18843993 gaagaacacacgttttttagacggtgttcaatgcattttaattgattttgtacgtttttgttaagttgttgcacgtttttttgactatatttatggtaga 18843894  T
Q  887 tataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcaca 957  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||    
T  18843893 tataatctatgttacaatctccccctataaatacacctctaaactccctcatttcctcacacaatctcaca 18843823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 702 - 985
Target Start/End: Complemental strand, 5766924 - 5766640
Alignment:
Q  702 caccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgtt 801  Q
    |||||||||| |||||||||  |||||||||||||||||||| ||||||||||||||||||| ||   |||| |||||| ||| || || ||| ||| ||    
T  5766924 caccttataagctttgcgtggcttaagtcacgcaccactggcctgtgcgcgagttaactcacacaaggtgaccggtggttagagcttaaaaacacacttt 5766825  T
Q  802 ttttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgttttta-ctatatttatggtagatataacctatgtta 900  Q
    ||||| ||  || ||||   | |||||||||||||| | ||||||    |    || ||||  |||||  |||| |||||||||||||||||||||||||    
T  5766824 ttttggactttggtcaagtgaatttaattggttttgcacgttttttactatgttttacacgattttttggctatgtttatggtagatataacctatgtta 5766725  T
Q  901 caatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 985  Q
    ||||||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||| |||||| |||||||||| |||||    
T  5766724 caatctccccctataaatacacctccaaactttcccattttcacacaccatctcacattctcactctcctcctcactcttccccc 5766640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 812 - 985
Target Start/End: Complemental strand, 45690599 - 45690425
Alignment:
Q  812 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 911  Q
    ||||||| |||||||||||| ||||  | |||||||||||    || ||||| |||| ||  ||||||||||||||||||||||||||||||||||||||    
T  45690599 tgttcaatgcattttaattgtttttacacgtttttgttaagtttttacacgttttttgaccctatttatggtagatataacctatgttacaatctccccc 45690500  T
Q  912 -tataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 985  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| ||||    
T  45690499 ctataaatacacctctaaacttccccatttcctcacatcatctcacattctcactctcctcctcactctctcccc 45690425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 859 - 989
Target Start/End: Original strand, 27034189 - 27034320
Alignment:
Q  859 cacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacat 958  Q
    ||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||    
T  27034189 cacgttttttgactctatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttctccatttcctcacaccatcttccat 27034288  T
Q  959 tctaactctcttcctcactctc-ccccctatg 989  Q
    ||  |||||| ||||||||||| |||||||||    
T  27034289 tcccactctcctcctcactctctccccctatg 27034320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 874 - 981
Target Start/End: Original strand, 50066978 - 50067084
Alignment:
Q  874 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcct 973  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  50066978 tattaatggtagatataacctatgttacaatc-ccccctataaatacatctctaaacttccccatttcctcacaccatctcacattctcactctcctcct 50067076  T
Q  974 cactctcc 981  Q
    ||||||||    
T  50067077 cactctcc 50067084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 865 - 989
Target Start/End: Complemental strand, 5767540 - 5767416
Alignment:
Q  865 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaac 964  Q
    |||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||| || |||||||||||||| |||||||||||||||||||| ||    
T  5767540 ttttgactatatttatggtagatataacctatgttacaatctcctc-tataaatacacttccaaacttccccattttctcacaccatctcacattctcac 5767442  T
Q  965 tctcttcctcactctc-ccccctatg 989  Q
    |||| |||| |||||| |||||||||    
T  5767441 tctcctcctgactctctccccctatg 5767416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 683 - 805
Target Start/End: Complemental strand, 3660297 - 3660175
Alignment:
Q  683 cagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtca 782  Q
    ||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| |||| | |||||||||||||||||||| |||| | ||||||||    
T  3660297 cagcgtgacttaactagcgcaccttataagctctgcgtgacttaagtcacgcaccattggcctatgcgcgagttaactcacgcaccttggccggtggtca 3660198  T
Q  783 gaactgaagaactcacgtttttt 805  Q
    || |||||||||  |||||||||    
T  3660197 gagctgaagaacaaacgtttttt 3660175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 883 - 980
Target Start/End: Original strand, 47486783 - 47486880
Alignment:
Q  883 tagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctc 980  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| |||||||||| |||||| |||| ||||||    
T  47486783 tagatataacctatgttacaatctccccctataaatacacctctaaacttctccattttctcactccaactcacattctcactctcctcctgactctc 47486880  T

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Target: chr1; HSP #10
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 669 - 806
Target Start/End: Original strand, 39222654 - 39222792
Alignment:
Q  669 gctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcag 767  Q
    |||||||||| || ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||| | ||| ||||||||||||||||     
T  39222654 gctagttaagtcacgcagcgtgacttaactagcgcgccttataatctatgcgtgacttaagtcacgcaccaatggcctatgcacgagttaactcacgcac 39222753  T
Q  768 cttgactggtggtcagaactgaagaactcacgttttttg 806  Q
    | ||   |||||||||| |||||||||  ||||||||||    
T  39222754 catggtcggtggtcagagctgaagaacaaacgttttttg 39222792  T

