View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16159_low_16 (Length: 312)

Name: NF16159_low_16
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16159_low_16
NF16159_low_16
[»] chr4 (40 HSPs)
chr4 (18-296)||(35900282-35900561)
chr4 (40-182)||(24929369-24929510)
chr4 (38-128)||(54325088-54325179)
chr4 (40-113)||(49219083-49219156)
chr4 (38-110)||(51630058-51630130)
chr4 (50-128)||(4071811-4071889)
chr4 (38-105)||(55870392-55870459)
chr4 (38-112)||(24160546-24160620)
chr4 (210-268)||(36219294-36219352)
chr4 (33-107)||(49085939-49086013)
chr4 (52-113)||(27623579-27623640)
chr4 (38-98)||(6978760-6978820)
chr4 (50-106)||(11917510-11917566)
chr4 (38-98)||(18630639-18630699)
chr4 (53-113)||(30338658-30338718)
chr4 (38-113)||(6364093-6364168)
chr4 (43-113)||(8422895-8422963)
chr4 (38-113)||(24160934-24161009)
chr4 (38-97)||(24443998-24444057)
chr4 (38-125)||(55372393-55372479)
chr4 (38-112)||(10192229-10192303)
chr4 (38-112)||(46796963-46797037)
chr4 (38-113)||(53626718-53626795)
chr4 (38-111)||(17884014-17884087)
chr4 (40-113)||(24193529-24193602)
chr4 (45-94)||(25434518-25434567)
chr4 (39-96)||(29194455-29194512)
chr4 (33-98)||(30207617-30207681)
chr4 (75-112)||(31851399-31851436)
chr4 (56-113)||(40865754-40865810)
chr4 (38-111)||(52735068-52735141)
chr4 (38-113)||(437483-437559)
chr4 (62-94)||(5219575-5219607)
chr4 (55-107)||(20936070-20936122)
chr4 (53-113)||(21593078-21593137)
chr4 (39-107)||(23459578-23459646)
chr4 (39-95)||(25885821-25885877)
chr4 (73-125)||(36048731-36048783)
chr4 (44-112)||(42321936-42322004)
chr4 (65-113)||(47970262-47970310)
[»] chr3 (39 HSPs)
chr3 (38-113)||(25183039-25183114)
chr3 (38-112)||(37689435-37689509)
chr3 (38-177)||(43116479-43116617)
chr3 (55-128)||(49586984-49587057)
chr3 (38-113)||(14145856-14145931)
chr3 (38-113)||(24235734-24235809)
chr3 (38-128)||(38462209-38462300)
chr3 (55-113)||(1395615-1395673)
chr3 (38-112)||(10101527-10101601)
chr3 (38-112)||(10212452-10212526)
chr3 (38-110)||(23530235-23530308)
chr3 (38-95)||(33405218-33405275)
chr3 (74-111)||(49465750-49465787)
chr3 (38-114)||(24887334-24887410)
chr3 (45-113)||(28779300-28779368)
chr3 (38-113)||(22232770-22232845)
chr3 (62-113)||(31364845-31364896)
chr3 (42-97)||(32555036-32555091)
chr3 (38-113)||(40122804-40122878)
chr3 (75-113)||(2128339-2128377)
chr3 (63-113)||(3757992-3758042)
chr3 (38-112)||(10357378-10357452)
chr3 (62-112)||(15304422-15304472)
chr3 (75-113)||(36189510-36189548)
chr3 (55-113)||(41028919-41028977)
chr3 (63-113)||(52413197-52413247)
chr3 (63-108)||(6233290-6233335)
chr3 (39-127)||(12923377-12923466)
chr3 (52-113)||(20192671-20192732)
chr3 (80-113)||(25964386-25964419)
chr3 (40-97)||(27792832-27792889)
chr3 (38-103)||(37788814-37788879)
chr3 (77-125)||(45236685-45236734)
chr3 (57-113)||(905040-905096)
chr3 (81-113)||(30669064-30669096)
chr3 (38-113)||(36646433-36646508)
chr3 (57-113)||(42809245-42809301)
chr3 (41-113)||(44061077-44061149)
chr3 (43-107)||(45432995-45433059)
[»] chr6 (25 HSPs)
chr6 (38-111)||(1402942-1403015)
chr6 (38-113)||(2514646-2514721)
chr6 (38-111)||(2027457-2027530)
chr6 (38-98)||(11340676-11340736)
chr6 (75-128)||(8349752-8349806)
chr6 (39-124)||(2117336-2117421)
chr6 (40-113)||(10452413-10452486)
chr6 (36-114)||(2735012-2735090)
chr6 (38-112)||(9093607-9093681)
chr6 (39-113)||(22742310-22742384)
chr6 (52-109)||(3785765-3785822)
chr6 (39-111)||(4247113-4247185)
chr6 (45-113)||(11363426-11363494)
chr6 (38-129)||(33259743-33259835)
chr6 (38-113)||(281899-281974)
chr6 (38-112)||(4006659-4006733)
chr6 (40-106)||(28660813-28660879)
chr6 (39-113)||(29274281-29274355)
chr6 (80-113)||(20370843-20370876)
chr6 (75-127)||(33911369-33911422)
chr6 (52-111)||(1497926-1497986)
chr6 (38-86)||(7485119-7485167)
chr6 (53-113)||(21959672-21959732)
chr6 (42-94)||(27595622-27595674)
chr6 (53-113)||(30537012-30537072)
[»] chr2 (32 HSPs)
chr2 (38-109)||(18962089-18962160)
chr2 (38-113)||(17952752-17952827)
chr2 (45-113)||(25609740-25609808)
chr2 (50-110)||(31740022-31740082)
chr2 (38-113)||(10143116-10143191)
chr2 (38-97)||(11513858-11513917)
chr2 (38-97)||(37292398-37292457)
chr2 (75-113)||(5998790-5998828)
chr2 (53-113)||(1939397-1939458)
chr2 (38-95)||(33942112-33942169)
chr2 (40-97)||(43199374-43199431)
chr2 (50-113)||(3423831-3423894)
chr2 (38-93)||(5043611-5043666)
chr2 (78-113)||(5045248-5045283)
chr2 (75-125)||(7825183-7825234)
chr2 (54-113)||(28902021-28902080)
chr2 (38-113)||(39983287-39983361)
chr2 (57-111)||(3458603-3458657)
chr2 (75-113)||(4026761-4026799)
chr2 (43-113)||(5133716-5133786)
chr2 (39-113)||(23143030-23143104)
chr2 (39-113)||(23554820-23554894)
chr2 (40-94)||(35539686-35539740)
chr2 (40-113)||(3102637-3102710)
chr2 (38-95)||(42592301-42592358)
chr2 (57-128)||(43808504-43808576)
chr2 (79-127)||(44606180-44606229)
chr2 (42-98)||(3673766-3673822)
chr2 (38-98)||(6988074-6988134)
chr2 (42-110)||(9878737-9878805)
chr2 (38-98)||(14666507-14666567)
chr2 (80-112)||(32821754-32821786)
[»] chr5 (25 HSPs)
chr5 (50-129)||(35135725-35135805)
chr5 (38-113)||(12407712-12407787)
chr5 (52-128)||(4991008-4991085)
chr5 (39-95)||(8158353-8158409)
chr5 (38-114)||(14295449-14295525)
chr5 (39-111)||(36539692-36539764)
chr5 (38-98)||(39823172-39823232)
chr5 (38-113)||(18704087-18704161)
chr5 (39-113)||(9202800-9202874)
chr5 (40-109)||(4855646-4855715)
chr5 (78-113)||(11615452-11615487)
chr5 (38-113)||(26516344-26516419)
chr5 (62-113)||(37063149-37063200)
chr5 (38-113)||(38047906-38047981)
chr5 (63-113)||(7096203-7096253)
chr5 (50-103)||(583836-583889)
chr5 (39-112)||(9703292-9703365)
chr5 (40-113)||(32059642-32059714)
chr5 (67-112)||(38104944-38104989)
chr5 (53-98)||(39750102-39750147)
chr5 (75-112)||(42500313-42500350)
chr5 (38-94)||(1130931-1130987)
chr5 (75-111)||(10363696-10363732)
chr5 (81-113)||(10391297-10391329)
chr5 (38-98)||(15003565-15003625)
[»] chr1 (48 HSPs)
chr1 (36-113)||(1730836-1730912)
chr1 (38-113)||(1393070-1393145)
chr1 (39-97)||(52286638-52286696)
chr1 (38-134)||(5421971-5422067)
chr1 (75-167)||(9777773-9777865)
chr1 (38-98)||(28467358-28467418)
chr1 (38-113)||(6074418-6074493)
chr1 (42-111)||(29007771-29007840)
chr1 (62-111)||(30815710-30815759)
chr1 (39-108)||(36070199-36070268)
chr1 (40-113)||(38578471-38578544)
chr1 (50-98)||(15360853-15360901)
chr1 (36-112)||(17830099-17830174)
chr1 (42-98)||(29128353-29128409)
chr1 (38-94)||(45205031-45205087)
chr1 (54-113)||(4200173-4200232)
chr1 (38-113)||(5756737-5756812)
chr1 (38-97)||(27738231-27738290)
chr1 (39-98)||(30371107-30371166)
chr1 (38-93)||(33204439-33204494)
chr1 (40-95)||(37272639-37272694)
chr1 (38-113)||(37842406-37842481)
chr1 (38-93)||(48830127-48830182)
chr1 (38-113)||(49517014-49517089)
chr1 (63-113)||(6976892-6976942)
chr1 (40-82)||(9778057-9778099)
chr1 (38-96)||(10581128-10581186)
chr1 (39-93)||(15581218-15581272)
chr1 (51-113)||(45990122-45990184)
chr1 (75-113)||(46252770-46252808)
chr1 (83-128)||(46504313-46504359)
chr1 (38-103)||(4363683-4363748)
chr1 (76-113)||(8852804-8852841)
chr1 (38-95)||(9656612-9656669)
chr1 (38-107)||(10586423-10586492)
chr1 (41-113)||(17422992-17423065)
chr1 (39-112)||(33527199-33527272)
chr1 (55-112)||(41516148-41516205)
chr1 (53-98)||(44936656-44936701)
chr1 (64-96)||(625530-625562)
chr1 (57-113)||(870989-871045)
chr1 (53-113)||(4256108-4256168)
chr1 (77-109)||(15581064-15581096)
chr1 (41-113)||(16322793-16322865)
chr1 (53-113)||(17420147-17420207)
chr1 (67-111)||(30191937-30191981)
chr1 (53-113)||(45999354-45999414)
chr1 (41-113)||(49557085-49557157)
[»] scaffold0549 (2 HSPs)
scaffold0549 (38-98)||(1775-1835)
scaffold0549 (38-98)||(3865-3925)
[»] chr7 (23 HSPs)
chr7 (41-113)||(49060484-49060556)
chr7 (38-128)||(47004015-47004106)
chr7 (38-127)||(27481345-27481435)
chr7 (38-113)||(1417208-1417283)
chr7 (38-113)||(5006560-5006635)
chr7 (36-106)||(6630551-6630621)
chr7 (79-128)||(8445214-8445264)
chr7 (38-127)||(28634979-28635069)
chr7 (38-108)||(40689037-40689107)
chr7 (40-113)||(39551601-39551674)
chr7 (38-98)||(9527141-9527201)
chr7 (55-111)||(26935618-26935674)
chr7 (38-113)||(17989074-17989149)
chr7 (38-113)||(44241804-44241878)
chr7 (43-114)||(45813236-45813307)
chr7 (75-113)||(28613622-28613660)
chr7 (38-96)||(31002722-31002780)
chr7 (75-113)||(43152990-43153028)
chr7 (40-98)||(44151533-44151591)
chr7 (39-112)||(5628618-5628691)
chr7 (40-113)||(7623082-7623155)
chr7 (78-125)||(30133980-30134028)
chr7 (50-114)||(40687590-40687654)
[»] chr8 (29 HSPs)
chr8 (38-113)||(29973025-29973100)
chr8 (37-113)||(42597345-42597421)
chr8 (38-113)||(4558742-4558817)
chr8 (66-113)||(26215440-26215487)
chr8 (43-109)||(11056723-11056789)
chr8 (38-96)||(12224950-12225008)
chr8 (40-113)||(1470909-1470982)
chr8 (53-127)||(6918245-6918320)
chr8 (38-97)||(35869797-35869856)
chr8 (53-104)||(42237488-42237539)
chr8 (38-108)||(27728072-27728142)
chr8 (67-113)||(31315533-31315579)
chr8 (38-96)||(34770853-34770911)
chr8 (43-112)||(1058130-1058199)
chr8 (38-107)||(24558803-24558872)
chr8 (40-113)||(38561670-38561743)
chr8 (77-113)||(1664327-1664363)
chr8 (77-128)||(1666973-1667025)
chr8 (77-113)||(1892301-1892337)
chr8 (50-98)||(3945233-3945281)
chr8 (38-90)||(6864510-6864562)
chr8 (42-98)||(7714201-7714257)
chr8 (53-113)||(8908994-8909054)
chr8 (43-98)||(34173158-34173214)
chr8 (53-113)||(34788493-34788553)
chr8 (45-97)||(35453681-35453733)
chr8 (38-94)||(39551260-39551316)
chr8 (39-110)||(42764213-42764285)
chr8 (62-98)||(44168517-44168553)
[»] scaffold0060 (1 HSPs)
scaffold0060 (79-128)||(63377-63427)
[»] scaffold0590 (1 HSPs)
scaffold0590 (53-113)||(1140-1200)
[»] scaffold0275 (1 HSPs)
scaffold0275 (53-113)||(2775-2835)
[»] scaffold0428 (1 HSPs)
scaffold0428 (38-111)||(3850-3923)
[»] scaffold0024 (1 HSPs)
scaffold0024 (40-113)||(27520-27593)
[»] scaffold0199 (1 HSPs)
scaffold0199 (77-113)||(6768-6804)
[»] scaffold0103 (1 HSPs)
scaffold0103 (53-113)||(51512-51572)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 35900282 - 35900561
Alignment:
Q  18 tttccattaacttgcagg-ttgcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttataaca 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  35900282 tttccattaacttgcaggattgcttatgaaaataacttatagctcctatgaaaatggattaactttaatttatcttttgttagaaaaatagcttataaca 35900381  T
Q  117 aacacttatatgtgataagaatttatgttataaaccggaaattaaattgttaatccaaacagaacccatatatgtaggacttgtgtcttagcttattttt 216  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  35900382 aacacttatatgtgataagaatttatgctataaaccggaaattaaattgtttatccaaacagaacccatatatgtaggacttgtgtcttagctttttttt 35900481  T
Q  217 tattccttattaatattttcgttgttactaattaaccacattccaaatatcagaactacgtggtaaaataccgtggaaat 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  35900482 tattccttattaatattttcgttgttactaattaaccacattccaaatatcagaactacgtggtaaaagaccatggaaat 35900561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 182
Target Start/End: Complemental strand, 24929510 - 24929369
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata-acaaacacttatatgtgataagaat 138  Q
    ||||||||| |||||||||||  |||||||| || |  ||||||||||||||||||||| | |||||| | ||| | ||||| |||||  ||||||||      
T  24929510 ttatgaaaacaacttatagcttttatgaaaacagttagactttattttatcttttgttatagaaatagttcatacaaaaacaattata--tgataagaga 24929413  T
Q  139 ttatgttataaaccggaaattaaattgttaatccaaacagaacc 182  Q
    |||||||||||||    |||||| ||||| ||||||||||||||    
T  24929412 ttatgttataaacactcaattaagttgtttatccaaacagaacc 24929369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 54325088 - 54325179
