View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16159_low_19 (Length: 291)

Name: NF16159_low_19
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16159_low_19
NF16159_low_19
[»] chr8 (2 HSPs)
chr8 (1-244)||(11390109-11390352)
chr8 (6-244)||(43246318-43246551)
[»] chr3 (2 HSPs)
chr3 (31-244)||(21738461-21738674)
chr3 (153-244)||(14862383-14862474)
[»] chr1 (2 HSPs)
chr1 (6-244)||(39432410-39432648)
chr1 (9-151)||(20797849-20797991)
[»] chr2 (2 HSPs)
chr2 (6-151)||(9666784-9666929)
chr2 (131-243)||(28398453-28398565)
[»] chr5 (2 HSPs)
chr5 (131-218)||(30507926-30508013)
chr5 (131-218)||(30548269-30548356)
[»] chr7 (2 HSPs)
chr7 (131-210)||(20658073-20658152)
chr7 (131-243)||(8772969-8773081)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 11390109 - 11390352
Alignment:
Q  1 gattatcaatcttaaagaccgtttggcggagttggataggaaaggggaagaagaagatttgtcggtcgttgaatgtgatgagttatttggtatctcttcg 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11390109 gattatcactcttaaagaccgtttggcggagttggataggaaaggggaagaagaagatttgtcggtcgttgaatgtgatgagttattcggtatctcttcg 11390208  T
Q  101 caaattcattccctttccaagctgaacaccagtatttgttggcaacagtcgaggagtaagtggctctgtgagggggatgcgaactctaagtttttccatt 200  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  11390209 cagattcattccctttccaagctgaacaccagtatttgttggcaacagtcgaggagcaagtggctccgtgagggggatgcgaactctaagtttttccatt 11390308  T
Q  201 ctattatgtcttctcgtcgacgttttaacactatttgttctgtg 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11390309 ctattatgtcttctcgtcgacgttttaacactatttgttctgtg 11390352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 43246318 - 43246551
Alignment:
Q  6 tcaatcttaaagaccgtttggcggagttggataggaaaggggaagaagaagatttgtcggtcgttgaatgtgatgagttatttggtatctcttcgcaaat 105  Q
    |||| |||||||||||| |||||| ||||||| ||||||||||||  ||  |  |||| | |||||||||||||||||||| | |||| ||  || | ||    
T  43246318 tcaaacttaaagaccgtatggcggtgttggatgggaaaggggaagtggagaacctgtcagacgttgaatgtgatgagttatatagtatttcggcgaagat 43246417  T
Q  106 tcattccctttccaagctgaacaccagtatttgttggcaacagtcgaggagtaagtggctctgtgagggggatgcgaactctaagtttttccattctatt 205  Q
    |||||||||     |||| || |||||||||||||||||||||||| | |   | |||||| | || ||||||  ||| ||||| ||||| |||||| ||    
T  43246418 tcattccct-----agcttaataccagtatttgttggcaacagtcgcgaaaccattggctccgagaaggggatatgaattctaaattttttcattctctt 43246512  T
Q  206 atgtcttctcgtcgacgttttaacactatttgttctgtg 244  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  43246513 atgtcttcccgtcgacgttttaacactatttgctctgtg 43246551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 31 - 244
Target Start/End: Original strand, 21738461 - 21738674
Alignment:
Q  31 gttggataggaaaggggaagaagaagatttgtcggtcgttgaatgtgatgagttatttggtatctcttcgcaaattcattccctttccaagctgaacacc 130  Q
    ||||||| |||||||||||||||| || ||||| |||||||||||||||||||||||| |||| || ||| | |||||||||||||||||| ||||||||    
T  21738461 gttggatgggaaaggggaagaagaggacttgtcagtcgttgaatgtgatgagttatttagtatttcatcgaagattcattccctttccaagttgaacacc 21738560  T
Q  131 agtatttgttggcaacagtcgaggagtaagtggctctgtgagggggatgcgaactctaagtttttccattctattatgtcttctcgtcgacgttttaaca 230  Q
     ||||||||||||| || ||||||||  |||||||| | || ||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||||    
T  21738561 tgtatttgttggcagcaatcgaggagccagtggctccgagaaggggatgcgaactctaaatttttccattttattatgttttctcgtcgacattttaaca 21738660  T
Q  231 ctatttgttctgtg 244  Q
    ||||||||||||||    
T  21738661 ctatttgttctgtg 21738674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 14862383 - 14862474
Alignment:
Q  153 ggagtaagtggctctgtgagggggatgcgaactctaagtttttccattctattatgtcttctcgtcgacgttttaacactatttgttctgtg 244  Q
    |||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14862383 ggagcaagtggctccgtgcgggggatgcgaactctaagtttttccattctattatgtcttctcgtcgacgttttaacactatttgttctgtg 14862474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 6 - 244
Target Start/End: Complemental strand, 39432648 - 39432410
Alignment:
Q  6 tcaatcttaaagaccgtttggcggagttggataggaaaggggaagaagaagatttgtcggtcgttgaatgtgatgagttatttggtatctcttcgcaaat 105  Q
    ||||||||||||||||  |||||||||||||| ||| ||||||||  || ||  |||| |  | ||||||||||||||||| | |||||||  || | ||    