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Target: chr1; HSP #11
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 658 - 794
Target Start/End: Original strand, 46923718 - 46923855
Alignment:
Q  658 aatgcccctgtgctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagtt 756  Q
    ||||||| || |||||||| | || ||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| | ||||||||||    
T  46923718 aatgcccttgcgctagttacgtcacgcaacgtgacttaactagcgcaccttataatctatgcgtgacttaagtcacgcaccaatggcctatgcgcgagtt 46923817  T
Q  757 aactcacgcagcttgactggtggtcagaactgaagaac 794  Q
    |||||||||| | || | ||||||||||  ||||||||    
T  46923818 aactcacgcaccatgtccggtggtcagagatgaagaac 46923855  T

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Target: chr1; HSP #12
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 685 - 806
Target Start/End: Original strand, 48566726 - 48566847
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    ||||||||||||| ||  ||||||||| |||||||||| ||||||||||||  |||||| | ||||||||||||||||||||  ||| ||||||||||||    
T  48566726 gcgtgacttaacttgcagaccttataacctttgcgtgacttaagtcacgcattactggcctatgcgcgagttaactcacgcacgttggctggtggtcaga 48566825  T
Q  785 actgaagaactcacgttttttg 806  Q
    ||||||||||  ||||||||||    
T  48566826 actgaagaacaaacgttttttg 48566847  T

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Target: chr1; HSP #13
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 865 - 977
Target Start/End: Complemental strand, 23602892 - 23602780
Alignment:
Q  865 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaac 964  Q
    ||||||||| ||||||||||| ||||||||||||||| ||   | ||||||||||  |||||||||||||||||||||||||||||| ||| ||||| ||    
T  23602892 tttttactagatttatggtagttataacctatgttaccattctcacctataaatatccctctaaacttccccatttcctcacaccatttcatattctcac 23602793  T
Q  965 tctcttcctcact 977  Q
    |||| ||||||||    
T  23602792 tctcctcctcact 23602780  T

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Target: chr1; HSP #14
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 688 - 806
Target Start/End: Original strand, 41871704 - 41871822
Alignment:
Q  688 tgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaact 787  Q
    |||||||||| ||||||||||||| || || |||| |||||| ||||||||||||| | ||||||||||||||||||||  ||| | |||||| ||||||    
T  41871704 tgacttaacttgcgcaccttataacctctgtgtgacttaagtaacgcaccactggcctatgcgcgagttaactcacgcacgttggccggtggtaagaact 41871803  T
Q  788 gaagaactcacgttttttg 806  Q
    |||||||  ||||||||||    
T  41871804 gaagaacaaacgttttttg 41871822  T

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Target: chr1; HSP #15
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 685 - 766
Target Start/End: Complemental strand, 5770680 - 5770599
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgca 766  Q
    |||||||||||||  |||||||||||| |||||||||  |||||||||||||||||||| |||||||||| |||||||||||    
T  5770680 gcgtgacttaactcacgcaccttataagctttgcgtggcttaagtcacgcaccactggcctgtgcgcgagctaactcacgca 5770599  T

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Target: chr1; HSP #16
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 682 - 794
Target Start/End: Original strand, 21482871 - 21482983
Alignment:
Q  682 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtc 781  Q
    ||||||||||||||||| | |||||||||| || ||||||| ||||||||||||||||| || | ||| ||||||||||||||||  ||| | | |||||    
T  21482871 gcagcgtgacttaactaacacaccttataagctctgcgtgacttaagtcacgcaccactagcctatgcacgagttaactcacgcacgttggccgatggtc 21482970  T
Q  782 agaactgaagaac 794  Q
    ||| |||||||||    
T  21482971 agagctgaagaac 21482983  T

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Target: chr1; HSP #17
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 907 - 968
Target Start/End: Original strand, 6086477 - 6086538
Alignment:
Q  907 ccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctc 968  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||    
T  6086477 ccccctataaatacacctctaaacttcctcatttcctcacaacatctcacattctcactctc 6086538  T

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Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 682 - 760
Target Start/End: Original strand, 10308439 - 10308517
Alignment:
Q  682 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaact 760  Q
    |||||| |||||||||  ||||||| | || ||||| |||| ||||||||||||||||||||||||||| |||||||||    
T  10308439 gcagcgagacttaactcacgcacctcacaagctttgtgtgacttaagtcacgcaccactggcatgtgcgtgagttaact 10308517  T

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Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 717 - 794
Target Start/End: Original strand, 49597193 - 49597270
Alignment:
Q  717 gcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaac 794  Q
    |||||| |||||||||||||||||||| | ||||||||||||||||||||  |||   ||||||||||||| ||||||    
T  49597193 gcgtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggtcggtggtcagaactaaagaac 49597270  T

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Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 747 - 806
Target Start/End: Original strand, 46178671 - 46178730
Alignment:
Q  747 tgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 806  Q
    ||||||||||||||||||||  ||||| ||||||||||||||||||||  ||||||||||    
T  46178671 tgcgcgagttaactcacgcatgttgaccggtggtcagaactgaagaacaaacgttttttg 46178730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 682 - 760
Target Start/End: Complemental strand, 33686665 - 33686586
Alignment:
Q  682 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaact 760  Q
    |||||| |||||||||  ||||||| | || |||||||||| |||||||||||||||||| || | ||||||||||||||    
T  33686665 gcagcgagacttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaact 33686586  T