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata-acaaacacttatatg 128  Q
    |||| |||||||| ||||||||| ||||||||| || || ||||||||||||||||||| | | |||||| ||||| |||| ||||||||||    
T  54325088 gcttttgaaaatagcttatagcttatatgaaaacagtttgactttattttatcttttgtaatagaaatagtttatacacaagcacttatatg 54325179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 49219156 - 49219083
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||| ||||||||||| |||||||||||  || |||||||||||| |||||||| | ||||| ||||||    
T  49219156 ttatgaaaacaacttatagcttatatgaaaataatttgactttattttatattttgttatagaaataacttata 49219083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 51630130 - 51630058
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagctt 110  Q
    ||||||||||||| ||||||||| |||| |||| |  ||||||||||||||||||||| || | |||||||||    
T  51630130 gcttatgaaaatagcttatagcttatatcaaaacaatttaactttattttatcttttgctatataaatagctt 51630058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 4071889 - 4071811
Alignment:
Q  50 aacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata-acaaacacttatatg 128  Q
    ||||||||||| |||||||||||  || ||||||||||||||||||||| | |||||| ||||| | |||||||||||||    
T  4071889 aacttatagcttatatgaaaataatttgactttattttatcttttgttatagaaatag-ttatatataaacacttatatg 4071811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 55870392 - 55870459
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaat 105  Q
    ||||||||||| ||||||||||| || |||||| || || ||||||||| ||||||||||| ||||||    
T  55870392 gcttatgaaaacaacttatagcttatgtgaaaacagtttgactttatttgatcttttgttataaaaat 55870459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 24160546 - 24160620
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    ||||||||||| ||||||||||| | |||||||||| || | ||||| ||||||||||||| | ||| |||||||    
T  24160546 gcttatgaaaacaacttatagcttacatgaaaatagtttgaatttatattatcttttgttatagaaaaagcttat 24160620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 36219352 - 36219294
Alignment:
Q  210 tattttttattccttattaatattttcgttgttactaattaaccacattccaaatatca 268  Q
    |||||||||||| ||||||  ||||||| ||||||||||||| |||| |||||||||||    
T  36219352 tattttttattctttattaccattttcgatgttactaattaaacacactccaaatatca 36219294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 49086013 - 49085939
Alignment:
Q  33 aggttgcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatag 107  Q
    |||| ||||||||||| |||||||| ||  ||||||||||| || || |||||||||||||||||| | ||||||    
T  49086013 aggtagcttatgaaaacaacttataacttgtatgaaaatagtttgacattattttatcttttgttatataaatag 49085939  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 27623640 - 27623579
Alignment:
Q  52 cttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||| |||| ||||||| || ||||||||||||||||||||| | ||||| ||||||    
T  27623640 cttatagcttatattaaaatagtttgactttattttatcttttgttatacaaatatcttata 27623579  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 6978760 - 6978820
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    |||||||||||||  || ||| | |||||||||||| |||||| |||||||||||||||||    
T  6978760 gcttatgaaaatagtttgtagtttatatgaaaatagtttaactatattttatcttttgtta 6978820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 11917566 - 11917510
Alignment:
Q  50 aacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaata 106  Q
    ||||||||| | |||||||||||  || ||||||||||||||||||||| |||||||    
T  11917566 aacttataggttatatgaaaataatttgactttattttatcttttgttacaaaaata 11917510  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 18630699 - 18630639
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    |||| |||||| ||||||||||| |||||||||   ||| |||||||||||||||||||||    
T  18630699 gcttgtgaaaacaacttatagcttatatgaaaaccaattgactttattttatcttttgtta 18630639  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 30338658 - 30338718
Alignment:
Q  53 ttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||| ||||||||| || ||||||||||| |||||||||||| | |||||| |||||    
T  30338658 ttatagcttatatgaaaacagtttaactttattctatcttttgttatagaaatagtttata 30338718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 6364168 - 6364093
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||||  ||||||||| || |||| | |  || ||||||||||||||||||||| | ||||||||||||    
T  6364168 gcttatgaaaattgcttatagcttatgtgaacagaatttcactttattttatcttttgttatagaaatagcttata 6364093  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 8422895 - 8422963
Alignment:
Q  43 tgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||| ||||||||||| ||||||||| |   | ||||||||||||||||| ||| ||||||||||||||    
T  8422895 tgaaaacaacttatagcttatatgaaaacaa--tgactttattttatctttttttataaaaatagcttata 8422963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 24161009 - 24160934
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||| | ||||||||||  | |||||||||  ||||||| |||||||| ||||||| | ||||||||||||    
T  24161009 gcttatgaacacaacttatagcctacatgaaaataatttaacttgattttatcctttgttatagaaatagcttata 24160934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 24444057 - 24443998
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtt 97  Q
    ||||||||||| ||||||||||| |||||||||| | || | |||||||||| |||||||    
T  24444057 gcttatgaaaacaacttatagcttatatgaaaattgtttgaatttattttatattttgtt 24443998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 55372393 - 55372479
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttataacaaacacttat 125  Q
    |||||||||||  ||||||||||||||||| ||||| || |||||||||||  |||| ||   |||||||||||| | ||||||||||    
T  55372393 gcttatgaaaactacttatagctcatatgataatagtttgactttatttta-attttttttttaaaatagcttattataaacacttat 55372479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 10192303 - 10192229
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    |||| |||||| |||||||| || ||||||||| |  || |||||||| |||||||||||| |||||||| ||||    
T  10192303 gcttttgaaaacaacttataacttatatgaaaacaatttgactttattctatcttttgttataaaaatagtttat 10192229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 46797037 - 46796963
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    ||||||||||| |||||||| || ||||| ||| | ||| | ||||||||||| |||||||  ||||||||||||    
T  46797037 gcttatgaaaacaacttataacttatatggaaacatattgaatttattttatcgtttgttatgaaaatagcttat 46796963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 53626795 - 53626718
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgt--tagaaaaatagcttata 113  Q
    ||||||||||| | ||||||||| ||||||||| |  || | |||||||||||||||||  |||||||||| ||||||    
T  53626795 gcttatgaaaacagcttatagcttatatgaaaacattttgaatttattttatcttttgttatagaaaaataacttata 53626718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 17884087 - 17884014
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagctta 111  Q
    ||||||||||| |||| ||| || |||  |||| |  |||||||||||||||||||||||| | ||||||||||    
T  17884087 gcttatgaaaacaactgataacttatacaaaaacaatttaactttattttatcttttgttatagaaatagctta 17884014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 24193602 - 24193529
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||| ||| |||||||| || |||||||||||| |||||| | |||||| |||||||  ||||||| ||||||    
T  24193602 ttatggaaacaacttataacttatatgaaaatagtttaactctgttttatattttgttgtaaaaataacttata 24193529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 25434518 - 25434567
Alignment:
Q  45 aaaataacttatagctcatatgaaaatagattaactttattttatctttt 94  Q
    |||| ||||||||||| ||||||||| | ||| |||||||||||||||||    
T  25434518 aaaacaacttatagcttatatgaaaacatattgactttattttatctttt 25434567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 29194455 - 29194512
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgt 96  Q
    |||| |||||||| ||||| || |||||||||||| || | |||||||||||||||||    
T  29194455 cttaagaaaataagttataacttatatgaaaatagtttgattttattttatcttttgt 29194512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 30207617 - 30207681
Alignment:
Q  33 aggttgcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    |||| ||||||||||| ||||||||||| ||||||||| || || | |||||||||| ||||||||    
T  30207617 aggtagcttatgaaaacaacttatagcttatatgaaaacagtttga-tttattttattttttgtta 30207681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 31851436 - 31851399
Alignment:
Q  75 ttaactttattttatcttttgttagaaaaatagcttat 112  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  31851436 ttaactttattttatcatttgttataaaaatagcttat 31851399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 40865810 - 40865754
Alignment:
Q  56 tagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||| |||||||||||  || |||||||| ||||||||||||||||||||| |||||    
T  40865810 tagcttatatgaaaatat-ttgactttattctatcttttgttagaaaaatagtttata 40865754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 52735141 - 52735068
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagctta 111  Q
    ||||| ||||| ||| |||| || |||||||| ||  || ||||||||||||||||||||| | ||||||||||    
T  52735141 gcttacgaaaacaacatataacttatatgaaagtaatttgactttattttatcttttgttacagaaatagctta 52735068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 437483 - 437559
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta-gaaaaatagcttata 113  Q
    ||||||||||| |||||| | || ||||||| | |  ||||||||||||||||||||| ||  ||||||||||||||    
T  437483 gcttatgaaaacaacttaaaacttatatgaacacaatttaactttattttatcttttgctataaaaaatagcttata 437559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 5219575 - 5219607
Alignment:
Q  62 atatgaaaatagattaactttattttatctttt 94  Q
    |||||||||||| ||||||||||||||||||||    
T  5219575 atatgaaaatagtttaactttattttatctttt 5219607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 20936070 - 20936122
Alignment:
Q  55 atagctcatatgaaaatagattaactttattttatcttttgttagaaaaatag 107  Q
    |||||| | |||||||||| || ||||||||||||||||||||| | ||||||    
T  20936070 atagcttacatgaaaatagtttgactttattttatcttttgttatagaaatag 20936122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 21593078 - 21593137
Alignment:
Q  53 ttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||| |||||||||||| || |||||||||||||||| |||| | |||||| |||||    
T  21593078 ttatagcttatatgaaaatag-ttgactttattttatctttagttatagaaatagtttata 21593137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 23459646 - 23459578
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatag 107  Q
    |||||||||| | ||||||||| ||| ||||| |  ||||||| ||||||||||||| || ||||||||    
T  23459646 cttatgaaaacagcttatagcttataagaaaacaacttaacttcattttatcttttgctataaaaatag 23459578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 25885877 - 25885821
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttg 95  Q
    |||||||||| ||||||||||| | | ||||| |  |||||||||||||||||||||    
T  25885877 cttatgaaaacaacttatagcttacacgaaaacaatttaactttattttatcttttg 25885821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 36048783 - 36048731
Alignment:
Q  73 gattaactttattttatcttttgttagaaaaatagcttataacaaacacttat 125  Q
    |||| |||||| |||||||||||||| | ||||||||||||| || |||||||    
T  36048783 gattgactttaatttatcttttgttatagaaatagcttataataagcacttat 36048731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 42321936 - 42322004
Alignment:
Q  44 gaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    ||||| ||||||||  | ||||||||| |  || ||||||||||||| ||||||| |||||||||||||    
T  42321936 gaaaacaacttataatttatatgaaaacaatttgactttattttatcatttgttataaaaatagcttat 42322004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 47970310 - 47970262
Alignment:
Q  65 tgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||| || |||| |||||||||||||||| | ||||||||||||    
