View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16159_high_5 (Length: 488)

Name: NF16159_high_5
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16159_high_5
NF16159_high_5
[»] chr5 (4 HSPs)
chr5 (19-475)||(13674396-13674855)
chr5 (103-183)||(22416430-22416510)
chr5 (111-195)||(24249000-24249084)
chr5 (98-170)||(27689091-27689163)
[»] chr2 (3 HSPs)
chr2 (98-170)||(22436969-22437041)
chr2 (101-195)||(32475441-32475535)
chr2 (120-170)||(18690397-18690447)
[»] chr1 (4 HSPs)
chr1 (75-192)||(43074962-43075081)
chr1 (139-195)||(38571059-38571115)
chr1 (23-126)||(7492910-7493013)
chr1 (111-197)||(11237278-11237364)
[»] chr7 (2 HSPs)
chr7 (82-195)||(18043926-18044039)
chr7 (101-195)||(2670078-2670172)
[»] chr8 (2 HSPs)
chr8 (111-195)||(21217773-21217857)
chr8 (89-169)||(28285593-28285673)
[»] chr6 (1 HSPs)
chr6 (114-197)||(14942693-14942776)
[»] chr4 (1 HSPs)
chr4 (106-170)||(47261209-47261273)
[»] chr3 (1 HSPs)
chr3 (96-200)||(51135463-51135567)


Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Complemental strand, 13674855 - 13674396
Alignment:
Q  19 agagtggacattgttgagtatcatcatccatcgtccaactcaaatggatgcatctggttcacacaaatgtagctcatgaacaacgacgtgaaaaccatgt 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  13674855 agagtggacattgttgagtatcatcatccatcgttcaactcaaatggatgcatttggttcacacaaatgtagctcatgagcaacgacgtgaaaaccatgt 13674756  T
Q  119 tctcaatatttgaccagtatagttctaaagaaccgatctagttggacgcttctttgataagatctttcgaagatatttggaagagttcaatttcgtccag 218  Q
    |||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  13674755 tctcaatatttgaccagtatagttctaaagaatcaatccagttggacgcttctttggtaagatctttcgaaaatatttggaagagttcaatttcgtccag 13674656  T
Q  219 ---ctatgaagaaatcagggattgcatggagaaagaccactaaaactcaatatccatgcaagacaacaagatccccaacaacataagtacggacaaaggt 315  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13674655 gagctatgaagaaatcagggattgcatggagaaagaccactaaaactcaatatccatgcaagacaacaagatccccaacaacatatgtacggacaaaggt 13674556  T
Q  316 agttaactatcaattatgtatggaaacaagaaccttgcaattaattaaaactgatgaaaatgggattgaaacaatggcattgcagagtcaaaaagatnnn 415  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||       
T  13674555 agttaactatcaattatgtatggaaacaagaaccttgcaattgattgaaactgatgaaattgggattgaaacaatggcattgcagagtcaaaaagataaa 13674456  T
Q  416 nnnnnncactctgctgggatcatttctatccattacattgttgatgcaccccacaggttc 475  Q
          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13674455 aaaaaacactctgctgggatcatttctatccattacattgttgatgcaccctacaggttc 13674396  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 22416430 - 22416510
Alignment:
Q  103 gacgtgaaaaccatgttctcaatatttgaccagtatagttctaaagaaccgatctagttggacgcttctttgataagatct 183  Q
    ||||||| |||||||||||||| || ||  ||||| ||| |||||| |||| || ||||||||||||| ||| | ||||||    
T  22416430 gacgtgagaaccatgttctcaaaatgtggtcagtacagtactaaaggaccggtcgagttggacgcttcgttggtcagatct 22416510  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 24249000 - 24249084
Alignment:
Q  111 aaccatgttctcaatatttgaccagtatagttctaaagaaccgatctagttggacgcttctttgataagatctttcgaagatatt 195  Q
    |||||||||||| | ||||| |||| |||||||||||| |  |||| | ||||| ||||| ||| | | ||||||||||||||||    
