View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16159_low_18 (Length: 291)
Name: NF16159_low_18
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16159_low_18 |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 888315 - 888053
Alignment:
| Q |
18 |
gtggtagcataggattgttttgaatttgctgttagaaagaaaaatcaacagaaattagagcttattagctataactataagcagaatgcacagagaaaat |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
888315 |
gtggtagcatgggattgttttgaatttgctgttagaaagaaaaatcaacagaaattagagcttattagctataactataagcagaatgcacagagaaaat |
888216 |
T |
|
| Q |
118 |
tagttaagatagtcgtaacataaatttggagtatcttctcacaatatatgcgtgtcatatcttgattcgatatccaaaatcgatgcacacattgtaaatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
888215 |
tagttaagatagtcgtaacataaatttggagtatcttctcacaatatatgcgtgtcatatcttgattcgatatccaaaatcgatgcacacattgtaaatc |
888116 |
T |
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| Q |
218 |
aaatggttatgttattttggatacgagtctcattttgaatcttgattccttttgatgattcat |
280 |
Q |
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| T |
888115 |
aaatggttatgttattttggatacgagtctcattttgaatcttgattccttttgatgattcat |
888053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 280
Target Start/End: Original strand, 1002916 - 1003034
Alignment:
| Q |
156 |
tcacaatatatgcgtgtcatatcttgattcgatatccaaaatcgatgcacacattgtaaatcaaatggttatgttattttggatacgagtctcattttga |
255 |
Q |
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|||| ||||||| | ||| || ||||||||||||| |||||||||| ||||||| ||||| |||||||| |||||| |||| || | ||||||||| |
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| T |
1002916 |
tcacgatatatgtgagtcgtaacttgattcgatattcaaaatcgat--acacattttaaatgaaatggttttgttat----gatatgaatatcattttga |
1003009 |
T |
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| Q |
256 |
atcttgattccttttgatgattcat |
280 |
Q |
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| T |
1003010 |
atcttgattccttttaatgaatcat |
1003034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 16494 - 16616
Alignment:
| Q |
18 |
gtggtagcataggattgttttgaatttgctgttagaaagaaaaatcaacagaaattagagcttattagctataactataagcagaatgcac--agagaaa |
115 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
16494 |
gtggtagcataggattgtttggaatttgctgttagaaagaaaaatcaacacaaaacagaacttattagctataactataagcagaatgcacatagagaaa |
16593 |
T |
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| Q |
116 |
attagttaagatagtcgtaacat |
138 |
Q |
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||| ||||||||||| |||||| |
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| T |
16594 |
gttacttaagatagtcataacat |
16616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 48301281 - 48301392
Alignment:
| Q |
18 |
gtggtagcataggattgttttgaatttgctgttagaaagaaaaatcaacagaaattagagcttattagctataactataagcagaatgcacagagaaaat |
117 |
Q |
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|||||||||||||||||| | || |||| || ||||||||||||| || | ||| |||||| |||||||||| |||||||||||| ||| |||||||||| |
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| T |
48301281 |
gtggtagcataggattgtatggagtttgttgctagaaagaaaaataaaaataaaatagagcatattagctatgactataagcagactgcgcagagaaaat |
48301380 |
T |
|
| Q |
118 |
tagttaagatag |
129 |
Q |
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|||||||||||| |
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| T |
48301381 |
tagttaagatag |
48301392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 38192365 - 38192449
Alignment:
| Q |
18 |
gtggtagcataggattgttttgaatttgctgttagaaagaaaaatcaacagaaattagagcttattagctataactataagcaga |
102 |
Q |
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|||||||||||||||| ||| |||||| ||||||||||||||||||| || ||| ||||| ||| |||||||||||||| |||| |
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| T |
38192365 |
gtggtagcataggattatttggaattttctgttagaaagaaaaatcagcataaaatagagtctatcagctataactataatcaga |
38192449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 20019951 - 20019998
Alignment:
| Q |
18 |
gtggtagcataggattgttttgaatttgctgttagaaagaaaaatcaa |
65 |
Q |
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||||||||||||| |||||| || |||||||||||| ||||||||||| |
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| T |
20019951 |
gtggtagcatagggttgtttggagtttgctgttagagagaaaaatcaa |
20019998 |
T |
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