T  39432648 tcaatcttaaagaccgcatggcggagttggattggagaggggaagtggaggacctgtctgatggtgaatgtgatgagttatatagtatctcggcgaagat 39432549  T
Q  106 tcattccctttccaagctgaacaccagtatttgttggcaacagtcgaggagtaagtggctctgtgagggggatgcgaactctaagtttttccattctatt 205  Q
    |||||||||||||||||| |||||||||||||||||||| |||||| | |   | |||||  | || ||||||||||| ||||| ||||| |||||| ||    
T  39432548 tcattccctttccaagcttaacaccagtatttgttggcagcagtcgcgaaaccattggctgcgagaaggggatgcgaattctaaattttttcattctctt 39432449  T
Q  206 atgtcttctcgtcgacgttttaacactatttgttctgtg 244  Q
    |||||||| ||||| ||||||||||||||||| ||||||    
T  39432448 atgtcttcccgtcgtcgttttaacactatttgctctgtg 39432410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 20797991 - 20797849
Alignment:
Q  9 atcttaaagaccgtttggcggagttggataggaaaggggaagaagaagatttgtcggtcgttgaatgtgatgagttatttggtatctcttcgcaaattca 108  Q
    |||||||||||||  |||||| ||||||| ||||||||||||  || ||  |||| | || ||||||||||||||||| | |||| ||  || | |||||    
T  20797991 atcttaaagaccgcatggcggtgttggatgggaaaggggaagtggaggacctgtctgacggtgaatgtgatgagttatatagtatttcggcgaagattca 20797892  T
Q  109 ttccctttccaagctgaacaccagtatttgttggcaacagtcg 151  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  20797891 ttccctttccaagcttaataccagtatttgttggcaacagtcg 20797849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 9666784 - 9666929
Alignment:
Q  6 tcaatcttaaagaccgtttggcggagttggataggaaaggggaagaagaagatttgtcggtcgttgaatgtgatgagttatttggtatctcttcgcaaat 105  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||||  || ||  |||| | |  ||||||||||||||| | | |||||||  || | ||    
T  9666784 tcaatcttaaagaccgcttggcggtgttggatgggaaaggggaagtggaggacctgtctgacagtgaatgtgatgagttttatagtatctcggcgaagat 9666883  T
Q  106 tcattccctttccaagctgaacaccagtatttgttggcaacagtcg 151  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  9666884 tcattccctttccaagctgaataccagtatttgttggcagcagtcg 9666929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 243
Target Start/End: Original strand, 28398453 - 28398565
Alignment:
Q  131 agtatttgttggcaacagtcgaggagtaagtggctctgtgagggggatgcgaactctaagtttttccattctattatgtcttctcgtcgacgttttaaca 230  Q
    ||||| ||||||||||| ||||||| | | |||||  |||| || ||||| || ||||||| ||| ||||||||| ||||||| ||||||||   ||||     
T  28398453 agtatatgttggcaacaatcgaggaatcaatggcttcgtgaaggcgatgcaaattctaagtattttcattctattttgtcttcgcgtcgacgccgtaacg 28398552  T
Q  231 ctatttgttctgt 243  Q
    ||||||| |||||    
T  28398553 ctatttgctctgt 28398565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 30507926 - 30508013
Alignment:
Q  131 agtatttgttggcaacagtcgaggagtaagtggctctgtgagggggatgcgaactctaagtttttccattctattatgtcttctcgtc 218  Q
    ||||| |||||||| || |||||||   |||||||  |||| || |||||||||||||||||||||||||| |||||||| |||||||    
T  30507926 agtatctgttggcagcaatcgaggaaccagtggctgcgtgaaggtgatgcgaactctaagtttttccattccattatgtcctctcgtc 30508013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 30548269 - 30548356
Alignment:
Q  131 agtatttgttggcaacagtcgaggagtaagtggctctgtgagggggatgcgaactctaagtttttccattctattatgtcttctcgtc 218  Q
    ||||| |||||||| || |||||||   |||||||  |||| || |||||||||||||||||||||||||| |||||||| |||||||    
T  30548269 agtatctgttggcagcaatcgaggaaccagtggctgcgtgaaggtgatgcgaactctaagtttttccattccattatgtcctctcgtc 30548356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 20658152 - 20658073
Alignment:
Q  131 agtatttgttggcaacagtcgaggagtaagtggctctgtgagggggatgcgaactctaagtttttccattctattatgtc 210  Q
    |||||||||| ||| |||||||||| | ||||| |  |||| || |||| |||||||||||||||||||||| |||||||    
T  20658152 agtatttgttagcagcagtcgaggaatcagtggttgcgtgaaggtgatgtgaactctaagtttttccattctgttatgtc 20658073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 8773081 - 8772969
Alignment:
Q  131 agtatttgttggcaacagtcgaggagtaagtggctctgtgagggggatgcgaactctaagtttttccattctattatgtcttctcgtcgacgttttaaca 230  Q
    ||||| ||||||||||| ||||||| | |  ||||  |||| || ||||| || ||||||| ||| ||||||||| ||||||| ||||||||   ||||     
T  8773081 agtatatgttggcaacaatcgaggaatcaaaggcttcgtgaaggcgatgcaaattctaagtattttcattctattttgtcttcgcgtcgacgccgtaacg 8772982  T
Q  231 ctatttgttctgt 243  Q
    ||||||| |||||    
T  8772981 ctatttgctctgt 8772969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University