View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16159_low_13 (Length: 393)

Name: NF16159_low_13
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16159_low_13
NF16159_low_13
[»] chr4 (7 HSPs)
chr4 (18-373)||(1527814-1528170)
chr4 (18-366)||(6006460-6006809)
chr4 (18-197)||(12119929-12120109)
chr4 (193-373)||(12118921-12119103)
chr4 (327-373)||(55908339-55908385)
chr4 (18-131)||(55908582-55908695)
chr4 (19-75)||(1495832-1495888)
[»] chr5 (2 HSPs)
chr5 (18-213)||(41901310-41901505)
chr5 (18-213)||(41889326-41889521)
[»] chr2 (3 HSPs)
chr2 (18-131)||(1037518-1037631)
chr2 (327-373)||(1037275-1037321)
chr2 (44-213)||(32785547-32785716)
[»] chr7 (5 HSPs)
chr7 (20-83)||(7977712-7977775)
chr7 (122-208)||(10169910-10169996)
chr7 (122-208)||(10177435-10177521)
chr7 (135-208)||(10167454-10167527)
chr7 (18-66)||(10614725-10614773)
[»] chr3 (1 HSPs)
chr3 (283-373)||(514339-514430)
[»] chr1 (2 HSPs)
chr1 (327-373)||(19468119-19468165)
chr1 (116-209)||(52082811-52082904)
[»] chr6 (2 HSPs)
chr6 (331-372)||(6432594-6432635)
chr6 (333-373)||(8913683-8913723)
[»] chr8 (1 HSPs)
chr8 (44-140)||(32151456-32151552)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 1528170 - 1527814
Alignment:
Q  18 tcaaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatattccatagcaagagctcaaatctaagagttgtaaattggggaa 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || |||||||||||||||||||||||||||||||    
T  1528170 tcaaatgcctaatcttactacttttccttaaaacttgaccaattccttctgtagatattccatagaaatagctcaaatctaagagttgtaaattggggaa 1528071  T
Q  118 aacagaagcaaacatattgatgtcttcatccctcaaccatgggttgttagctaaacggagagacttcaattgagggtatacatcaaaatccatcaaggtg 217  Q
    ||| ||| |||||||||  |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1528070 aacggaaacaaacatatcaatgtcttcatccctcaagaatgggttgttagctaaacggagagacttcaattgagggtatacatcaaaatccatcaaggta 1527971  T
Q  218 tacgaattctctacgctcatcttcccaatagctgcgtattccattttgacgtcacttagtttagcacagttcttaaggagtgcaaacaaggct-aatgtg 316  Q
    || || |||||||||||||| |||||||||| || |||||||||||||||||||||||||||  |||| |||||||||||||||||||||||| ||||||    
T  1527970 taagagttctctacgctcattttcccaatagttgtgtattccattttgacgtcacttagtttcacacaattcttaaggagtgcaaacaaggctaaatgtg 1527871  T
Q  317 tgaggctatcacatttactaatgtttatagacaacaaatcaccaagaaacaaagaca 373  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  1527870 tgaggctatcacatttactaatgtttatagacaacaaatcactaagaaacgaagaca 1527814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 6006460 - 6006809
Alignment:
Q  18 tcaaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatattccatagcaagagctcaaatctaagagttgtaaattggggaa 117  Q
    ||||||||||||||||||||| |||||||||||||||| ||| |||||| | ||||||    | ||||||||||||||| |||||||||||||||||| |    
T  6006460 tcaaatgtctaatcttactacatttccttaaaacttgagcaacaccttcatcagatatgtactcgcaagagctcaaatccaagagttgtaaattggggca 6006559  T
Q  118 aacagaagcaaacatattgatgtcttcatccctcaaccatgggttgttagctaaacggagagacttcaattgagggtatacatcaaaatccatcaaggtg 217  Q
    ||| |||||||||||||||||||| |||||||||||| |||  |||| | ||||||| |||||||| |||||||||||| || || ||| |||   |||     
T  6006560 aactgaagcaaacatattgatgtcatcatccctcaacgatgtattgtgacctaaacgaagagactttaattgagggtattcaacagaattcataggggta 6006659  T
Q  218 tacgaattctctacgctcatcttcccaatagctgcgtattccattttgacgtcacttagtttagcacagttcttaaggagtgcaaacaaggct-aatgtg 316  Q