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Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 910 - 960
Target Start/End: Original strand, 3782094 - 3782144
Alignment:
Q  910 cctataaatacacctctaaacttccccatttcctcacaccatctcacattc 960  Q
    ||||||||||| |||| |||||||| ||||| |||||||||||||||||||    
T  3782094 cctataaatacccctccaaacttcctcattttctcacaccatctcacattc 3782144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 804
Target Start/End: Complemental strand, 1671447 - 1671324
Alignment:
Q  682 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaactcacgcagcttgactggtggt 780  Q
    |||||||||||||| |  ||||||||| ||  |||||  || |||||||||| ||||||| || | ||||||||||||| ||||||  |||   ||||||    
T  1671447 gcagcgtgacttaattcacgcaccttacaagttttgcaggacttaagtcacgaaccactgagcctctgcgcgagttaacgcacgcaagttggtcggtggt 1671348  T
Q  781 cagaactgaagaactcacgttttt 804  Q
    || |||||||||||  ||||||||    
T  1671347 caaaactgaagaacaaacgttttt 1671324  T

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Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 719 - 806
Target Start/End: Original strand, 9343499 - 9343586
Alignment:
Q  719 gtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 806  Q
    |||| |||||||| |||| ||||||||| || ||||||||||||||||| || || |||| || || || |||| | |||||||||||    
T  9343499 gtgagttaagtcatgcactactggcatgggcacgagttaactcacgcaggttaaccggtgatccgagctcaagagcacacgttttttg 9343586  T

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Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 767
Target Start/End: Complemental strand, 23603076 - 23602993
Alignment:
Q  685 gcgtgacttaactagcgcaccttata-atctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcag 767  Q
    ||||||||||||| | ||| || ||| ||||  |||||| ||||||||||||| ||| || ||||||||||||||||| |||||    
T  23603076 gcgtgacttaactcgtgcatctaatatatctcagcgtgacttaagtcacgcacaactagcttgtgcgcgagttaactcgcgcag 23602993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 910 - 961
Target Start/End: Original strand, 49597385 - 49597436
Alignment:
Q  910 cctataaatacacctctaaacttccccatttcctcacaccatctcacattct 961  Q
    ||||||||||| |||| | ||||||| |||||||||||||||||||| ||||    
T  49597385 cctataaatacccctccatacttccctatttcctcacaccatctcactttct 49597436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 910 - 956
Target Start/End: Original strand, 41871926 - 41871972
Alignment:
Q  910 cctataaatacacctctaaacttccccatttcctcacaccatctcac 956  Q
    ||||||||||| |||| | ||||||| ||||||||||||||||||||    
T  41871926 cctataaatacccctccatacttccctatttcctcacaccatctcac 41871972  T