T  47970310 tgaaaatagtttgacttcattttatcttttgttatagaaatagcttata 47970262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 25183039 - 25183114
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| | |||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| |||||    
T  25183039 gcttatgaaaacagcttatagctcatatgaaaatagcttaactttatttaatcttttgttataaaaatagtttata 25183114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 37689435 - 37689509
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    |||||||||||||  |||||||| |||||||||||  ||||||||| |||||||||||||| |||||||||||||    
T  37689435 gcttatgaaaatagtttatagcttatatgaaaataatttaactttactttatcttttgttataaaaatagcttat 37689509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 177
Target Start/End: Original strand, 43116479 - 43116617
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata-acaaacacttatatgtgataaga 136  Q
    |||||||||||  |||||||||| |||||||||| | || | || |||||||||||||||| | |||||||||| | | |||||||| ||  ||||||      
T  43116479 gcttatgaaaacgacttatagcttatatgaaaattgtttgatttgattttatcttttgttatagaaatagcttacacataaacacttgta--tgataaac 43116576  T
Q  137 atttatgttataaaccggaaattaaattgttaatccaaaca 177  Q
    ||||||| |||||||   ||||||| ||||| |||||||||    
T  43116577 atttatgctataaacactaaattaagttgtttatccaaaca 43116617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 49586984 - 49587057
Alignment:
Q  55 atagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttataacaaacacttatatg 128  Q
    |||||| ||||||||| || || ||||||||||||||||||||| | ||||||||||||  || ||||||||||    
T  49586984 atagcttatatgaaaacagtttgactttattttatcttttgttatagaaatagcttatagtaagcacttatatg 49587057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 14145931 - 14145856
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||||||||||||||  ||| ||||| |  |||||||||||||||||| ||||| |||| | |||||||    
T  14145931 gcttatgaaaataacttatagcatatacgaaaacaatttaactttattttatcttctgttataaaacttgcttata 14145856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 24235734 - 24235809
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| ||||||||||| ||||  |||||| || ||||||| ||||||||||||| | ||||| ||||||    
T  24235734 gcttatgaaaacaacttatagcttatattcaaatagtttgactttatattatcttttgttatagaaataacttata 24235809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 38462300 - 38462209
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttat-aacaaacacttatatg 128  Q
    ||||||||||| |  |||||||  ||||||||| || || |||||||||||||||||| || | ||||||||||| || |||||||||||||    
T  38462300 gcttatgaaaacagtttatagcatatatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatg 38462209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 1395673 - 1395615
Alignment:
Q  55 atagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||| |||||||||||  || ||||||||||||||||||||| | ||||||||||||    
T  1395673 atagcttatatgaaaataatttgactttattttatcttttgttatagaaatagcttata 1395615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 10101527 - 10101601
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    ||||||||||| ||||| || || ||||||||| |  |||||||||||||||||||||||| | ||||| |||||    
T  10101527 gcttatgaaaacaacttttatcttatatgaaaacaatttaactttattttatcttttgttatagaaataacttat 10101601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 10212452 - 10212526
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    ||||||||||| ||||| || || ||||||||| |  |||||||||||||||||||||||| | ||||| |||||    
T  10212452 gcttatgaaaacaacttttatcttatatgaaaacaatttaactttattttatcttttgttatagaaataacttat 10212526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 23530235 - 23530308
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaa-tagattaactttattttatcttttgttagaaaaatagctt 110  Q
    ||||||||||| ||||||||  | ||||||||| ||  || |||||||||||||||||||||||||| ||||||    
T  23530235 gcttatgaaaacaacttatactttatatgaaaaataatttgactttattttatcttttgttagaaaactagctt 23530308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 33405218 - 33405275
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttg 95  Q
    ||||||||||| | ||||||||| ||||||||| | ||||||||||||||| ||||||    
T  33405218 gcttatgaaaacagcttatagcttatatgaaaacaaattaactttattttaccttttg 33405275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 49465750 - 49465787
Alignment:
Q  74 attaactttattttatcttttgttagaaaaatagctta 111  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  49465750 attaactttattttatcttttgttataaaaatagctta 49465787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 24887334 - 24887410
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttataa 114  Q
    ||||||||||| | ||| ||||| ||||||| | || || |||||||||||||| |||||| | |||||||||||||    
T  24887334 gcttatgaaaacagcttttagcttatatgaatacagtttgactttattttatctattgttatagaaatagcttataa 24887410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 28779368 - 28779300
Alignment:
Q  45 aaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||| ||||||||||| |||||||||||| || ||||||||| ||||  ||||| ||||| ||||||||    
T  28779368 aaaacaacttatagcttatatgaaaatagtttgactttatttcatctgatgttataaaaacagcttata 28779300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 22232845 - 22232770
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||||| ||||   || ||||||||| || || ||||||||||||| ||||||| | ||||||||||||    
T  22232845 gcttatgaaaatagcttacgacttatatgaaaacagtttgactttattttatcatttgttatataaatagcttata 22232770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 31364896 - 31364845
Alignment:
Q  62 atatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||  | |||||||||||||| ||||||||| ||||||||||||||    
T  31364896 atatgaaaactgcttaactttattttaccttttgttataaaaatagcttata 31364845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 32555036 - 32555091
Alignment:
Q  42 atgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtt 97  Q
    ||||||| ||||||||||| ||| |||||||  || ||||||||||||||||||||    
T  32555036 atgaaaacaacttatagcttataggaaaataatttgactttattttatcttttgtt 32555091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 40122804 - 40122878
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||| |||| |||||||||||  |||||||| || || |||||||||||||||||||||   ||||||||||||    
T  40122804 gcttataaaaacaacttatagctt-tatgaaaacagtttgactttattttatcttttgttattgaaatagcttata 40122878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 2128339 - 2128377
Alignment:
Q  75 ttaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  2128339 ttaactttattttatcttttgttatagaaatagcttata 2128377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 3758042 - 3757992
Alignment:
Q  63 tatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||| || || |||||||||||| |||||||| ||||||||||||||    
T  3758042 tatgaaaagagtttgactttattttatattttgttacaaaaatagcttata 3757992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 10357452 - 10357378
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    ||||||||||| ||||| || || ||||||||| |  ||||| |||||||||||||||||| | ||||| |||||    
T  10357452 gcttatgaaaacaacttgtatcttatatgaaaaaaatttaacattattttatcttttgttatagaaataacttat 10357378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 15304422 - 15304472
Alignment:
Q  62 atatgaaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    ||||||||| |  |||||||||||||||||||||||| | |||||||||||    
T  15304422 atatgaaaacaatttaactttattttatcttttgttatagaaatagcttat 15304472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 36189548 - 36189510
Alignment:
Q  75 ttaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  36189548 ttaactttattttatcttttgtaagagaaatagcttata 36189510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 41028919 - 41028977
Alignment:
Q  55 atagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||| || |||||| ||||| |||||||||| |||||||||| | ||||||||||||    
T  41028919 atagcttatttgaaaacagattgactttattttttcttttgttatagaaatagcttata 41028977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 52413197 - 52413247
Alignment:
Q  63 tatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| || | |||||| |||||||||||| ||||||||||||||    
T  52413197 tatgaaaatagtttcattttattctatcttttgttataaaaatagcttata 52413247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 6233290 - 6233335
Alignment:
Q  63 tatgaaaatagattaactttattttatcttttgttagaaaaatagc 108  Q
    ||||| ||||| |||||||||||||||||||||||| | |||||||    
T  6233290 tatgacaatagtttaactttattttatcttttgttaaagaaatagc 6233335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 12923377 - 12923466
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata-acaaacacttatat 127  Q
    |||| ||||| ||||||||||| ||| ||||  || || ||||||||||||||||| ||| |  ||||||||||| |||| |||||||||    
T  12923377 cttaggaaaacaacttatagcttataagaaagcagtttgactttattttatcttttattacagcaatagcttatacacaagcacttatat 12923466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 20192671 - 20192732
Alignment:
Q  52 cttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||| | |||||||||  | || ||||||||||||||||||||| | ||||||||||||    
T  20192671 cttatagattatatgaaaactgtttgactttattttatcttttgttatataaatagcttata 20192732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 25964419 - 25964386
Alignment:
Q  80 tttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||||||||||| ||||||||||||||    
T  25964419 tttattttatcttttgttataaaaatagcttata 25964386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 27792889 - 27792832
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtt 97  Q
    ||||||||| |||||  |||| |||||||||||| || || |||||||||||||||||    
T  27792889 ttatgaaaacaacttgcagcttatatgaaaatagtttgaccttattttatcttttgtt 27792832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 37788879 - 37788814
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaa 103  Q
    ||||||||||| ||||||||| | ||| |||||||  |  ||||||||||||||||||||| ||||    
T  37788879 gcttatgaaaacaacttatagattatacgaaaataattggactttattttatcttttgttataaaa 37788814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 45236734 - 45236685
Alignment:
Q  77 aactttattttatcttttgttagaaaaatagcttata-acaaacacttat 125  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||||||||    
T  45236734 aactttactttatctttcgttataaaaatagcttatacacaaacacttat 45236685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 905040 - 905096
Alignment:
Q  57 agctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||| ||||| ||| | ||| ||||||||||||||||||||| | ||||||||||||    
T  905040 agcttatatgcaaacaaattgactttattttatcttttgttatagaaatagcttata 905096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 30669064 - 30669096
Alignment:
Q  81 ttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||||||||| ||||||||||||||    
T  30669064 ttattttatcttttgttataaaaatagcttata 30669096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 36646433 - 36646508
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagatta-actttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| || ||||| || ||||||||| | |||| ||||||||||||||||||| | | ||||||||||||    
T  36646433 gcttatgaaaacaagttataacttatatgaaaaca-attatactttattttatcttttgtcatagaaatagcttata 36646508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 42809301 - 42809245
Alignment:
Q  57 agctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||| ||||||||| |  |||||| ||||||||||||||||| | ||||||||||||    
T  42809301 agcttatatgaaaacaatttaactatattttatcttttgttatagaaatagcttata 42809245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 44061077 - 44061149
Alignment:
Q  41 tatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||| ||||||||||| |||  |||| |  ||||| ||||||||||||||| || | ||||||||||||    
T  44061077 tatgaaaacaacttatagcttatagaaaaacaatttaaccttattttatcttttgctatagaaatagcttata 44061149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 45432995 - 45433059
Alignment:
Q  43 tgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatag 107  Q
    |||||| || |||||||||||||||||| |  ||||||| |||||||||||| ||| | ||||||    
T  45432995 tgaaaacaatttatagctcatatgaaaacaatttaacttcattttatcttttcttatagaaatag 45433059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 1403015 - 1402942
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagctta 111  Q
    ||||||||||| || |||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  1403015 gcttatgaaaacaatttatagcttatatgaaaatagtttaactttattttatcttttgttatagaaatagctta 1402942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 2514721 - 2514646
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||| ||| | ||||||||||||    
T  2514721 gcttatgaaaataacttatagctcatataaaattagtttgactttattttatcttttattatagaaatagcttata 2514646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 2027457 - 2027530
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagctta 111  Q
    |||||||| || | ||||||| | |||||||||||| || ||||||||||||||||||||| ||||||||||||    
T  2027457 gcttatgagaacagcttataggttatatgaaaatagtttgactttattttatcttttgttataaaaatagctta 2027530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 11340676 - 11340736
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    ||||||||||  ||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  11340676 gcttatgaaaccaacttatagcgtatatgaaaataaattaactttattttatcttttgtta 11340736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 8349752 - 8349806
Alignment:
Q  75 ttaactttattttatcttttgttagaaaaatagcttata-acaaacacttatatg 128  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||    
T  8349752 ttaactttattttatcttttgttagagaaatagtttatacacaaacacttatatg 8349806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 2117421 - 2117336
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttataacaaacactta 124  Q
    |||||||||| ||||||||| | |||||||||||| || ||||| ||||||| ||||| | | ||||||| |||||||||| ||||    
T  2117421 cttatgaaaacaacttatagattatatgaaaatagtttgactttgttttatcctttgtcatagaaatagcgtataacaaacgctta 2117336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 10452413 - 10452486
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||| ||| ||||||||||| |||||||||||| || | |||||||||| |||||||| | ||||||||||||    
T  10452413 ttatggaaacaacttatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagcttata 10452486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 2735090 - 2735012
Alignment:
Q  36 ttgcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttataa 114  Q
    ||||||||||||| | ||||||| | |||  ||||||  |||||||||||||||||||||||| | | |||||||||||    
T  2735090 ttgcttatgaaaacagcttatagattatacaaaaataatttaactttattttatcttttgttatagacatagcttataa 2735012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 9093607 - 9093681
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    ||||||||||| | ||||||||| ||| ||||| |  ||||||||||||||||||||| || | |||||||||||    
T  9093607 gcttatgaaaacagcttatagcttatacgaaaacaatttaactttattttatcttttgatatagaaatagcttat 9093681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 22742384 - 22742310
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||| |||||| ||||||||| ||||||||| |  || ||||||||||||| ||||||| | ||||||||||||    
T  22742384 cttataaaaatagcttatagcttatatgaaaacaatttgactttattttatcctttgttatacaaatagcttata 22742310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 3785765 - 3785822
Alignment:
Q  52 cttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagct 109  Q
    ||||||||| ||| ||||| || ||||||||||||||||||||| ||| |||||||||    
T  3785765 cttatagcttatacgaaaacagtttaactttattttatcttttgctagcaaaatagct 3785822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 4247113 - 4247185
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagctta 111  Q
    |||||||||| | |||||| || ||||||||| |||  |||| ||||||||||||||||| | ||||||||||    
T  4247113 cttatgaaaacagcttataacttatatgaaaacagaccaactctattttatcttttgttatagaaatagctta 4247185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 11363426 - 11363494
Alignment:
Q  45 aaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||| |||||||| || | |||||||||  |||||||||||||||||||| ||  ||||||||||||||    
T  11363426 aaaacaacttataacttacatgaaaataatttaactttattttatcttttcttttaaaaatagcttata 11363494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 33259835 - 33259743
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata-acaaacacttatatgt 129  Q
    ||||||||||||| ||||||||  ||| ||||| ||  | |||| | |||||||||||||| |||||||||||||| | || |||||||||||    
T  33259835 gcttatgaaaatagcttatagcatataggaaaacagtatgacttcaatttatcttttgttataaaaatagcttatacataagcacttatatgt 33259743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 281899 - 281974
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||| | | ||||||||| ||||||||| |  || ||||||||||||||||||||| |  |||||||||||    
T  281899 gcttatgaacacagcttatagcttatatgaaaacaagttgactttattttatcttttgttataggaatagcttata 281974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 4006733 - 4006659
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    ||||||||||| ||||||||||| |||| |||| |  || ||||||||||||| ||||||| | ||||| |||||    
T  4006733 gcttatgaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttatagaaatatcttat 4006659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 28660813 - 28660879
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaata 106  Q
    ||||||||| || |||||  | |||||||||||  ||||||||||||||||| |||||| |||||||    
T  28660813 ttatgaaaacaatttataatttatatgaaaataatttaactttattttatctattgttataaaaata 28660879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 29274281 - 29274355
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||| |  |||||||| ||||||||| |  || |||||||||||||||||| || | ||||||||||||    
T  29274281 cttatgaaaacagtttatagcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttata 29274355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 20370876 - 20370843
Alignment:
Q  80 tttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||||||||||| ||||||||||||||    
T  20370876 tttattttatcttttgttataaaaatagcttata 20370843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 33911369 - 33911422
Alignment:
Q  75 ttaactttattttatcttttgttagaaaaatagcttata-acaaacacttatat 127  Q
    |||||||||||| ||||||||||| |||||||| ||||| | ||||||||||||    
T  33911369 ttaactttatttgatcttttgttataaaaatagattatacataaacacttatat 33911422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 1497986 - 1497926
Alignment:
Q  52 cttatagctcatatgaaaatagattaactttattttatctttt-gttagaaaaatagctta 111  Q
    |||||| |||||||||||| || || ||||||||||| ||||| |||| ||||||||||||    
T  1497986 cttataactcatatgaaaacagtttgactttattttaccttttggttaaaaaaatagctta 1497926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 7485119 - 7485167
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattt 86  Q
    ||||||||||| ||||||||||| ||||||||| |  ||||||||||||    
T  7485119 gcttatgaaaacaacttatagcttatatgaaaaaaatttaactttattt 7485167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 21959732 - 21959672
Alignment:
Q  53 ttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||| ||||| ||| | ||| |||||||||||||||||||||   ||||||||||||    
T  21959732 ttatagcttatatgcaaacaaattgactttattttatcttttgttatggaaatagcttata 21959672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 27595622 - 27595674
Alignment:
Q  42 atgaaaataacttatagctcatatgaaaatagattaactttattttatctttt 94  Q
    |||||| ||||||| |||| |||||||||||  || |||||||||||||||||    
T  27595622 atgaaattaacttacagcttatatgaaaataatttgactttattttatctttt 27595674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 30537012 - 30537072
Alignment:
Q  53 ttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||| | ||||||||| | ||||| ||||||||||||||||||| | ||||||| ||||    
T  30537012 ttatagattatatgaaaacaaattaattttattttatcttttgttatagaaatagcatata 30537072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 18962089 - 18962160
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagct 109  Q
    |||||||||||||  |||||||| ||||||||| || |||||||||||||||||||||||| ||||||||||    
T  18962089 gcttatgaaaatagtttatagcttatatgaaaacagtttaactttattttatcttttgttataaaaatagct 18962160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 17952752 - 17952827
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| | ||| ||||| |||||||||||| || ||||||||||||||||||||| | ||||||||||||    
T  17952752 gcttatgaaaacatcttgtagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttata 17952827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 25609808 - 25609740
Alignment:
Q  45 aaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||| ||||||||||| ||| ||||||| ||| ||||||||||||||||| ||| | ||||||||||||    
T  25609808 aaaacaacttatagcttatacgaaaataaattgactttattttatcttttcttatagaaatagcttata 25609740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 31740022 - 31740082
Alignment:
Q  50 aacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagctt 110  Q
    ||||||||||| |||||||||||| || |||||||||||||||| |||| | |||||||||    
T  31740022 aacttatagcttatatgaaaatagtttgactttattttatctttagttatagaaatagctt 31740082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 10143191 - 10143116
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| ||||||||||| |||| |||| || || |||| |||||||||||||||| | ||||| ||||||    
T  10143191 gcttatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataacttata 10143116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 11513917 - 11513858
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtt 97  Q
    ||||||||||| ||||||||||| ||||||||| |  || ||||||||||||||||||||    
T  11513917 gcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgtt 11513858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 37292398 - 37292457
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtt 97  Q
    ||||| ||||| |||| |||||| |||||||||||| || ||||||||||||||||||||    
T  37292398 gcttaagaaaacaactaatagcttatatgaaaatagttttactttattttatcttttgtt 37292457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 5998790 - 5998828
Alignment:
Q  75 ttaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  5998790 ttaactttattttatcttttgttataaaaatagcttata 5998828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 1939397 - 1939458
Alignment:
Q  53 ttatagctca-tatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||| | ||||| ||||||    
T  1939397 ttatagctcaatatgaaaatagtttcactttattttatcttttgttatagaaataacttata 1939458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 33942169 - 33942112
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttg 95  Q
    ||||||||||| ||||||||||| | ||||||| || || ||||||||||||||||||    
T  33942169 gcttatgaaaacaacttatagcttacatgaaaacagtttgactttattttatcttttg 33942112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 43199431 - 43199374
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtt 97  Q
    ||||||||| ||||||||||| ||| ||| |||  |||||||||||||||||||||||    
T  43199431 ttatgaaaacaacttatagcttatacgaagataatttaactttattttatcttttgtt 43199374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 3423831 - 3423894
Alignment:
Q  50 aacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||| | |||||||||||  || |||||||||||||||||| || ||||||| ||||||    