    || |||||||||||  || | |||||||||  || |||||||||| |||| ||||| |||||| |||||||| |||||||||||||||||||| ||| ||    
T  6006660 taagaattctctacaatccttttcccaatacatgtgtattccattatgacctcactaagtttatcacagttcctaaggagtgcaaacaaggctaaatttg 6006759  T
Q  317 tgaggctatcacatttactaatgtttatagacaacaaatcaccaagaaac 366  Q
    |||||||||||||||||||||| |||||| ||| ||||||| ||||||||    
T  6006760 tgaggctatcacatttactaatatttataaacaccaaatcagcaagaaac 6006809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 12120109 - 12119929
Alignment:
Q  18 tcaaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatattccatagcaagagctcaaatctaagagttgtaaattgggg-a 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||| |    
T  12120109 tcaaatgtctaatcttactacttttctttaaaacttgaccaataccttcgttagatattgcatagaaagagctcaaatataagagttgtaaattggggga 12120010  T
Q  117 aaacagaagcaaacatattgatgtcttcatccctcaaccatgggttgttagctaaacggagagacttcaattgagggtata 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12120009 aaacagaagcaaacatattgatgtcttcatccctcaaccatgggttgttagctaaacagagagacttcaattgagggtata 12119929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 193 - 373
Target Start/End: Complemental strand, 12119103 - 12118921
Alignment:
Q  193 gtatacatcaaaatccatcaaggtgtacgaattctctacgctcatcttcccaatagctgcgtattccattttgacgtcacttagtttagcacagttctta 292  Q
    |||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  12119103 gtatacatcaaaatccttcaaggtatacgaattctctatgctcatcttcccaatagttgtgtattccattttgacgtcacttagtttagcacagttctta 12119004  T
Q  293 aggagtgcaaacaaggct-aatgtgtga-ggctatcacatttactaatgtttatagacaacaaatcaccaagaaacaaagaca 373  Q
    ||||| | |||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12119003 aggagagaaaacaaggataaatttgtgagggctatcacatttactaatgtttatagacaacaaatcaccaagaaacaaagaca 12118921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 55908385 - 55908339
Alignment:
Q  327 acatttactaatgtttatagacaacaaatcaccaagaaacaaagaca 373  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||||||    
T  55908385 acattcactaaggtttatagacaccaaatcaccaagaaacaaagaca 55908339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 55908695 - 55908582
Alignment:
Q  18 tcaaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatattccatagcaagagctcaaatctaagagttgtaaattggggaa 117  Q
    |||||||||||| ||||| || | |||||| ||||| || ||||||||||| ||||||   || ||| ||||||||||| |  | ||| |||||||||||    
T  55908695 tcaaatgtctaaccttacaacatctccttagaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaa 55908596  T
Q  118 aacagaagcaaaca 131  Q
    ||  ||||||||||    
T  55908595 aatggaagcaaaca 55908582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 1495888 - 1495832
Alignment:
Q  19 caaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatat 75  Q
    ||||||| | ||||||| || | |||||||||| |||||||||||||||| ||||||    
T  1495888 caaatgtgtcatcttacaacatctccttaaaacatgaccaataccttcttcagatat 1495832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 41901505 - 41901310
Alignment:
Q  18 tcaaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatattccatagcaagagctcaaatctaagagttgtaaattggggaa 117  Q
    ||||||||||||| |||| ||   |||||||||||||| |||||||||||| | |||| | | | |||  ||||||||| |  || || |||||||||||    
T  41901505 tcaaatgtctaatgttacaacacatccttaaaacttgaacaataccttcttcaaatatgcgacaacaattgctcaaatcaagcagctgcaaattggggaa 41901406  T