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Target: chr2 (Bit Score: 102; Significance: 4e-50; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 812 - 961
Target Start/End: Complemental strand, 16710236 - 16710088
Alignment:
Q  812 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 911  Q
    ||||||| |||||||||||||||||| | |||||||||||    |||||||| |||| |||||||||||||||||||||||||| |||||||||||||||    
T  16710236 tgttcaatgcattttaattggttttgcacgtttttgttaagttttttcacgt-ttttgactatatttatggtagatataacctacgttacaatctccccc 16710138  T
Q  912 tataaatacacctctaaacttccccatttcctcacaccatctcacattct 961  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16710137 tataaatacacctctaaactttcccatttcctcacaccatctcacattct 16710088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 812 - 985
Target Start/End: Complemental strand, 22494808 - 22494635
Alignment:
Q  812 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 911  Q
    ||||||| |||||||||||| ||||  | ||||||||||| |  |  ||||| |||| ||  ||||||||||||||||||||||||| ||||||||| ||    
T  22494808 tgttcaatgcattttaattgtttttacacgtttttgttaagatttaacacgttttttcaccctatttatggtagatataacctatgtcacaatctcctcc 22494709  T
Q  912 tataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 985  Q
    ||||||||||||||||||||| | ||||||||||||||| |||||||||| |||||| ||||||||||||||||    
T  22494708 tataaatacacctctaaactttcacatttcctcacaccaactcacattctcactctcctcctcactctcccccc 22494635  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 685 - 806
Target Start/End: Original strand, 29908471 - 29908592
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    ||||||||||||| ||||||||||||| || ||||||| ||||||||||| |||||||| | |||||||||||||||| |||  ||| | |||||| |||    
T  29908471 gcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcgccactggcctatgcgcgagttaactcatgcacgttggccggtggttaga 29908570  T
Q  785 actgaagaactcacgttttttg 806  Q
    ||||||||||  ||||||||||    
T  29908571 actgaagaacaaacgttttttg 29908592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 671 - 794
Target Start/End: Original strand, 12874196 - 12874320
Alignment:
Q  671 tagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagct 769  Q
    |||||||| |||||| ||||||||||| ||||| ||||||||||| | ||||| |||||||||||||||||| | | |||||||||||||||||||| ||    
T  12874196 tagttaagtcatgcaacgtgacttaaccagcgcgccttataatctctacgtgacttaagtcacgcaccactgacctatgcgcgagttaactcacgcaact 12874295  T
Q  770 tgactggtggtcagaactgaagaac 794  Q
    |||  |||||| ||| |||||||||    
T  12874296 tgagcggtggtaagagctgaagaac 12874320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 659 - 806
Target Start/End: Complemental strand, 29132780 - 29132632
Alignment:
Q  659 atgcccctgtgctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagtta 757  Q
    ||||||||| | |||||||| || ||| ||||||||||||| ||||||||||||  | | ||||| |||||||||||||||| ||| | |||||||||||    
T  29132780 atgcccctgcgttagttaagtcacgcaacgtgacttaactaacgcaccttataagttctacgtgacttaagtcacgcaccaccggcctatgcgcgagtta 29132681  T
Q  758 actcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 806  Q
    |||||||||  ||| | |||||||||| |||||||||  ||||||||||    
T  29132680 actcacgcacgttggccggtggtcagagctgaagaacaaacgttttttg 29132632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 627 - 763
Target Start/End: Complemental strand, 16710381 - 16710243
Alignment:
Q  627 acttttctctcgcacccagctgaaaa-acattaatgcccctgtgctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaat 724  Q
    ||||||| ||||||||||  |||||| ||| ||||| || |||| |||||||| || ||||| ||||||||||| |||| ||||||   | ||||||| |    
T  16710381 acttttcgctcgcacccaattgaaaagacaataatgtccatgtgttagttaagtcacgcagcatgacttaactaacgcatcttatatgttctgcgtgagt 16710282  T
Q  725 taagtcacgcaccactggcatgtgcgcgagttaactcac 763  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  16710281 taagtcacgcaccactgacatgtgcacgagttaactcac 16710243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 685 - 794
Target Start/End: Complemental strand, 6903833 - 6903725
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    |||||||||||||   ||||| |||||||| ||||||  ||||||||||||||||||||  |||||||||||||||||| ||  ||| | ||||||||||    
T  6903833 gcgtgacttaactcatgcaccatataatctatgcgtggcttaagtcacgcaccactggccggtgcgcgagttaactcacaca-tttggccggtggtcaga 6903735  T
Q  785 actgaagaac 794  Q
    ||||||||||    
T  6903734 actgaagaac 6903725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 669 - 794
Target Start/End: Original strand, 8556189 - 8556315
Alignment:
Q  669 gctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcag 767  Q
    |||||||||| || ||| |||||||||||| |||||||||||||||| || |||| |||||||||||| || || | | ||| |||||| |||||| ||     
T  8556189 gctagttaagtcacgcaacgtgacttaactggcgcaccttataatctatgtgtgacttaagtcacgcatcaatgccctatgcacgagtttactcacacac 8556288  T
Q  768 cttgactggtggtcagaactgaagaac 794  Q
    | || | |||||||||| |||||||||    
T  8556289 catggccggtggtcagagctgaagaac 8556315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 715 - 784
Target Start/End: Original strand, 28266005 - 28266074
Alignment:
Q  715 ttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    |||||||| ||| |||||||||||||| ||||||||||||||||||||||||  ||||  ||||||||||    
T  28266005 ttgcgtgagttaggtcacgcaccactgacatgtgcgcgagttaactcacgcacgttgatcggtggtcaga 28266074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 910 - 956
Target Start/End: Complemental strand, 20149490 - 20149444
Alignment:
Q  910 cctataaatacacctctaaacttccccatttcctcacaccatctcac 956  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  20149490 cctataaatacccctccaaacttccccatttcctcacaccttctcac 20149444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 747 - 829