T  24249000 aaccatgttctcgacatttggccagcatagttctaaaggaatgatcgacttggatgcttccttggtcaaatctttcgaagatatt 24249084  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 27689091 - 27689163
Alignment:
Q  98 acaacgacgtgaaaaccatgttctcaatatttgaccagtatagttctaaagaaccgatctagttggacgcttc 170  Q
    ||||| |||||| |||||||||||| || ||||  ||||| ||| ||| || ||||||| |||||||||||||    
T  27689091 acaacaacgtgagaaccatgttctcgatctttggtcagtacagtactataggaccgatcaagttggacgcttc 27689163  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 22437041 - 22436969
Alignment:
Q  98 acaacgacgtgaaaaccatgttctcaatatttgaccagtatagttctaaagaaccgatctagttggacgcttc 170  Q
    |||||||||||| ||||||||||||||||||    |||||| ||||||||| |||||| ||||||||||||||    
T  22437041 acaacgacgtgagaaccatgttctcaatattcagtcagtattgttctaaaggaccgatatagttggacgcttc 22436969  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 32475535 - 32475441
Alignment:
Q  101 acgacgtgaaaaccatgttctcaatatttgaccagtatagttctaaagaaccgatctagttggacgcttctttgataagatctttcgaagatatt 195  Q
    ||||||||| ||||||||| || ||||||    |||| | | |||||| ||||||| |||||||||||| |||||| ||||||||| ||||||||    
T  32475535 acgacgtgagaaccatgttatcgatattttgttagtacattactaaaggaccgatcgagttggacgcttatttgattagatctttcaaagatatt 32475441  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 18690447 - 18690397
Alignment:
Q  120 ctcaatatttgaccagtatagttctaaagaaccgatctagttggacgcttc 170  Q
    ||||||||||| ||||||||||||||||| ||  ||| |||||||||||||    
T  18690447 ctcaatatttggccagtatagttctaaaggactaatcaagttggacgcttc 18690397  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 43075081 - 43074962
Alignment:
Q  75 gttcacacaaatgtagctcatgaacaac--gacgtgaaaaccatgttctcaatatttgaccagtatagttctaaagaaccgatctagttggacgcttctt 172  Q
    |||||| || ||| ||||||||||||||  ||||||| |||||||||||| ||||||   ||||||||||| |||  ||| ||| ||||||||||||| |    
T  43075081 gttcacccatatgaagctcatgaacaacacgacgtgagaaccatgttctcgatatttagtcagtatagttcgaaatgaccaatcgagttggacgcttcct 43074982  T
Q  173 tgataagatctttcgaagat 192  Q
    || |  ||||||||||||||    
T  43074981 tggttggatctttcgaagat 43074962  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 38571059 - 38571115
Alignment:
Q  139 agttctaaagaaccgatctagttggacgcttctttgataagatctttcgaagatatt 195  Q
    |||||||||||||||||| ||||||||||||| ||| |  |||||||| ||||||||    
T  38571059 agttctaaagaaccgatcaagttggacgcttccttggtcggatctttcaaagatatt 38571115  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 7492910 - 7493013
Alignment:
Q  23 tggacattgttgagtatcatcatccatcgtccaactcaaatggatgcatctggttcacacaaatgtagctcatgaacaacgacgtgaaaaccatgttctc 122  Q
    |||||| |||||||||||| ||| |||||  |||||||| |||| || ||| ||||||| | ||| |||| | |||  || |||||| ||||||||||||    
T  7492910 tggacagtgttgagtatcaacattcatcgatcaactcaactggaagcgtctagttcacaaagatgaagctaaggaatgacaacgtgagaaccatgttctc 7493009  T
Q  123 aata 126  Q
    ||||    
T  7493010 aata 7493013  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 11237364 - 11237278
Alignment:
Q  111 aaccatgttctcaatatttgaccagtatagttctaaagaaccgatctagttggacgcttctttgataagatctttcgaagatatttg 197  Q
    ||||||||||||||||||||  ||||| | | |||||| ||| ||| |||| ||   ||| ||| ||||||||||||||||||||||    