T  3423831 aacttataggttatatgaaaataatttgactttattttatcttttggtacaaaaataacttata 3423894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 5043611 - 5043666
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttt 93  Q
    ||||||||||| ||||| ||||| ||||||||| || || ||||||||||||||||    
T  5043611 gcttatgaaaacaacttctagcttatatgaaaacagtttgactttattttatcttt 5043666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 113
Target Start/End: Original strand, 5045248 - 5045283
Alignment:
Q  78 actttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||||||||||||| ||||||||||||||    
T  5045248 actttattttatcttttgttataaaaatagcttata 5045283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 7825234 - 7825183
Alignment:
Q  75 ttaactttattttatcttttgttagaaaaatagcttata-acaaacacttat 125  Q
    ||||||||| |||||||||||||| |||||||||||||| | ||||||||||    
T  7825234 ttaactttactttatcttttgttataaaaatagcttatacagaaacacttat 7825183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 28902080 - 28902021
Alignment:
Q  54 tatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||| ||||||||| || |||| ||||||||| ||| ||||| ||||||||||||||    
T  28902080 tatagcttatatgaaaacagtttaattttattttaacttatgttataaaaatagcttata 28902021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 39983361 - 39983287
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| ||||||||||| ||||||||||   || | ||||||||| | ||||||| ||||||||||||||    
T  39983361 gcttatgaaaacaacttatagcttatatgaaaattattttattttatttta-cctttgttacaaaaatagcttata 39983287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 3458657 - 3458603
Alignment:
Q  57 agctcatatgaaaatagattaactttattttatcttttgttagaaaaatagctta 111  Q
    |||| ||||||||| || || ||||||||||||||||||||| ||||||| ||||    
T  3458657 agcttatatgaaaaaagtttgactttattttatcttttgttataaaaataactta 3458603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 4026799 - 4026761
Alignment:
Q  75 ttaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  4026799 ttaactttattttatcttttgctataaaaatagcttata 4026761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 5133786 - 5133716
Alignment:
Q  43 tgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||| | |||||| || |||| |||| || ||| |||||||||||||||||||| | ||||||||||||    
T  5133786 tgaaaacagcttatatcttatataaaaacagtttatctttattttatcttttgttatagaaatagcttata 5133716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 23143030 - 23143104
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||| |||| |||||| ||| ||||| |  || | || |||||||||||||||| ||||||||||||||    
T  23143030 cttatgaaaacaactaatagcttataagaaaacaatttgatttgattttatcttttgttacaaaaatagcttata 23143104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 23554820 - 23554894
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||| |||| |||||| ||| ||||| |  || | || |||||||||||||||| ||||||||||||||    
T  23554820 cttatgaaaacaactaatagcttataagaaaacaatttgatttgattttatcttttgttacaaaaatagcttata 23554894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 35539740 - 35539686
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatctttt 94  Q
    ||||||||||| |||||| || |||||||||||| || | |||||||||||||||    
T  35539740 ttatgaaaatagcttataacttatatgaaaatagtttgattttattttatctttt 35539686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 3102710 - 3102637
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||| | || |||| | |||| ||||||| || |||||||||||| ||||| || ||||||||||||||    
T  3102710 ttatgaaaacagctaatagattatataaaaatagtttgactttattttatattttgctataaaaatagcttata 3102637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 42592358 - 42592301
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttg 95  Q
    ||||||||||| | ||||||||| ||||||||| |  ||||||| |||||||||||||    
T  42592358 gcttatgaaaacagcttatagcttatatgaaaacaagttaacttaattttatcttttg 42592301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 43808576 - 43808504
Alignment:
Q  57 agctcatatgaaaatagattaactttattttatcttttgtta-gaaaaatagcttata-acaaacacttatatg 128  Q
    |||| |||||||||||| |||||||||||||||  |||||||  |||||||||||||| | |||||||||||||    
T  43808576 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatg 43808504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 44606180 - 44606229
Alignment:
Q  79 ctttattttatcttttgttagaaaaatagcttata-acaaacacttatat 127  Q
    ||||||||||||||||||||  ||||||||||||| | ||||||||||||    
T  44606180 ctttattttatcttttgttatgaaaatagcttatacataaacacttatat 44606229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 3673822 - 3673766
Alignment:
Q  42 atgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    ||||||| |||||||| || ||||||||| |  ||||||||||||||| ||||||||    
T  3673822 atgaaaaaaacttataacttatatgaaaacaatttaactttattttatattttgtta 3673766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 6988134 - 6988074
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    ||||||||||| |||||||| ||  || |||||||  || |||||||||||||||||||||    
T  6988134 gcttatgaaaacaacttataactagtaagaaaataatttgactttattttatcttttgtta 6988074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 9878737 - 9878805
Alignment:
Q  42 atgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagctt 110  Q
    ||||||| ||||||||||  || | ||||||| || | ||||||||||||||||||| | |||||||||    
T  9878737 atgaaaacaacttatagcatatgtaaaaatagtttgagtttattttatcttttgttatagaaatagctt 9878805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 14666567 - 14666507
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    |||| |||||| |||||||| || ||||||||  || || |||||||||||||||||||||    
T  14666567 gcttgtgaaaacaacttataacttatatgaaatcagtttgactttattttatcttttgtta 14666507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 32821786 - 32821754
Alignment:
Q  80 tttattttatcttttgttagaaaaatagcttat 112  Q
    ||||||||||||||||||| |||||||||||||    
T  32821786 tttattttatcttttgttataaaaatagcttat 32821754  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 35135725 - 35135805
Alignment:
Q  50 aacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata-acaaacacttatatgt 129  Q
    ||||||||||| |||||||||||| || ||||||||||||||||||||| | ||||| |||||| | ||||||||||||||    
T  35135725 aacttatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataaacacttatatgt 35135805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 12407712 - 12407787
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||| ||||||| || | ||||||| ||||| ||||||||||||||||||||| | ||||||||||||    
T  12407712 gcttatgaaaatgacttataacttacatgaaaacagatttactttattttatcttttgttatagaaatagcttata 12407787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 4991008 - 4991085
Alignment:
Q  52 cttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata-acaaacacttatatg 128  Q
    |||||| || ||||||||||| ||| |  |||| ||||||||||||| |||||||||||||| |||||||||||||||    
T  4991008 cttataacttatatgaaaataaattgatcttatgttatcttttgttataaaaatagcttatacacaaacacttatatg 4991085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 8158353 - 8158409
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttg 95  Q
    ||||||||||||| ||| |||| |||||||||||  |||||||||||||||||||||    
T  8158353 cttatgaaaataatttaaagcttatatgaaaataatttaactttattttatcttttg 8158409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 14295525 - 14295449
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttataa 114  Q
    ||||| ||||| | ||||||||| ||||||||| || || ||||||||||||||||||||| | |||||||| ||||    
T  14295525 gcttacgaaaacagcttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaatagctaataa 14295449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 36539764 - 36539692
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagctta 111  Q
    ||||| |||| ||||||||||| ||||||||| || || |||||||||||||||||| || | ||||||||||    
T  36539764 cttataaaaacaacttatagcttatatgaaaacaggttgactttattttatcttttgataaacaaatagctta 36539692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 39823172 - 39823232
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    ||||||||||| ||||| ||||| |||||||| ||| || |||||||||||||||||||||    
T  39823172 gcttatgaaaacaacttgtagcttatatgaaagtagtttgactttattttatcttttgtta 39823232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 18704087 - 18704161
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| ||||||||||| |||| ||||||| || |||||| |||||||||||||| | ||||| ||||||    
T  18704087 gcttatgaaaacaacttatagcttatataaaaatagcttgacttta-tttatcttttgttatagaaataacttata 18704161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 9202800 - 9202874
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||| | ||||| ||| ||||||||| |  ||||||||||||||||||||| || | ||||||||||||    
T  9202800 cttatgaaaacagcttattgcttatatgaaaacaatttaactttattttatcttttgctacagaaatagcttata 9202874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 4855715 - 4855646
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagct 109  Q
    ||||||||| |||||||| || |||||| || |  ||||||||||||||| |||||||| ||||||||||    
T  4855715 ttatgaaaacaacttataacttatatgataacaatttaactttattttattttttgttataaaaatagct 4855646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 11615487 - 11615452
Alignment:
Q  78 actttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||||||||||||| ||||||||||||||    
T  11615487 actttattttatcttttgttataaaaatagcttata 11615452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 26516419 - 26516344
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| |  ||||| || |||||||| ||| || |||||||||||||| |||||||| || |||||||||    
T  26516419 gcttatgaaaacagtttataacttatatgaaagtagtttgactttattttatctattgttagagaactagcttata 26516344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 37063149 - 37063200
Alignment:
Q  62 atatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||| || ||||||||||||||||||||| | |||||| |||||    
T  37063149 atatgaaaatagtttgactttattttatcttttgttatagaaatagtttata 37063200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 38047906 - 38047981
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| | | |||||   |||||||||||  || ||||||||||||||||||||||| | ||||||||||    
T  38047906 gcttatgaaaacagcatatagtatatatgaaaataatttgactttattttatcttttgttagagatatagcttata 38047981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 7096203 - 7096253
Alignment:
Q  63 tatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||| | || ||||||||||||||||||||| | ||||||||||||    
T  7096203 tatgaaaatggtttgactttattttatcttttgttatagaaatagcttata 7096253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 583836 - 583889
Alignment:
Q  50 aacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaa 103  Q
    ||||||||||| ||||||||| || || ||||||||||||||| ||||| ||||    
T  583836 aacttatagcttatatgaaaacagtttgactttattttatcttctgttataaaa 583889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 9703292 - 9703365
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    |||||||||| ||||| ||||| ||||||||  || || |||||||||||||| |||||| | ||||| |||||    
T  9703292 cttatgaaaacaacttgtagcttatatgaaatgagtttgactttattttatctcttgttacagaaataacttat 9703365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 32059642 - 32059714
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||| | ||||||||| ||||||||| || || ||||||||||||| || |||| ||||| ||||||||    
T  32059642 ttatgaaaacagcttatagcttatatgaaaacagtttgactttattttatc-ttagttacaaaaacagcttata 32059714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 38104944 - 38104989
Alignment:
Q  67 aaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    ||||||| |||||||||||||||||| |||||  ||||||||||||    