Target Start/End: Complemental strand, 20149651 - 20149569
Alignment:
Q  747 tgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttgaaccgtgttcaaagcattttaat 829  Q
    ||||||||||||||||||||  ||| |   |||||| |||||||||||  ||||||||||||| ||| |||| ||||||||||    
T  20149651 tgcgcgagttaactcacgcacgttggccaatggtcataactgaagaacaaacgttttttgaacggtggtcaatgcattttaat 20149569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 910 - 961
Target Start/End: Complemental strand, 25685946 - 25685895
Alignment:
Q  910 cctataaatacacctctaaacttccccatttcctcacaccatctcacattct 961  Q
    ||||||||||| |||| | ||||||| |||||||||||||||||||| ||||    
T  25685946 cctataaatacccctccatacttccctatttcctcacaccatctcactttct 25685895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 683 - 741
Target Start/End: Complemental strand, 32737992 - 32737934
Alignment:
Q  683 cagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg 741  Q
    |||||||||||||  | ||||||||||||  | ||||||| ||||||||||||||||||    
T  32737992 cagcgtgacttaataaacgcaccttataagttgtgcgtgacttaagtcacgcaccactg 32737934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 4e-47; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 841 - 985
Target Start/End: Original strand, 43636462 - 43636606
Alignment:
Q  841 gtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccattt 940  Q
    ||||||||||||   || ||||| |||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43636462 gtttttgttaaatttttacacgttttttgaccctatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttcccctttt 43636561  T
Q  941 cctcacaccatctcacattctaactctcttcctcactctcccccc 985  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||||    
T  43636562 cctcacaccatctcacattctcactctcctcctcactctctcccc 43636606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 865 - 977
Target Start/End: Original strand, 1931498 - 1931610
Alignment:
Q  865 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaac 964  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||| ||||  | ||||| ||    
T  1931498 tttttactatatttacggtagatataacctatgttacaatctccccctataaatatacctccaaacttccacattttctcacatcatcaaaaattctcac 1931597  T
Q  965 tctcttcctcact 977  Q
    || | ||||||||    
T  1931598 tcccctcctcact 1931610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 682 - 806
Target Start/End: Complemental strand, 43693686 - 43693562
Alignment:
Q  682 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtc 781  Q
    ||||||||||||||||||||||||||||||||| || |||| |||| |||||||||| |||| | ||||||||| |||||||||| | || | |||||||    
T  43693686 gcagcgtgacttaactagcgcaccttataatctatgtgtgacttaattcacgcaccaatggcttatgcgcgagtaaactcacgcaccatggccggtggtc 43693587  T
Q  782 agaactgaagaactcacgttttttg 806  Q
    ||| |||||||||  ||||||||||    
T  43693586 agagctgaagaacaaacgttttttg 43693562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 896 - 973
Target Start/End: Original strand, 33775408 - 33775485
Alignment:
Q  896 tgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcct 973  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| ||||    
T  33775408 tgttacaatctccccctataaatacacctctaaacttcctcatttcctcacaccaactcacattctcactctcctcct 33775485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 685 - 806
Target Start/End: Complemental strand, 34471710 - 34471590
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    ||||||||||||| ||||||||||||| || ||||||| ||||||||||||||| |||| | ||||||||||||||||||||  ||| | |||||| |||    
T  34471710 gcgtgacttaacttgcgcaccttataaactatgcgtgacttaagtcacgcaccattggc-tatgcgcgagttaactcacgcacgttggccggtggttaga 34471612  T
Q  785 actgaagaactcacgttttttg 806  Q
    ||||||||||  ||||||||||    
T  34471611 actgaagaacaaacgttttttg 34471590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 685 - 794
Target Start/End: Complemental strand, 23542861 - 23542752
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    ||||||||||| || | |||| ||||| || ||||||| |||| ||||||||||||||| | |||||||||||||||| |||  |||   ||||||||||    
T  23542861 gcgtgacttaaataacacaccgtataagctctgcgtgacttaattcacgcaccactggcctatgcgcgagttaactcatgcacgttggtcggtggtcaga 23542762  T
Q  785 actgaagaac 794  Q
    ||||||||||    
T  23542761 actgaagaac 23542752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 865 - 985
Target Start/End: Complemental strand, 43835262 - 43835142
Alignment:
Q  865 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaac 964  Q
    ||||||||| |||||| |||| || ||| |||||||| ||   | |||||||||||   |  ||||||||||||||| ||||||||||| ||||||| ||    
T  43835262 tttttactacatttattgtagttaaaacatatgttaccattctcacctataaatacctttgcaaacttccccatttcttcacaccatctaacattctcac 43835163  T
Q  965 tctcttcctcactctcccccc 985  Q
    |||| ||||||||||||||||    
T  43835162 tctcctcctcactctcccccc 43835142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 910 - 961
Target Start/End: Original strand, 3964187 - 3964238
Alignment:
Q  910 cctataaatacacctctaaacttccccatttcctcacaccatctcacattct 961  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||||||||||    
T  3964187 cctataaatacccctccaaacttcctcatttcctcacaccatctcacattct 3964238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 716 - 806
Target Start/End: Original strand, 3964009 - 3964098
Alignment:
Q  716 tgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 806  Q
    |||||||||||||||||||| ||||| | ||| ||||||||||||||||||  ||| | |||||| ||| || |||||| || ||||||||    
T  3964009 tgcgtgaattaagtcacgcatcactgtc-tgtccgcgagttaactcacgcaagttggccggtggttagagctcaagaacacatgttttttg 3964098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1700 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: scaffold1700
Description:

Target: scaffold1700; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 859 - 989
Target Start/End: Complemental strand, 1071 - 940
Alignment:
Q  859 cacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacat 958  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1071 cacgtttttttaccctatttatggtagatataacctatgttacaatctctccctataaatacacctctaaacttccccatttcctcacaacatctcacat 972  T
Q  959 tctaactctcttcctcactctc-ccccctatg 989  Q
    ||| |||||| ||||||||||| |||||||||    
T  971 tctcactctcctcctcactctctccccctatg 940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 812 - 968
Target Start/End: Original strand, 35054679 - 35054835
Alignment:
Q  812 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 911  Q
    ||||||| ||||||| |||| ||||  | ||||||||||| |  |  ||||| |||||||  |||||||||||||||||||||||||||||||||| |||    
T  35054679 tgttcaatgcatttttattgtttttacacgtttttgttaagatttaacacgtttttttaccttatttatggtagatataacctatgttacaatctctccc 35054778  T
Q  912 tataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctc 968  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  35054779 tataaatacacctctaaacttccccatttcctcacaccaactcacattctcactctc 35054835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 687 - 828
Target Start/End: Complemental strand, 23912366 - 23912225
Alignment:
Q  687 gtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaac 786  Q
    |||||||||||  |||||||||||| || ||||||| |||||||| |||||||||||||||||||||||||| |||||||  ||| | |||||| ||| |    
T  23912366 gtgacttaactcacgcaccttataagctctgcgtgacttaagtcatgcaccactggcatgtgcgcgagttaattcacgcaagttggccggtggttagagc 23912267  T
Q  787 tgaagaactcacgttttttgaaccgtgttcaaagcattttaa 828  Q
    | |||||  ||||||||||| || ||| |||| |||||||||    
T  23912266 tcaagaatacacgttttttggacggtggtcaatgcattttaa 23912225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 859 - 934
Target Start/End: Original strand, 9400164 - 9400239
Alignment:
Q  859 cacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttcc 934  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  9400164 cacgtttttttagtatatttatggtagatataacctatgttacaatctccccctataaatactcctccaaacttcc 9400239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 692 - 806
Target Start/End: Original strand, 319200 - 319314
Alignment:
Q  692 ttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaag 791  Q
    |||||| ||||||||||||| || || |||| |||||||| ||||||||||  | ||||||||||||||||||||  |||  ||||||||||||||||||    
T  319200 ttaacttgcgcaccttataacctctgtgtgacttaagtcatgcaccactggtctatgcgcgagttaactcacgcacgttgggtggtggtcagaactgaag 319299  T
Q  792 aactcacgttttttg 806  Q
    |||  ||||||||||    
T  319300 aacaaacgttttttg 319314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 685 - 794
Target Start/End: Original strand, 13312555 - 13312664
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    |||||||||||||| |||||||||||| || ||||||| |||||||||| ||||||||| || || |||||||||||||| |  ||| | | ||||||||    
T  13312555 gcgtgacttaactaacgcaccttataagctctgcgtgacttaagtcacgaaccactggcctgggcacgagttaactcacgtacgttggccgatggtcaga 13312654  T
Q  785 actgaagaac 794  Q
    ||||||||||    
T  13312655 actgaagaac 13312664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 724 - 766
Target Start/End: Original strand, 17399041 - 17399083
Alignment:
Q  724 ttaagtcacgcaccactggcatgtgcgcgagttaactcacgca 766  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  17399041 ttaagtcacgcaccactggcatgtgtgcgagttaactcacgca 17399083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 706 - 767
Target Start/End: Original strand, 9521402 - 9521463
Alignment:
Q  706 ttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcag 767  Q
    |||||| || ||||||| |||||||||||||||||||||||| ||||| ||||||| |||||    
T  9521402 ttataagctctgcgtgacttaagtcacgcaccactggcatgttcgcgacttaactcccgcag 9521463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 910 - 961
Target Start/End: Complemental strand, 23912133 - 23912082
Alignment:
Q  910 cctataaatacacctctaaacttccccatttcctcacaccatctcacattct 961  Q
    ||||||||||| |||| ||||||| | |||||||||||||||||||||||||    
T  23912133 cctataaatacccctccaaacttctcaatttcctcacaccatctcacattct 23912082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 2e-42; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 789 - 985
Target Start/End: Complemental strand, 3460304 - 3460108
Alignment:
Q  789 aagaactcacgttttttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagata 888  Q
    |||||| ||||||||||  ||  ||||||| |||||||||||| ||||  | ||||||||||| |  |  ||||| |||| ||  ||||||||||| |||    
T  3460304 aagaacacacgtttttttgactttgttcaatgcattttaattgtttttacacgtttttgttaagatttaacacgttttttgaccctatttatggtaaata 3460205  T
Q  889 taacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 985  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| ||||||| ||||    
T  3460204 taacatatgttacaatctcccgctataaatacacctctaaacttccccatttcctcacaccaactcacattctcactctcctccccactctctcccc 3460108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 876 - 985
Target Start/End: Complemental strand, 4845587 - 4845478
Alignment:
Q  876 tttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctca 975  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||| ||||||    
T  4845587 tttatggtagatataacctacgttacaatctccccctataaatacacctctaaactttcccatttcctcgcaccaactcacattctcactctcctcctca 4845488  T
Q  976 ctctcccccc 985  Q
    ||||| ||||    
T  4845487 ctctctcccc 4845478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 669 - 806
Target Start/End: Original strand, 6427235 - 6427373
Alignment:
Q  669 gctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcag 767  Q
    |||||||||| | ||||||||||||||||||||||||||||||| || ||||||| ||||||||||||| |||||| | ||||||||||||||||||||     
T  6427235 gctagttaagtcttgcagcgtgacttaactagcgcaccttataaactatgcgtgacttaagtcacgcacaactggcctatgcgcgagttaactcacgcac 6427334  T
Q  768 cttgactggtggtcagaactgaagaactcacgttttttg 806  Q
    |||| | |||| | ||| |||||||||  ||||||||||    
T  6427335 cttggccggtgattagagctgaagaacaaacgttttttg 6427373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 874 - 984
Target Start/End: Complemental strand, 40014270 - 40014161
Alignment:
Q  874 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcct 973  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||| ||||    
T  40014270 tatttatggtagatataacatatgttacaatc-ccctctataaatacacctctaaactttcccgtttcctcacaccaactcacattctcactctcctcct 40014172  T
Q  974 cactctccccc 984  Q
    ||||| |||||    
T  40014171 cactccccccc 40014161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 670 - 791
Target Start/End: Complemental strand, 7084106 - 7083984
Alignment:
Q  670 ctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagc 768  Q
    ||||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | |||| | |||||||||||||||| ||| |    
T  7084106 ctagttaagtcacgcagcgtgacttaactagcgcaccttataatctatgcgtgacttaagtcacgcactaatggcctatgcgcgagttaactcatgcacc 7084007  T
Q  769 ttgactggtggtcagaactgaag 791  Q
    ||| | |||||||||| ||||||    
T  7084006 ttggccggtggtcagagctgaag 7083984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 718 - 945
Target Start/End: Original strand, 2599801 - 2600028
Alignment:
Q  718 cgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttgaaccgtgttca 817  Q
    ||||| |||||||||||||||||  |  ||||||| |||||||||||||| ||    ||||||| ||||| |||||| ||||||||||| |  |||||||    
T  2599801 cgtgacttaagtcacgcaccactaaccggtgcgcgtgttaactcacgcaggtttgtcggtggtctgaactcaagaacacacgttttttggattgtgttca 2599900  T
Q  818 aagcattttaattggttttgtatgtttttgttaaaaaattt--cacgtgtttttactatatttatggtagatataacctatgttacaatctccccctata 915  Q
    |   |||||||||||||||| |  ||||| |||  |  |||  ||||| |||| ||||||||| |||||||||| || |||||||||||| |||||||||    
T  2599901 agtaattttaattggttttgcacattttt-ttactatgttttacacgttttttgactatatttgtggtagatattacatatgttacaatc-ccccctata 2599998  T
Q  916 aatacacctctaaacttccccatttcctca 945  Q
    |||||||||| |||||||  ||||||||||    
T  2599999 aatacacctccaaacttcaacatttcctca 2600028  T

