View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16159_low_15 (Length: 321)
Name: NF16159_low_15
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16159_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 5921746 - 5921863
Alignment:
| Q |
37 |
ttacatataaaaacagtgatttatattatttttgaatgaattacaattgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgca |
136 |
Q |
| |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5921746 |
ttacatataagaacagtggtttatattatttttgaatgaattacaattgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgca |
5921845 |
T |
|
| Q |
137 |
ctatgctacaatcaggga |
154 |
Q |
| |
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|||||||||||||||||| |
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| T |
5921846 |
ctatgctacaatcaggga |
5921863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 203 - 316
Target Start/End: Original strand, 5921912 - 5922025
Alignment:
| Q |
203 |
tgatttgttttgttgtctcattgacttttgagctgtaacagtttcatgctttgatttgttgtggtatgacttttgctcctcgttaattctttattatttc |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5921912 |
tgatttgttttgttgtctcattgacttttgagctgtaacagttccatgctttgatttgttgtggtatgacttttgctcctcattaattctttattatttc |
5922011 |
T |
|
| Q |
303 |
atattaattctcct |
316 |
Q |
| |
|
|||||||||||||| |
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|
| T |
5922012 |
atattaattctcct |
5922025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 3016000 - 3015886
Alignment:
| Q |
40 |
catataaaaacagtgatttatattatttttgaatgaattacaattgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgcacta |
139 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3016000 |
catataagaacagtggtttatattatttttgaatgaattacaattgtgagaataatctctattaatagatagagagtgaagcgagtgcattcatgcacta |
3015901 |
T |
|
| Q |
140 |
tgctacaatcaggga |
154 |
Q |
| |
|
||||||||||||||| |
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|
| T |
3015900 |
tgctacaatcaggga |
3015886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 3020194 - 3020081
Alignment:
| Q |
203 |
tgatttgttttgttgtctcattgacttttgagctgtaacagtttcatgctttgatttgttgtggtatgacttttgctcctcgttaattctttattatttc |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3020194 |
tgatttgttttgttgtctcattgacttttgagctgtaacagttccatactttgatttgttgtggtatgacttttgctcctcattaattctttattatttc |
3020095 |
T |
|
| Q |
303 |
atattaattctcct |
316 |
Q |
| |
|
|||||||||||||| |
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|
| T |
3020094 |
atattaattctcct |
3020081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 3020355 - 3020247
Alignment:
| Q |
42 |
tataaaaacagtgatttatattatttttgaatgaattacaattgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgcactatg |
141 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3020355 |
tataagaacagtggtttatattatttttgaatgaattacaattgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgcactatg |
3020256 |
T |
|
| Q |
142 |
ctacaatca |
150 |
Q |
| |
|
||||||||| |
|
|
| T |
3020255 |
ctacaatca |
3020247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 3015837 - 3015733
Alignment:
| Q |
203 |
tgatttgttttgttgtctcattgacttttgagctgtaacagtttcatgctttgatttgttgtggtatgacttttgctcctcgttaattctttattatttc |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3015837 |
tgatttgttttgttgtctcattgacttttgagctgtaacagttccatgctttgatttgttgtggtatgacttttgctcctcattaattctttattatttc |
3015738 |
T |
|
| Q |
303 |
atatt |
307 |
Q |
| |
|
||||| |
|
|
| T |
3015737 |
atatt |
3015733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 42832621 - 42832733
Alignment:
| Q |
42 |
tataaaaacagtgatttatattatttttgaatgaattacaattgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgcactatg |
141 |
Q |
| |
|
||||| |||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42832621 |
tataagaacattggtttatattatttttaaatgaattacaattgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgcactatg |
42832720 |
T |
|
| Q |
142 |
ctacaatcaggga |
154 |
Q |
| |
|
||| ||||||||| |
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|
| T |
42832721 |
ctaaaatcaggga |
42832733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 203 - 316
Target Start/End: Original strand, 42832781 - 42832889
Alignment:
| Q |
203 |
tgatttgttttgttgtctcattgacttttgagctgtaacagtttcatgctttgatttgttgtggtatgacttttgctcctcgttaattctttattatttc |
302 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
42832781 |
tgatttgttttgttgtc-----gacttttgagctgtaacagttccatgctttaatttgttgtggtatgacttttgctcctcattaattctttattatttc |
42832875 |
T |
|
| Q |
303 |
atattaattctcct |
316 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
42832876 |
atattaattctcct |
42832889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 2663127 - 2663014
Alignment:
| Q |
203 |
tgatttgttttgttgtctcattgacttttgagctgtaacagtttcatgctttgatttgttgtggtatgacttttgctcctcgttaattctttattatttc |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
2663127 |
tgatttgttttgttgtctcattgacttttgagctgtaacagttccatgctttgatttgttgtggtatgacttttgctactcattaattctttattatttc |
2663028 |
T |
|
| Q |
303 |
atattaattctcct |
316 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2663027 |
atattaattctcct |
2663014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 203 - 314
Target Start/End: Complemental strand, 2658740 - 2658629
Alignment:
| Q |
203 |
tgatttgttttgttgtctcattgacttttgagctgtaacagtttcatgctttgatttgttgtggtatgacttttgctcctcgttaattctttattatttc |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
2658740 |
tgatttgttttgttgtctcattgacttttgagctgtaacagttccatgctttgatttgttgtggtatgacttttgctactcattaattctttattatttc |
2658641 |
T |
|
| Q |
303 |
atattaattctc |
314 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2658640 |
atattaattctc |
2658629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 2663288 - 2663176
Alignment:
| Q |
42 |
tataaaaacagtgatttatattatttttgaatgaattacaattgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgcactatg |
141 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2663288 |
tataagaacagtggtttatattatttttgaatgaattacaaatgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgcactatg |
2663189 |
T |
|
| Q |
142 |
ctacaatcaggga |
154 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
2663188 |
ctacaataaggga |
2663176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 2658846 - 2658792
Alignment:
| Q |
97 |
tctattaatagatagagagtgaaccgagtgcattcatgcactatgctacaatcag |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2658846 |
tctattaatagatagagagtgaaccgagtgcattcatgcactatgctacaatcag |
2658792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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