View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16159_low_2 (Length: 560)
Name: NF16159_low_2
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16159_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 51 - 543
Target Start/End: Original strand, 50373342 - 50373826
Alignment:
| Q |
51 |
gttaaagaggattccaaacgaacagttcagagatataaagtccctatagaatccacaaaaaataaatgactaatttgagctggagcttggaaccactact |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50373342 |
gttaaagaggattccaaacgaacagttcagagatataaagtccctatagaatccacaaaaaataaatgactaatttgagctggagcttggaaccactact |
50373441 |
T |
|
| Q |
151 |
atatcccaaagctgcttaagcatgtgcatgtgcatgtgcacaggagttagcttcacaatatgtgcgacatattttcacttcccaatctagctccaacaaa |
250 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50373442 |
atatcccaaagctgcttaagcatgtgca------------caggagttagcttcacaatatgtgcgacatattttcacttcccaatctagctccaacaaa |
50373529 |
T |
|
| Q |
251 |
cctattcccaacaccactcactgtca----ctggtttacggctacacagggtctgcaccacaacctttgactttgagtcaacacttaactctactttcca |
346 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50373530 |
cctattcccaacaccactcactgtcagtcactggtttacggctacacagggtctgcaccacaacctttgactttgagtcaacacttaactctactttccg |
50373629 |
T |
|
| Q |
347 |
aagaccatattgccttgctaatttcaaactttccaacatgccctatagctcatcaacatacgcagtgcagcttcgaaaaatcacttaaccattcaccttc |
446 |
Q |
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|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50373630 |
aaaaccatattgccttgctaattccaaactttccaacatgccctatagctcatcaacatacgcagtgcagcttcgaaaaatcacttaaccattcaccttc |
50373729 |
T |
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| Q |
447 |
atctcttcttaatagtcctccctcccaccatgactttcgctgtctgaattaattgtaatctatcctgccaaaggtggctgccaaccaacctgaattt |
543 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50373730 |
atctcttcttaatagtcctccctcccaccatgactttcgctgtctgaattaattgtaatctatcctgccaaaggtggctgccaaccaacctgaattt |
50373826 |
T |
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