View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16159_high_23 (Length: 261)
Name: NF16159_high_23
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16159_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 7070756 - 7070661
Alignment:
| Q |
106 |
cccattttccactactataaccaagttttcatcatattaatttccaatccccatcatgtcgcctcttataacccccataccatccttcccacctaac |
202 |
Q |
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| T |
7070756 |
cccattttccactactataaccaagttttcatcatactaatttccaatccccatcatgtcgcctcttataacgtccataacat-cttcccacctaac |
7070661 |
T |
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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 7070808 - 7070754
Alignment:
| Q |
16 |
ataaaattatcaactaaataaaatgacctactaaatctagaatataaaggccccc |
70 |
Q |
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| T |
7070808 |
ataaaagtatcaactaaataaaatgacatactaaatctagaatataaaggccccc |
7070754 |
T |
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