T  38104944 aaaatagtttaactttattttatcttgtgttacgaaaatagcttat 38104989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 39750147 - 39750102
Alignment:
Q  53 ttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    ||||| || |||||||||||| || |||||||||||||||||||||    
T  39750147 ttataacttatatgaaaatagtttgactttattttatcttttgtta 39750102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 42500313 - 42500350
Alignment:
Q  75 ttaactttattttatcttttgttagaaaaatagcttat 112  Q
    ||||||||||||||||||||| || |||||||||||||    
T  42500313 ttaactttattttatcttttgatataaaaatagcttat 42500350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 1130987 - 1130931
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatctttt 94  Q
    |||||| ||| |||||||||||  |||| |||| |||||||||||||||||| ||||    
T  1130987 gcttataaaattaacttatagcctatataaaaacagattaactttattttatatttt 1130931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 10363732 - 10363696
Alignment:
Q  75 ttaactttattttatcttttgttagaaaaatagctta 111  Q
    |||||||||||||||||||||||| | ||||||||||    
T  10363732 ttaactttattttatcttttgttatagaaatagctta 10363696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 10391329 - 10391297
Alignment:
Q  81 ttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||||||||| ||||||||||||||    
T  10391329 ttattttatcttttgttataaaaatagcttata 10391297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 15003565 - 15003625
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    |||||||||||  |||||||||| ||||||| | || || | |||||||||||||||||||    
T  15003565 gcttatgaaaaccacttatagcttatatgaagagagtttgattttattttatcttttgtta 15003625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 1730912 - 1730836
Alignment:
Q  36 ttgcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||||||||||||| || | |||||| ||| || |||||||||||||||| |||| ||||||||||||||    
T  1730912 ttgcttatgaaaataacttataacttacatgaaa-tagtttgactttattttatctttggttaaaaaaatagcttata 1730836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 1393070 - 1393145
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||| ||||||| || | ||||||| ||||| ||||||||||| ||||||||| | ||||||||||||    
T  1393070 gcttatgaaaatgacttataacttacatgaaaacagatttactttattttaacttttgttatataaatagcttata 1393145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 52286696 - 52286638
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtt 97  Q
    ||||||||||||  |||||||| |||||||||| | |||||||||||||||||||||||    
T  52286696 cttatgaaaatagtttatagcttatatgaaaattgtttaactttattttatcttttgtt 52286638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 5421971 - 5422067
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttataacaaacacttatatgtgataa 134  Q
    |||||| |||| ||||||||||| ||| ||||| |  || ||| ||||||||||||||| |   ||||||||||||| || ||||||||||||||||    
T  5421971 gcttatcaaaacaacttatagcttataagaaaacaatttgactatattttatcttttgtcatggaaatagcttataataagcacttatatgtgataa 5422067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 9777865 - 9777773
Alignment:
Q  75 ttaactttattttatcttttgttagaaaaatagcttataacaaacacttatatgtgataagaatttatgttataaaccggaaattaaattgtt 167  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||   |||| ||  |||||||||||||||||||| | | |||||||| ||||    
T  9777865 ttaattttattttatcttttgttataaaaataacttataataagggcttacataagataagaatttatgttataagctgcaaattaaaatgtt 9777773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 28467358 - 28467418
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    ||||||||||| ||||| ||||| |||||||||||  || |||||||||||||||||||||    
T  28467358 gcttatgaaaacaacttgtagcttatatgaaaataatttgactttattttatcttttgtta 28467418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 6074493 - 6074418
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||| ||||| |||| |||||| ||||||||| || |||||||||| | ||||||||||| | ||||||||||||    
T  6074493 gcttaagaaaacaactcatagcttatatgaaaacagtttaactttatatcatcttttgttatagaaatagcttata 6074418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 29007771 - 29007840
Alignment:
Q  42 atgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagctta 111  Q
    ||||||| ||||||||||| |||||||||||| || |||||| ||| |||||||||| | ||||| ||||    
T  29007771 atgaaaacaacttatagcttatatgaaaatagtttgactttaatttttcttttgttatagaaataactta 29007840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 30815710 - 30815759
Alignment:
Q  62 atatgaaaatagattaactttattttatcttttgttagaaaaatagctta 111  Q
    |||||||||||| |||||||||||||||||||||||| | ||| ||||||    
T  30815710 atatgaaaatagtttaactttattttatcttttgttatagaaaaagctta 30815759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 36070268 - 36070199
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagc 108  Q
    |||||||||| ||||||||||| ||  ||| | |  |||||||||||||||||||||||| |||||||||    
T  36070268 cttatgaaaacaacttatagcttatccgaagacaatttaactttattttatcttttgttataaaaatagc 36070199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 38578544 - 38578471
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||| ||| ||||||||||| |||  ||||||  |||||||||| ||||||||||||| | ||||||||||||    
T  38578544 ttatgtaaacaacttatagcttatacaaaaataatttaactttatgttatcttttgttatagaaatagcttata 38578471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 15360901 - 15360853
Alignment:
Q  50 aacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    ||||||||||| ||||||||| || || |||||||||||||||||||||    
T  15360901 aacttatagcttatatgaaaacagtttgactttattttatcttttgtta 15360853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 17830174 - 17830099
Alignment:
Q  36 ttgcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    |||| |||||||||||||| ||||  |||  ||||||| |||||||||||||||| |||| || |||||||||||||    
T  17830174 ttgcatatgaaaataacttgtagcatatacaaaaatag-ttaactttattttatcatttgctataaaaatagcttat 17830099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 29128353 - 29128409
Alignment:
Q  42 atgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    ||||||| || |||||||| | | ||||||| |||||||||||||||||||||||||    
T  29128353 atgaaaacaatttatagcttaaacgaaaataaattaactttattttatcttttgtta 29128409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 45205087 - 45205031
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatctttt 94  Q
    ||||||||||| ||||| ||||| ||||| |||||| || |||||||||||||||||    
T  45205087 gcttatgaaaacaacttctagcttatatggaaatagtttgactttattttatctttt 45205031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 4200232 - 4200173
Alignment:
Q  54 tatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||| ||||||||| |  || ||||||||||||||||||||| ||||||| ||||||    
T  4200232 tatagcttatatgaaaacaacttgactttattttatcttttgttataaaaataacttata 4200173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 5756737 - 5756812
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||| ||||| ||||||||  | ||||||||| || |||||||||| | ||||||||||| | ||||||||||||    
T  5756737 gcttacgaaaacaacttataatttatatgaaaacagtttaactttatatcatcttttgttatagaaatagcttata 5756812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 27738231 - 27738290
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtt 97  Q
    ||||||||||| || |||||||| ||||||||| |  || ||||||||||||||||||||    
T  27738231 gcttatgaaaacaaattatagcttatatgaaaacaatttgactttattttatcttttgtt 27738290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 30371166 - 30371107
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    |||||||||| ||||||||||| ||||||||| |  || | |||||||||||||||||||    
T  30371166 cttatgaaaacaacttatagcttatatgaaaacaatttgagtttattttatcttttgtta 30371107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 33204439 - 33204494
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttt 93  Q
    ||||||||||| | |||| |||| ||| ||||||| ||||||||||||||||||||    
T  33204439 gcttatgaaaacagcttacagcttatacgaaaataaattaactttattttatcttt 33204494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 37272639 - 37272694
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttg 95  Q
    ||||||||| | ||||||||| ||||||||| ||||| ||||||||||| ||||||    
T  37272639 ttatgaaaacagcttatagcttatatgaaaacagattgactttattttaccttttg 37272694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 37842406 - 37842481
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| ||||||||||| ||  ||| | || |||||||||||| |||||||| || | ||||||||||||    
T  37842406 gcttatgaaaacaacttatagcttattcgaacacagtttaactttatttcatcttttgctatagaaatagcttata 37842481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 48830127 - 48830182
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttt 93  Q
    ||||||||||| |  |||||||| |||||||||||| || ||||||||||||||||    
T  48830127 gcttatgaaaacagtttatagcttatatgaaaatagtttgactttattttatcttt 48830182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 49517089 - 49517014
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| | ||||||||| | ||||||| |  || ||||||||||||||||||||| | ||||| ||||||    
T  49517089 gcttatgaaaacagcttatagcttaaatgaaaacaatttgactttattttatcttttgttatagaaataacttata 49517014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 6976942 - 6976892
Alignment:
Q  63 tatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| |||||||||| ||||||||||||| | ||||| ||||||    
T  6976942 tatgaaaatagtttaactttatcttatcttttgttatagaaatatcttata 6976892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 9778099 - 9778057
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaacttt 82  Q
    |||||||||||||||||||||||||  |||||| |||||||||    
T  9778099 ttatgaaaataacttatagctcatacaaaaatatattaacttt 9778057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 10581128 - 10581186
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgt 96  Q
    ||||||||||| ||||||||||| | ||||||| || || ||||||||||||| |||||    
T  10581128 gcttatgaaaacaacttatagcttaaatgaaaaaagtttgactttattttatcctttgt 10581186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 15581272 - 15581218
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttt 93  Q
    ||||| |||| | ||||||||| |||| |||||| ||||||||||||||||||||    
T  15581272 cttataaaaaaagcttatagcttatataaaaatatattaactttattttatcttt 15581218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 45990122 - 45990184
Alignment:
Q  51 acttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||| ||||||||| |  || |||||||||||||||||| || ||||||||| ||||    
T  45990122 acttatagcttatatgaaaacaattttactttattttatcttttgatataaaaatagcatata 45990184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 46252770 - 46252808
Alignment:
Q  75 ttaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  46252770 ttaactttattttatcttttgttataaaaatagcctata 46252808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 46504313 - 46504359
Alignment:
Q  83 attttatcttttgttagaaaaatagcttata-acaaacacttatatg 128  Q
    |||||||||||||||| |||||||| ||||| |||||||||||||||    
T  46504313 attttatcttttgttataaaaatagtttatagacaaacacttatatg 46504359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 4363683 - 4363748
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaa 103  Q
    |||||||||||||  |||||||| ||||||||| || || || |||||| ||||||||||| ||||    
T  4363683 gcttatgaaaataggttatagcttatatgaaaacagtttgacattatttaatcttttgttataaaa 4363748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 8852841 - 8852804
Alignment:
Q  76 taactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  8852841 taactttattttatcttttgttgtaaaaatagcttata 8852804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 9656669 - 9656612
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttg 95  Q
    ||||||||| | | ||||||||| |||||||||||  ||||||||||||||| |||||    
