View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16159_high_4 (Length: 494)
Name: NF16159_high_4
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16159_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Original strand, 39571764 - 39572230
Alignment:
| Q |
18 |
aacatcccaagggtaggtaatacactactgaccttatcttgccactcaaatttctttcgtttctcgatttcattctttaatttataatttgttttcttgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39571764 |
aacatcccaagggtaggtaatacactactgaccttatcttgccactcaaatttctttcgtttctcgatttcattctttaatttataatttgttttcttgg |
39571863 |
T |
|
| Q |
118 |
aacattaatgctgcaattttagtaatggtgtgtttttgttttgtatgaaacttatatccatggtatgtatgtgtttttgattccagggtatatttgcttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39571864 |
aacattaatgctgcaattttagtaatggtgtgtttttgttttgtgtgaaacttatatccatggtatgtatgtgtttttgattccagggtatatttgcttt |
39571963 |
T |
|
| Q |
218 |
tttggcaagctcaattcctattttggtgggaatcattgttggtaagttcacacttcatatactttcttgtatttctgcagtgtcttgttatttgttaagt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39571964 |
tttggcaagctcaattcctattttggtgggaatcattgttggtaagttcacacttcatatactttcttgtatttctgcagtgtcttgttatttgttaagc |
39572063 |
T |
|
| Q |
318 |
gttggtaagacgaattcctgctttgccaccactattttttagcgtgggacaaacaaacaatgagtagcacgggacaaaccaacacggactagcgtggacc |
417 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39572064 |
gttggcaagacgaattcctgcttggccaccactattttctagcgtggaacaaacaaacaatgagtagcacgggacaaaccaacacggactagcgtggacc |
39572163 |
T |
|
| Q |
418 |
agaattcagctagtgtctagttagcatctgccggataattggttgatgttcatatacaatggtacct |
484 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39572164 |
agaattcagctaatgtctagttagcatctgccggataattggttgatgttcatatacaatggtacct |
39572230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University