Q  118 aacagaagcaaacatattgatgtcttcatccctcaaccatgggttgttagctaaacggagagacttcaattgagggtatacatcaaaatccatcaa 213  Q
    ||  ||||| |||||  |||||||||||||    ||||| || |||| ||| || || ||| |||| |||||||||||| || |||||| ||||||    
T  41901405 aatggaagcgaacattgtgatgtcttcatcaaataaccacggattgtgagccaatcgaagatactttaattgagggtatgcaacaaaattcatcaa 41901310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 41889521 - 41889326
Alignment:
Q  18 tcaaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatattccatagcaagagctcaaatctaagagttgtaaattggggaa 117  Q
    |||||| |||||| |||| || | ||||||||||||||  ||||||||| | | |||| | | | |||  ||||||||| |  || || ||||| |||||    
T  41889521 tcaaatatctaatgttacaacatatccttaaaacttgagtaataccttcatcaaatatgcgacaacaattgctcaaatcaagtagctgcaaattagggaa 41889422  T
Q  118 aacagaagcaaacatattgatgtcttcatccctcaaccatgggttgttagctaaacggagagacttcaattgagggtatacatcaaaatccatcaa 213  Q
    ||  |||||||||||  |||||||||||||    |||||||| || | ||| ||||| |||  ||| |||||||||||| || |||||||||||||    
T  41889421 aatggaagcaaacattatgatgtcttcatctgataaccatggattttgagccaaacgaagatgctttaattgagggtatgcaacaaaatccatcaa 41889326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 1037631 - 1037518
Alignment:
Q  18 tcaaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatattccatagcaagagctcaaatctaagagttgtaaattggggaa 117  Q
    |||||||||||| ||||| || | |||||||||||| || ||||||||||| ||||||   || ||| ||||||||||| |  | ||| |||||||||||    
T  1037631 tcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaa 1037532  T
Q  118 aacagaagcaaaca 131  Q
    ||  ||||||||||    
T  1037531 aatggaagcaaaca 1037518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 1037321 - 1037275
Alignment:
Q  327 acatttactaatgtttatagacaacaaatcaccaagaaacaaagaca 373  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||||||    
T  1037321 acattcactaaggtttatagacaccaaatcaccaagaaacaaagaca 1037275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 213
Target Start/End: Complemental strand, 32785716 - 32785547
Alignment:
Q  44 cttaaaacttgaccaataccttctttagatattccatagcaagagctcaaatctaagagttgtaaattggggaaaacagaagcaaacatattgatgtctt 143  Q
    ||||||| ||||| ||||||||||| ||||||   ||||||| |||||||||| |  ||||| |||||||  |||| ||||| ||||||  |||||  ||    
T  32785716 cttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattggaaaaaatagaagaaaacatcctgatgcttt 32785617  T
Q  144 catccctcaaccatgggttgttagctaaacggagagacttcaattgagggtatacatcaaaatccatcaa 213  Q
    |||| || |||||    |||  ||| ||| ||||| |||| |||||||||  |||| |||||||||||||    
T  32785616 catctcttaaccaataattgcgagccaaatggagaaactttaattgagggattacaacaaaatccatcaa 32785547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 7977712 - 7977775
Alignment:
Q  20 aaatgtctaatcttactacttttccttaaaacttgaccaataccttctttagatattccatagc 83  Q
    ||||||||||| |||| || | ||||||||||||||||||||||||||| ||| || |||||||    
T  7977712 aaatgtctaatgttacaacatctccttaaaacttgaccaataccttcttcagaaatgccatagc 7977775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 10169996 - 10169910
Alignment:
Q  122 gaagcaaacatattgatgtcttcatccctcaaccatgggttgttagctaaacggagagacttcaattgagggtatacatcaaaatcc 208  Q
    |||| ||||||  |||||| ||||||||| | |||||  |||| ||| |||  ||||||||||||||||||||||||| ||||||||    