T  9656669 gcttatgaacacagcttatagcttatatgaaaataatttaactttattttattttttg 9656612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 10586423 - 10586492
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatag 107  Q
    ||||||||||||  ||||||| ||||||||||| |  || ||||||||||||||||| ||| || |||||    
T  10586423 gcttatgaaaatggcttatagttcatatgaaaacaattttactttattttatcttttcttataataatag 10586492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 17422992 - 17423065
Alignment:
Q  41 tatgaaaataacttatagctcatatgaaaatagattaactttattttatc-ttttgttagaaaaatagcttata 113  Q
    |||||||| ||||||||||| ||||||||  || || ||||||||||||| |||||||| | ||| ||||||||    
T  17422992 tatgaaaacaacttatagcttatatgaaatcagcttgactttattttatcgttttgttatagaaaaagcttata 17423065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 33527199 - 33527272
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    |||||||||| | ||||||| | ||||||||| || || ||| ||||||||||||||||  | |||||||||||    
T  33527199 cttatgaaaacagcttatagattatatgaaaacagtttgactgtattttatcttttgttttagaaatagcttat 33527272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 41516148 - 41516205
Alignment:
Q  55 atagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    |||||| |||||||||||| || ||||| ||||||||||||| | ||| |||||||||    
T  41516148 atagcttatatgaaaatagtttgactttcttttatcttttgtcaaaaacatagcttat 41516205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 44936656 - 44936701
Alignment:
Q  53 ttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    |||||||| |||||||||||| || ||||||| |||||||||||||    
T  44936656 ttatagcttatatgaaaatagtttgactttatcttatcttttgtta 44936701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 625562 - 625530
Alignment:
Q  64 atgaaaatagattaactttattttatcttttgt 96  Q
    ||||||||||||| |||||||||||||||||||    
T  625562 atgaaaatagattgactttattttatcttttgt 625530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 871045 - 870989
Alignment:
Q  57 agctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||| ||||||||| | ||| |||| |||||||||||||||| |||||||| |||||    
T  871045 agcttatatgaaaaaaaattgacttaattttatcttttgttataaaaatagtttata 870989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 4256108 - 4256168
Alignment:
Q  53 ttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||| ||| |||||||  ||||||||||| |||||||||||  | ||||||||||||    
T  4256108 ttatagcttatacgaaaataatttaactttattgtatcttttgttgtagaaatagcttata 4256168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 15581096 - 15581064
Alignment:
Q  77 aactttattttatcttttgttagaaaaatagct 109  Q
    |||||||||||||||||||||| ||||||||||    
T  15581096 aactttattttatcttttgttataaaaatagct 15581064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 16322865 - 16322793
Alignment:
Q  41 tatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||| | |||||| ||  ||||||||||| || ||| |||||||||||||| || |||||||| |||||    
T  16322865 tatgaaaacagcttataacttctatgaaaatagtttgactatattttatcttttgatataaaaatagtttata 16322793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 17420207 - 17420147
Alignment:
Q  53 ttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||| |||||||||| | |  ||||||||||||||||| ||| |||||||| |||||    
T  17420207 ttatagcttatatgaaaattgttcgactttattttatcttttcttataaaaatagtttata 17420147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 30191981 - 30191937
Alignment:
Q  67 aaaatagattaactttattttatcttttgttagaaaaatagctta 111  Q
    |||||| |||||||||||||||| ||||| || ||||||||||||    
T  30191981 aaaataaattaactttattttattttttgctataaaaatagctta 30191937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 45999354 - 45999414
Alignment:
Q  53 ttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||| ||||||||  || || ||||||| ||||||||||||| | ||||||||||||    
T  45999354 ttatagcttatatgaaagcagtttgactttatcttatcttttgttatagaaatagcttata 45999414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 49557157 - 49557085
Alignment:
Q  41 tatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||| ||||||||||| | ||||| |    |||||||||||||||||||||||| | ||||| ||||||    
T  49557157 tatgaaaacaacttatagcttaaatgaatactatttaactttattttatcttttgttatagaaataacttata 49557085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 1775 - 1835
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    ||||||||||  ||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  1775 gcttatgaaaccaacttatagcgtatatgaaaataaattaactttattttatcttttgtta 1835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 3865 - 3925
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    ||||||||||  ||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  3865 gcttatgaaaccaacttatagcgtatatgaaaataaattaactttattttatcttttgtta 3925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 49060556 - 49060484
Alignment:
Q  41 tatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||||||||||| |||| ||||||  || |||||||||||| |||||||| | ||||||||||||    
T  49060556 tatgaaaataacttatagcttatataaaaataatttgactttattttattttttgttatagaaatagcttata 49060484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 47004106 - 47004015
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata-acaaacacttatatg 128  Q
    ||||||||||| | ||||||| |||||| ||||||| || |||||||||||||| |||||| | |||||||||| | | |||||||||||||    
T  47004106 gcttatgaaaacagcttatagttcatataaaaatagtttgactttattttatctattgttatagaaatagcttacatataaacacttatatg 47004015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 27481345 - 27481435
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata-acaaacacttatat 127  Q
    ||||||||||||||||||||||| ||||| ||| || || ||||  ||||||| ||||||| | |||||||||||| | ||||||||||||    
T  27481345 gcttatgaaaataacttatagcttatatggaaacagtttgacttcgttttatcctttgttatagaaatagcttatacataaacacttatat 27481435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 1417283 - 1417208
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| ||||||| ||| ||||||||| |  || ||||||||||||||||||||| | |||||| |||||    
T  1417283 gcttatgaaaacaacttattgcttatatgaaaacaatttgactttattttatcttttgttatataaatagtttata 1417208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 5006560 - 5006635
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| || ||||| || ||||||||| || || ||||||||||||||||||||| |  |||||||||||    
T  5006560 gcttatgaaaacaatttataccttatatgaaaacagtttgactttattttatcttttgttataggaatagcttata 5006635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 6630621 - 6630551
Alignment:
Q  36 ttgcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaata 106  Q
    ||||||| |||||||| ||||| ||  ||||| ||||| |||||||||||||||||||||||  |||||||    
T  6630621 ttgcttaagaaaataaattataccttgtatgataatagtttaactttattttatcttttgttgtaaaaata 6630551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 8445264 - 8445214
Alignment:
Q  79 ctttattttatcttttgttagaaaaatagcttat-aacaaacacttatatg 128  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||||||||    
T  8445264 ctttattttatcttttgttataaaaatagcttataaacaagcacttatatg 8445214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 28635069 - 28634979
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata-acaaacacttatat 127  Q
    ||||||||||| || ||||||||  ||||||||||| |  | |||| |||||||||||||| ||||||| |||||| | ||||||||||||    
T  28635069 gcttatgaaaacaatttatagcttctatgaaaatagttatattttactttatcttttgttaaaaaaatatcttatagataaacacttatat 28634979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 40689037 - 40689107
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagc 108  Q
    ||||||||| | | ||||||||| |||||||||||  ||||||||||||||||||||| || | |||||||    
T  40689037 gcttatgaacacagcttatagcttatatgaaaataatttaactttattttatcttttgctatagaaatagc 40689107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 39551601 - 39551674
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||  |||||||| ||||||||| || || |||||| | |||||||||||| | ||||||||||||    
T  39551601 ttatgaaaatagattatagcttatatgaaaacagttttactttagtatatcttttgttatagaaatagcttata 39551674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 9527141 - 9527201
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    ||||||||||| ||||||||| | ||||||||| || || |||||||| ||||||||||||    
T  9527141 gcttatgaaaacaacttatagtttatatgaaaacagtttgactttattatatcttttgtta 9527201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 26935618 - 26935674
Alignment:
Q  55 atagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagctta 111  Q
    |||||||||||||||| |  ||||| |||||||||| ||||||| ||||||||||||    
T  26935618 atagctcatatgaaaacaatttaaccttattttatcatttgttataaaaatagctta 26935674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 17989074 - 17989149
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| || |||||| | ||||||||| || || |||||||||||| |||||||| |||| ||| |||||    
T  17989074 gcttatgaaaacaaattatagtttatatgaaaacagtttgactttattttatattttgttataaaactagtttata 17989149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 44241878 - 44241804
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| ||||||||| | |||  ||||||| ||||||||||||||||| |||||| | ||||| ||||||    
T  44241878 gcttatgaaaacaacttataggttatacaaaaatag-ttaactttattttatctgttgttatagaaataacttata 44241804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 45813236 - 45813307
Alignment:
Q  43 tgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttataa 114  Q
    |||||| ||||||||| | ||||||||| |  || |||||||||||||||||| || | |||||||||||||    
T  45813236 tgaaaacaacttatagattatatgaaaacaagttgactttattttatcttttggtatagaaatagcttataa 45813307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 28613622 - 28613660
Alignment:
Q  75 ttaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  28613622 ttaactttgttttatcttttgttataaaaatagcttata 28613660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 31002780 - 31002722
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgt 96  Q
    |||||| |||| | ||||||||| |||||||||||  || |||||||||||||||||||    
T  31002780 gcttatcaaaacagcttatagcttatatgaaaatattttgactttattttatcttttgt 31002722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 43152990 - 43153028
Alignment:
Q  75 ttaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  43152990 ttaactttattttatcttttgttatagaaatagcttata 43153028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 44151533 - 44151591
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    ||||||||| ||||||||||| ||||| ||| || || |||||||| ||||||||||||    
T  44151533 ttatgaaaacaacttatagcttatatggaaacagttttactttattctatcttttgtta 44151591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 5628618 - 5628691
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    |||||||||| | |||||| || | ||||||| || | |||| ||||||||| ||||||| |||||||||||||    
T  5628618 cttatgaaaacagcttatatcttaaatgaaaacagttcaactctattttatcatttgttataaaaatagcttat 5628691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 7623155 - 7623082
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| |||| |||| |||| |||| || |  ||||||||||| ||||||||| ||||||| ||||||    
T  7623155 ttatgaaaatagcttacagcttatataaaaagagttggactttattttaccttttgttataaaaataacttata 7623082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 30134028 - 30133980
Alignment:
Q  78 actttattttatcttttgttagaaaaatagcttata-acaaacacttat 125  Q
    ||||||||||||||||||||  |||||||||||||| | ||||||||||    
T  30134028 actttattttatcttttgttgtaaaaatagcttatacataaacacttat 30133980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 40687590 - 40687654
Alignment:
Q  50 aacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttataa 114  Q