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Target: chr5; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 682 - 806
Target Start/End: Complemental strand, 1173057 - 1172933
Alignment:
Q  682 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtc 781  Q
    ||||||||||||||| |||||||||||||| || ||||||| |||||| ||||||||||||| | ||||| |||||||||||||| ||||   | ||||     
T  1173057 gcagcgtgacttaacaagcgcaccttataacctctgcgtgacttaagttacgcaccactggcctatgcgccagttaactcacgcaccttggtcgatggtt 1172958  T
Q  782 agaactgaagaactcacgttttttg 806  Q
    ||| |||||||||  ||||||||||    
T  1172957 agagctgaagaacaaacgttttttg 1172933  T

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Target: chr5; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 859 - 989
Target Start/End: Complemental strand, 9883851 - 9883720
Alignment:
Q  859 cacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacat 958  Q
    ||||| |||| |||| ||||||||||  ||||||||||||||| ||     ||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  9883851 cacgttttttgactacatttatggtacttataacctatgttaccattcatacctataaatacccctccaaacttccccattttctcacaccatctcacat 9883752  T
Q  959 tctaactctcttcctcactctc-ccccctatg 989  Q
    ||| |||||| |||||||| || |||||||||    
T  9883751 tctcactctcctcctcactatctccccctatg 9883720  T

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Target: chr5; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 914 - 985
Target Start/End: Complemental strand, 19401788 - 19401717
Alignment:
Q  914 taaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 985  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  19401788 taaatacacctctaaaattctccatttcctcacaccatctcacattctcactctcctcctcactctcccccc 19401717  T

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Target: chr5; HSP #10
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 686 - 806
Target Start/End: Complemental strand, 41758829 - 41758709
Alignment:
Q  686 cgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaa 785  Q
    |||||||||||| |||||  |||||| || ||||||| || |||||||||||| || | | |||||||||||||||| |||  ||| |||||||||||||    
T  41758829 cgtgacttaacttgcgcattttataacctctgcgtgacttgagtcacgcaccattgacctatgcgcgagttaactcatgcacgttggctggtggtcagaa 41758730  T
Q  786 ctgaagaactcacgttttttg 806  Q
    |||||||||  ||||||||||    
T  41758729 ctgaagaacaaacgttttttg 41758709  T

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Target: chr5; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 713 - 806
Target Start/End: Original strand, 10532789 - 10532882
Alignment:
Q  713 ctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 806  Q
    ||||| |||| |||||||| ||||||||||| ||||||||||||||||||||||  ||| | |||||||||| |||||||||  ||||||||||    
T  10532789 ctttgtgtgagttaagtcatgcaccactggcttgtgcgcgagttaactcacgcaagttggccggtggtcagagctgaagaacaaacgttttttg 10532882  T

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Target: chr5; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 685 - 806
Target Start/End: Complemental strand, 28784888 - 28784767
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    |||||||||||| | | ||||||||||| | ||||||| ||||||||| | |||||||| || | |||||||||||||||||  |||   ||||||||||    
T  28784888 gcgtgacttaacaaacacaccttataatttatgcgtgacttaagtcacaccccactggcctgggtgcgagttaactcacgcacgttggtcggtggtcaga 28784789  T
Q  785 actgaagaactcacgttttttg 806  Q
    ||||||||||  ||||||||||    
T  28784788 actgaagaacaaacgttttttg 28784767  T

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Target: chr5; HSP #13
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 910 - 968
Target Start/End: Complemental strand, 10399170 - 10399112
Alignment:
Q  910 cctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctc 968  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||    
T  10399170 cctataaatacccctccaaacttccccatttcctcacaccatctcacattctcactctc 10399112  T