T  10169996 gaagaaaacattatgatgtgttcatcccttacccatgtattgtaagccaaatagagagacttcaattgagggtatacaccaaaatcc 10169910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 10177521 - 10177435
Alignment:
Q  122 gaagcaaacatattgatgtcttcatccctcaaccatgggttgttagctaaacggagagacttcaattgagggtatacatcaaaatcc 208  Q
    |||| ||||||  |||||| ||||||||| | |||||  |||| ||| |||  ||||||||||||||||||||||||| ||||||||    
T  10177521 gaagaaaacattatgatgtgttcatcccttacccatgtattgtaagccaaatagagagacttcaattgagggtatacaccaaaatcc 10177435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 10167527 - 10167454
Alignment:
Q  135 tgatgtcttcatccctcaaccatgggttgttagctaaacggagagacttcaattgagggtatacatcaaaatcc 208  Q
    |||||| ||||||||| | |||||  |||| ||| |||  ||||||||||||||||||||||||| ||||||||    
T  10167527 tgatgtgttcatcccttacccatgtattgtaagccaaatagagagacttcaattgagggtatacaccaaaatcc 10167454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 10614725 - 10614773
Alignment:
Q  18 tcaaatgtctaatcttactacttttccttaaaacttgaccaataccttc 66  Q
    ||||||| |||||||||| || | ||||||||||||||| |||||||||    
T  10614725 tcaaatgcctaatcttacaacatatccttaaaacttgacaaataccttc 10614773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 373
Target Start/End: Complemental strand, 514430 - 514339
Alignment:
Q  283 acagttcttaaggagtgcaaacaaggctaa-tgtgtgaggctatcacatttactaatgtttatagacaacaaatcaccaagaaacaaagaca 373  Q
    |||||||||||  ||||||||||||| ||| ||||||||  |   |||||| || | ||||||||||||||||| |||||||||||| ||||    
T  514430 acagttcttaacaagtgcaaacaaggataaatgtgtgagcattgaacatttgctcaagtttatagacaacaaatgaccaagaaacaatgaca 514339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 19468165 - 19468119
Alignment:
Q  327 acatttactaatgtttatagacaacaaatcaccaagaaacaaagaca 373  Q
    ||||| ||||| |||||||||||  ||||||||||||||||||||||    
T  19468165 acattcactaaggtttatagacactaaatcaccaagaaacaaagaca 19468119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 52082811 - 52082904
Alignment:
Q  116 aaaacagaagcaaacatattgatgtcttcatccctcaaccatgggttgttagctaaacggagagacttcaattgagggtatacatcaaaatcca 209  Q
    |||| |||||| ||||| ||||||  ||||| | ||||| |||| |||  ||| ||| |||||||||||| ||||||||||||| |||| ||||    
T  52082811 aaaagagaagccaacattttgatgctttcattcttcaacaatggattgcgagccaaatggagagacttcacttgagggtatacaacaaagtcca 52082904  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 372
Target Start/End: Original strand, 6432594 - 6432635
Alignment:
Q  331 ttactaatgtttatagacaacaaatcaccaagaaacaaagac 372  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||    
T  6432594 ttactaaggtttatagacaccaaatcagcaagaaacaaagac 6432635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 373
Target Start/End: Complemental strand, 8913723 - 8913683
Alignment:
Q  333 actaatgtttatagacaacaaatcaccaagaaacaaagaca 373  Q
    ||||| ||||||||||| ||||| |||||||||||||||||    
T  8913723 actaaggtttatagacaccaaattaccaagaaacaaagaca 8913683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 32151456 - 32151552
Alignment:
Q  44 cttaaaacttgaccaataccttctttagatattccatagcaagagctcaaatctaagagttgtaaattggggaaaacagaagcaaacatattgatgt 140  Q
    ||||||||||||| ||| ||||||| ||||||   || |||| | |||||||| |  ||||| ||||| |||||||  ||||||||||| |||||||    
T  32151456 cttaaaacttgacaaattccttcttcagatatgttatggcaacacctcaaatcaagcagttgcaaattagggaaaatggaagcaaacattttgatgt 32151552  T

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