T  11237364 aaccatgttctcaatatttggtcagtacaatactaaaggaccaatcgagttagagatttcgttggtaagatctttcgaagatatttg 11237278  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 195
Target Start/End: Complemental strand, 18044039 - 18043926
Alignment:
Q  82 caaatgtagctcatgaacaacgacgtgaaaaccatgttctcaatatttgaccagtatagttctaaagaaccgatctagttggacgcttctttgataagat 181  Q
    |||||| |||||| |||| |||||||||||||||| ||||| ||||||   ||||| | | |||||| ||||||  ||||| || |||||||| | || |    
T  18044039 caaatgaagctcaggaacgacgacgtgaaaaccatattctcgatattttgtcagtacaatactaaaggaccgattgagttgaactcttctttggtcaggt 18043940  T
Q  182 ctttcgaagatatt 195  Q
    ||||||||||||||    
T  18043939 ctttcgaagatatt 18043926  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 2670172 - 2670078
Alignment:
Q  101 acgacgtgaaaaccatgttctcaatatttgaccagtatagttctaaagaaccgatctagttggacgcttctttgataagatctttcgaagatatt 195  Q
    ||||||||| ||| ||||||||||||||||  || |  | | |||||| ||||||  ||||||||||||| ||| |||||||||| |||||||||    
T  2670172 acgacgtgagaacaatgttctcaatatttggtcaatgcattactaaaggaccgattgagttggacgcttcattggtaagatcttttgaagatatt 2670078  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 21217857 - 21217773
Alignment:
Q  111 aaccatgttctcaatatttgaccagtatagttctaaagaaccgatctagttggacgcttctttgataagatctttcgaagatatt 195  Q
    |||||||||||  |||||||  ||||||||||||||| || ||||| ||||||||||||| ||| | | ||||||| ||||||||    
T  21217857 aaccatgttcttgatatttggtcagtatagttctaaataatcgatcgagttggacgcttcattggtcatatctttcaaagatatt 21217773  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 28285673 - 28285593
Alignment:
Q  89 agctcatgaacaacgacgtgaaaaccatgttctcaatatttgaccagtatagttctaaagaaccgatctagttggacgctt 169  Q
    ||||||||||| ||||||||| |||||| |||||||| ||||  |||||||||  || ||  |||||| ||||||||||||    
T  28285673 agctcatgaacgacgacgtgagaaccatattctcaatctttggtcagtatagtaatagagggccgatcgagttggacgctt 28285593  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 14942693 - 14942776
Alignment:
Q  114 catgttctcaatatttgaccagtatagttctaaagaaccgatctagttggacgcttctttgataagatctttcgaagatatttg 197  Q
    |||||||||  ||||| |||||||||||||||||  |  |||| ||||||||||||| ||| | |||||||| |||||||||||    
T  14942693 catgttctccttattttaccagtatagttctaaatgattgatcgagttggacgcttccttggtcagatcttttgaagatatttg 14942776  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 47261273 - 47261209
Alignment:
Q  106 gtgaaaaccatgttctcaatatttgaccagtatagttctaaagaaccgatctagttggacgcttc 170  Q
    |||| |||||||||||  |||||||| ||||||||||| || | ||||||| |||| ||||||||    
T  47261273 gtgagaaccatgttctttatatttgatcagtatagttcaaatggaccgatcaagttagacgcttc 47261209  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 51135463 - 51135567
Alignment:
Q  96 gaacaacgacgtgaaaaccatgttctcaatatttgaccagtatagttctaaagaaccgatctagttggacgcttctttgataagatctttcgaagatatt 195  Q
    |||||||| ||||| |||||||||||  ||| |||  ||||| |||||||||| ||| ||| |||||||| ||||  || | |||| |||| ||||||||    
T  51135463 gaacaacgtcgtgagaaccatgttcttgatagttggtcagtacagttctaaaggaccaatcgagttggacacttccctggttagatatttccaagatatt 51135562  T
Q  196 tggaa 200  Q
     ||||    
T  51135563 cggaa 51135567  T

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