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Target: chr5; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 865 - 961
Target Start/End: Original strand, 19044036 - 19044132
Alignment:
Q  865 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattct 961  Q
    ||||||| | |||||| |||  ||||||||||||||  ||  || ||||||||||| |||| |||||||||||||| ||||||||||||||||||||    
T  19044036 tttttacaacatttattgtatttataacctatgttatcattcccacctataaatacccctccaaacttccccattttctcacaccatctcacattct 19044132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 686 - 765
Target Start/End: Complemental strand, 11125901 - 11125823
Alignment:
Q  686 cgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgc 765  Q
    ||||||||||||  |||||||||||  || ||||||| |||||||| ||| |||||||||||||||||||||||||||||    
T  11125901 cgtgacttaactcacgcaccttatag-ctctgcgtgacttaagtcatgcatcactggcatgtgcgcgagttaactcacgc 11125823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 686 - 766
Target Start/End: Original strand, 16100850 - 16100930
Alignment:
Q  686 cgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgca 766  Q
    |||| |||||||  ||||||||||||    ||||||| ||||||||||||||| | || ||||||||||||||||||||||    
T  16100850 cgtggcttaactcacgcaccttataagtcctgcgtgacttaagtcacgcaccatttgcctgtgcgcgagttaactcacgca 16100930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 682 - 791
Target Start/End: Complemental strand, 1082009 - 1081899
Alignment:
Q  682 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaactcacgcagcttgactggtggt 780  Q
    |||||| |||||||||  ||||||| | || || ||||||| |||||||||||||||||| || | ||||||||||||||  ||||  ||||| ||||||    
T  1082009 gcagcgagacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggt 1081910  T
Q  781 cagaactgaag 791  Q
     | ||||||||    
T  1081909 aaaaactgaag 1081899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 806
Target Start/End: Complemental strand, 20202726 - 20202606
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 784  Q
    |||||||||||||  |||| ||||||  || ||||||| || |||||| |||||||||| || |||||||||||||| ||||| ||| |  |||||| ||    
T  20202726 gcgtgacttaactcacgcatcttatag-ctctgcgtgacttgagtcacacaccactggcctgggcgcgagttaactcgcgcaggttggccagtggtctga 20202628  T
Q  785 actgaagaactcacgttttttg 806  Q
     || |||||| ||| |||||||    
T  20202627 gctcaagaacacacattttttg 20202606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 741
Target Start/End: Original strand, 12144012 - 12144071
Alignment:
Q  682 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg 741  Q
    |||||| |||||||||  ||||||| | || |||||||||| ||||||||||||||||||    
T  12144012 gcagcgagacttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactg 12144071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 910 - 961
Target Start/End: Complemental strand, 41758605 - 41758554
Alignment:
Q  910 cctataaatacacctctaaacttccccatttcctcacaccatctcacattct 961  Q
    ||||||||||| |||| | ||||||| |||||||||||||||||||| ||||    
T  41758605 cctataaatacccctccatacttccctatttcctcacaccatctcactttct 41758554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 4995801 - 4995744
Alignment:
Q  158 attttaaatttattaaataactgatatacatagtttatattataaactaaatacatca 215  Q
    |||||||||||||||||||| |||| ||  |||||||||||||| | || ||||||||    
T  4995801 attttaaatttattaaataaatgatttatctagtttatattatagattagatacatca 4995744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 705 - 805
Target Start/End: Original strand, 3987 - 4088
Alignment:
Q  705 cttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgtttt 803  Q
    |||||||||| ||||||| |||||||||||||||||| || | | ||||||||||||||||||  ||||| ||||||||||||||||||||  |||||||    
T  3987 cttataatctctgcgtgacttaagtcacgcaccactgagcctttccgcgagttaactcacgcaagttgaccggtggtcagaactgaagaacaaacgtttt 4086  T
Q  804 tt 805  Q
    ||    
T  4087 tt 4088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0861 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 671 - 806
Target Start/End: Complemental strand, 3858 - 3722
Alignment:
Q  671 tagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagct 769  Q
    |||||||| |||||| ||||||||| ||| | |||||||||| |||||  ||| ||||||||| |||||||||| | |||||||||||||||||||| ||    
T  3858 tagttaagtcatgcaacgtgacttagctaacacaccttataagctttgtctgacttaagtcacacaccactggcctatgcgcgagttaactcacgcacct 3759  T
Q  770 tgactggtggtcagaactgaagaactcacgttttttg 806  Q
    || | |||||||| | || ||||||  ||||||||||    
T  3758 tggccggtggtcaaagctaaagaacaaacgttttttg 3722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 877 - 961
Target Start/End: Complemental strand, 16006 - 15922
Alignment:
Q  877 ttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattct 961  Q
    ||||||||| ||||||||||  ||| ||  || ||||||||||| |||  |||||||| ||||||||||||||||||||||||||    
T  16006 ttatggtagttataacctatactaccattcccacctataaataccccttcaaacttcctcatttcctcacaccatctcacattct 15922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 718 - 806
Target Start/End: Complemental strand, 16168 - 16079
Alignment:
Q  718 cgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactgg-tggtcagaactgaagaactcacgttttttg 806  Q
    ||||| ||||||||||| ||| |||| |||||||| |||||||||||||| ||| | || |||||||| || || ||| |||||||||||    
T  16168 cgtgacttaagtcacgctccagtggcctgtgcgcgtgttaactcacgcaggttggccggttggtcagagctcaaaaacacacgttttttg 16079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 702 - 805
Target Start/End: Original strand, 25584 - 25688
Alignment:
Q  702 caccttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgt 800  Q
    ||||||||||||| ||||||| ||||| |||| |||||   || | ||||||||||||||||||||  ||| | ||||||||||||||||||||  ||||    
T  25584 caccttataatctatgcgtgacttaaggcacgtaccacccagcctttgcgcgagttaactcacgcaagttggccggtggtcagaactgaagaacaaacgt 25683  T
Q  801 ttttt 805  Q
    |||||    
T  25684 ttttt 25688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 760
Target Start/End: Original strand, 20062 - 20138
Alignment:
Q  685 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaact 760  Q
    |||||| ||||||  ||||||| | || |||||||||| |||||||||||||||||| || | ||||||||||||||    
T  20062 gcgtgagttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaact 20138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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