View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16159_low_20 (Length: 279)
Name: NF16159_low_20
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16159_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 52095282 - 52095015
Alignment:
| Q |
1 |
tggttggtgtgctgcaatattgttggatcatttgatatgctgaaattcttcttaatcttgtctgttatgttgtattggttggttaagcagtcagtctgtt |
100 |
Q |
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| T |
52095282 |
tggttggtgtgctgcaatattgttggatcgtttgatatgctgaaattcttcttaatcttgtctgttatgttgtattggttggttaagcagtcagtctgtt |
52095183 |
T |
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| Q |
101 |
ttgacattatagcagcggtaaggtttggtttatccgattttaaacattctgcactggtttttagtggagtatgctacccagagttttgggttatagtttc |
200 |
Q |
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| T |
52095182 |
ttgacattataacagcggtaaggtttggtttatccgattttaaacattctgcactggtttttagtggagtatgctacccagagttttgggttatagtttc |
52095083 |
T |
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| Q |
201 |
tataagatacgattttgaatatcatgctggagaagtctcatctgatcctacatcggtagctccttctt |
268 |
Q |
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| T |
52095082 |
tataagatacgattttgaatatcatgctggagaagtctcatctgatcctacatcggtagctccttctt |
52095015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 38 - 208
Target Start/End: Complemental strand, 36410778 - 36410603
Alignment:
| Q |
38 |
tgctgaaattcttcttaatcttgtctgttatgttgtattggttggtt----aagcagtca--gtctgttttgacattatagcagcggtaaggtttggttt |
131 |
Q |
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| T |
36410778 |
tgctgaaattcttcttaatcttgtttgttatgttgtattggttggtttgttatgcagtcaaagtctgttt-gacattatagcagcgggaaggtttggttt |
36410680 |
T |
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| Q |
132 |
atccgattttaaacattctgcactggtttttagtggagtatgctacccagagttttgggttatagtttctataagat |
208 |
Q |
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| T |
36410679 |
attcgattttaaacattctgcactggtctttagtggagtatgctacccagagttttgggttatagtttatataagat |
36410603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 36410584 - 36410536
Alignment:
| Q |
220 |
tatcatgctggagaagtctcatctgatcctacatcggtagctccttctt |
268 |
Q |
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| T |
36410584 |
tatcatgctggagaagtctcgtctgatcctacatatgtagctccttctt |
36410536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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