    |||||||||||  |  |||||||||||||| |||||||| ||||||||| | |||||| ||||||    
T  40687590 aacttatagcttgtgcgaaaatagattaacattattttaacttttgttatagaaatagtttataa 40687654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 29973100 - 29973025
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||||| ||||||||||| || ||||||||| || ||||||||||| ||| ||||| | ||||||||||||    
T  29973100 gcttatgaaaacaacttatagcttatgtgaaaatagtttgactttattttaccttgtgttaaagaaatagcttata 29973025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 42597421 - 42597345
Alignment:
Q  37 tgcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||| |||||||||||   ||||||| |  || ||||||||||||||||||||| | ||||||||||||    
T  42597421 tgcttatgaaaacaacttatagcttgcatgaaaacaattttactttattttatcttttgttatagaaatagcttata 42597345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 4558817 - 4558742
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||| ||| | ||||||||  |||||||||||  |||||||||||||||||||| ||| | ||||||||||||    
T  4558817 gcttatggaaacagcttatagcatatatgaaaataatttaactttattttatcttttattatagaaatagcttata 4558742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 26215487 - 26215440
Alignment:
Q  66 gaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||| |||||||||||||||||||||||| | ||||||||||||    
T  26215487 gaaaatagtttaactttattttatcttttgttatagaaatagcttata 26215440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 11056723 - 11056789
Alignment:
Q  43 tgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagct 109  Q
    |||||| ||||||||||| |||||||||||| | |||||||||||  ||||||||| | ||||||||    
T  11056723 tgaaaacaacttatagcttatatgaaaatagttcaactttatttttccttttgttatagaaatagct 11056789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 12224950 - 12225008
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgt 96  Q
    |||||||||| || |||||| | ||||||||||||| || |||||||||||||||||||    
T  12224950 gcttatgaaagtagcttataccccatatgaaaatagtttgactttattttatcttttgt 12225008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 1470909 - 1470982
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||| | ||||||||| |||||||| ||  || ||||||||||||||||| ||| | ||||||||||||    
T  1470909 ttatgaaaacagcttatagcttatatgaaagtaatttgactttattttatcttttattatagaaatagcttata 1470982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 6918245 - 6918320
Alignment:
Q  53 ttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata-acaaacacttatat 127  Q
    |||||||| ||  ||||| || || ||||||||||||||||| ||| | |||||||||||| ||||||||||||||    
T  6918245 ttatagcttattagaaaacagtttgactttattttatcttttattatataaatagcttatatacaaacacttatat 6918320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 35869856 - 35869797
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtt 97  Q
    ||||||||||| ||||||||||| |||||||||| | || | |||||||||| |||||||    
T  35869856 gcttatgaaaacaacttatagcttatatgaaaattgtttgaatttattttatattttgtt 35869797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 42237488 - 42237539
Alignment:
Q  53 ttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaa 104  Q
    |||||||| ||||||||| |  |||||||||||||||||||||||| |||||    
T  42237488 ttatagcttatatgaaaacaatttaactttattttatcttttgttataaaaa 42237539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 27728072 - 27728142
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagc 108  Q
    ||||||||||| |||| |||  | |||||||||||| || ||||||||||||||||| ||| | |||||||    
T  27728072 gcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatctttttttatagaaatagc 27728142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 31315533 - 31315579
Alignment:
Q  67 aaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||| || ||||||||||||||||| ||| ||||||||||||||    
T  31315533 aaaatagtttgactttattttatcttttattataaaaatagcttata 31315579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 34770911 - 34770853
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgt 96  Q
    ||||||||||| ||||||||||| | ||||||| |  || |||||||||||||||||||    
T  34770911 gcttatgaaaacaacttatagcttaaatgaaaacaatttgactttattttatcttttgt 34770853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 1058130 - 1058199
Alignment:
Q  43 tgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttat 112  Q
    |||||||| ||||||||  |||  |||| ||||||||||||||||||  |||| || |||||||||||||    
T  1058130 tgaaaatagcttatagcatatacaaaaacagattaactttattttatgatttgctataaaaatagcttat 1058199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 24558872 - 24558803
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatag 107  Q
    ||||||||||| ||||||||||| ||| |||||||  |||||||   |||||||||||||| | ||||||    
T  24558872 gcttatgaaaacaacttatagcttatacgaaaataatttaacttcggtttatcttttgttacataaatag 24558803  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 38561743 - 38561670
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||| |||||||||   | || ||||||| || ||||||||||||||||||||| | ||||| ||||||    
T  38561743 ttatgaaaacaacttatagtatagataaaaatagtttgactttattttatcttttgttatataaataacttata 38561670  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 1664363 - 1664327
Alignment:
Q  77 aactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  1664363 aactttattttaccttttgttataaaaatagcttata 1664327  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 1667025 - 1666973
Alignment:
Q  77 aactttattttatcttttgttagaaaaatagcttata-acaaacacttatatg 128  Q
    |||||||||| | ||||||||| |||||||||||||| | |||||||||||||    
T  1667025 aactttatttgaccttttgttataaaaatagcttatatataaacacttatatg 1666973  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 1892301 - 1892337
Alignment:
Q  77 aactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  1892301 aactttattttaccttttgttataaaaatagcttata 1892337  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 3945281 - 3945233
Alignment:
Q  50 aacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    ||||||||||| |||| ||||||| || | |||||||||||||||||||    
T  3945281 aacttatagcttatataaaaatagcttcattttattttatcttttgtta 3945233  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 6864510 - 6864562
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatc 90  Q
    ||||||||||| |||||||| || | |||||||||| || |||||||||||||    
T  6864510 gcttatgaaaacaacttataacttacatgaaaatagtttgactttattttatc 6864562  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 7714257 - 7714201
Alignment:
Q  42 atgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgtta 98  Q
    ||||||| ||||||||| | ||||||||| || | | ||||||||||||||||||||    
T  7714257 atgaaaacaacttatagttgatatgaaaacagctcacctttattttatcttttgtta 7714201  T

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Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 8909054 - 8908994
Alignment:
Q  53 ttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||| ||||||||| |  |||||| |||| |||||||||||| || |||||||||||    
T  8909054 ttatagcttatatgaaaacaatttaactatattatatcttttgttataacaatagcttata 8908994  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 34173158 - 34173214
Alignment:
Q  43 tgaaaataacttatagctcatatgaaaatagattaactt-tattttatcttttgtta 98  Q
    |||||||||||||||||| ||| |||||||  ||||||| ||||||| |||||||||    
T  34173158 tgaaaataacttatagcttatacgaaaataatttaacttctattttaccttttgtta 34173214  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 34788493 - 34788553
Alignment:
Q  53 ttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||| ||||| ||| || || |||||||||||||||| || | ||||||||||||||    
T  34788493 ttatagcttatatggaaacagtttgactttattttatctttggtcataaaaatagcttata 34788553  T

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Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 35453681 - 35453733
Alignment:
Q  45 aaaataacttatagctcatatgaaaatagattaactttattttatcttttgtt 97  Q
    |||| ||| |||| || |||||||| ||| |||||||||||||||||||||||    
T  35453681 aaaacaacctataacttatatgaaactagtttaactttattttatcttttgtt 35453733  T

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Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 39551260 - 39551316
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatctttt 94  Q
    ||||||||||| |||||||||||  |||||| | || ||| ||||||||||||||||    
T  39551260 gcttatgaaaacaacttatagcttgtatgaagacagtttagctttattttatctttt 39551316  T

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Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 42764285 - 42764213
Alignment:
Q  39 cttatgaaaataacttatagctcatatgaaaatagattaactttattt-tatcttttgttagaaaaatagctt 110  Q
    |||||||||||| |||||||||  |||||||| || |||| || ||||  ||||||||||| |||||||||||    
T  42764285 cttatgaaaatagcttatagcttgtatgaaaacagtttaatttcatttaaatcttttgttataaaaatagctt 42764213  T

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Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 44168553 - 44168517
Alignment:
Q  62 atatgaaaatagattaactttattttatcttttgtta 98  Q
    ||||||||| | |||||||||||||||||||||||||    
T  44168553 atatgaaaacaaattaactttattttatcttttgtta 44168517  T

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Target: scaffold0060 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 63377 - 63427
Alignment:
Q  79 ctttattttatcttttgttagaaaaatagcttat-aacaaacacttatatg 128  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||||||||    
T  63377 ctttattttatcttttgttataaaaatagcttataaacaagcacttatatg 63427  T

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Target: scaffold0590 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 1140 - 1200
Alignment:
Q  53 ttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||| ||| |||||| ||||| || ||||||||||||||||||||| | ||||||||||||    
T  1140 ttatggcttatatgagaatagtttgactttattttatcttttgttatagaaatagcttata 1200  T

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Target: scaffold0275 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 2835 - 2775
Alignment:
Q  53 ttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||| ||| |||||| ||||| || ||||||||||||||||||||| | ||||||||||||    
T  2835 ttatggcttatatgagaatagtttgactttattttatcttttgttatagaaatagcttata 2775  T

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Target: scaffold0428 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 3923 - 3850
Alignment:
Q  38 gcttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagctta 111  Q
    ||||||||||||| ||||||||  ||| ||||| ||  | |||| | |||||||||||||| ||||||||||||    
T  3923 gcttatgaaaatagcttatagcatataggaaaacagtatgacttcagtttatcttttgttataaaaatagctta 3850  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 27593 - 27520
Alignment:
Q  40 ttatgaaaataacttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    ||||||||| ||||||||| | ||||||||| |  || ||||||||||||||| ||||| | ||||| ||||||    
T  27593 ttatgaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttatagaaataacttata 27520  T

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Target: scaffold0199 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 6804 - 6768
Alignment:
Q  77 aactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  6804 aactttattttaccttttgttataaaaatagcttata 6768  T

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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 51572 - 51512
Alignment:
Q  53 ttatagctcatatgaaaatagattaactttattttatcttttgttagaaaaatagcttata 113  Q
    |||||| | ||||||||| |  ||||||||||||||| |||||||| ||||||| ||||||    
T  51572 ttatagttgatatgaaaacaatttaactttattttatattttgttataaaaataacttata 51512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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