View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16159_low_12 (Length: 396)
Name: NF16159_low_12
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16159_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 5026415 - 5026536
Alignment:
| Q |
16 |
aaaatatggcaaattatagcttccaaattcttttgagtaattaaatgaaatgaggcttccatattattctagaaatttgtcttcttcaaaaacaaatatt |
115 |
Q |
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| T |
5026415 |
aaaatatggcaaattatagcttccaaagtcttttgagtaattaaatgaaatgaggcttccatattattctagaaatttgtcttcttcaaaaacaaatatt |
5026514 |
T |
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| Q |
116 |
attctagaaaaattaatttata |
137 |
Q |
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| T |
5026515 |
attctagaaaaattcatttata |
5026536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 162 - 288
Target Start/End: Original strand, 5026560 - 5026685
Alignment:
| Q |
162 |
ctagcatctgaagtaggaattgaattatcataaaatcatattgaagccagttcagaaaaagcttgactttgtcttgttatatgtgaagtnnnnnnnnnnt |
261 |
Q |
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| T |
5026560 |
ctagcatctgaagtaggaattgaattatcataaaatcatattgaagccagttcagaaaaagcttgactttgtcttgttatatgtgaagt-aaaaaaaaat |
5026658 |
T |
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| Q |
262 |
tacaagttactattactctcatccacc |
288 |
Q |
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| T |
5026659 |
tacaagttactattactctcatccacc |
5026685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 339 - 378
Target Start/End: Original strand, 5026736 - 5026775
Alignment:
| Q |
339 |
ttttctaatgataagaaactgtgttaacagtacatttttg |
378 |
Q |
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| T |
5026736 |
ttttctaatgataagaaactgtgttaacagtacatttttg |
5026775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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