View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16159_low_26 (Length: 239)

Name: NF16159_low_26
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16159_low_26
NF16159_low_26
[»] chr1 (6 HSPs)
chr1 (18-232)||(35394871-35395084)
chr1 (21-120)||(26330272-26330371)
chr1 (30-76)||(16976157-16976203)
chr1 (32-82)||(25427418-25427468)
chr1 (30-74)||(17622210-17622254)
chr1 (31-76)||(11993973-11994017)
[»] chr6 (3 HSPs)
chr6 (21-120)||(23947961-23948060)
chr6 (33-120)||(18603138-18603225)
chr6 (21-76)||(23905896-23905951)
[»] chr8 (1 HSPs)
chr8 (20-120)||(17748254-17748354)
[»] chr4 (1 HSPs)
chr4 (20-74)||(25229978-25230031)
[»] chr7 (3 HSPs)
chr7 (21-102)||(27223581-27223662)
chr7 (18-120)||(5487570-5487671)
chr7 (30-119)||(15962990-15963078)
[»] chr5 (1 HSPs)
chr5 (20-76)||(18240753-18240809)
[»] chr2 (1 HSPs)
chr2 (34-120)||(19993622-19993708)
[»] scaffold0636 (1 HSPs)
scaffold0636 (20-72)||(7483-7535)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 35395084 - 35394871
Alignment:
Q  18 aagataacttcattgtgtcatcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttcaagtatcaaattcat 117  Q
    |||||||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  35395084 aagataactttattgtgtcatcttctttaccccttaactcctttatttgatagttcaaatgcaagcattgtcatccaatttcttcaagtatcaaattca- 35394986  T
Q  118 ttttgatatatatttttacttgtgactattgtttttactttagcttcttccacgatggatgatttttgagttttatgtgggttcaaaatgtccaaatata 217  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||   |||||||||||| |||||||||||||||||| |||||||||||    
T  35394985 ttttgatatatatttttatttgtgactattatttttacttcagcttcttccacggcagatgatttttgaattttatgtgggttcaaaaggtccaaatata 35394886  T
Q  218 gatcgacaaaattta 232  Q
     ||||||| ||||||    
T  35394885 aatcgacacaattta 35394871  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 26330371 - 26330272
Alignment:
Q  21 ataacttcattgtgtcatcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttcaagtatcaaattcatttt 120  Q
    ||||| |||||||||||||||||||| || ||| ||| |||||||||||||||| |  |||| ||| | ||| ||| |||||||||||||||||||||||    
T  26330371 ataacatcattgtgtcatcttctctaccttttatctcatttatttgatagttcagaatcaagtatattaatctaatctcttcaagtatcaaattcatttt 26330272  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 16976157 - 16976203
Alignment:
Q  30 ttgtgtcatcttctctatctcttaactcctttatttgatagttcaaa 76  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  16976157 ttgtgtcatcttctctatctcttaactcttttatttgatagttcaaa 16976203  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 25427468 - 25427418
Alignment:
Q  32 gtgtcatcttctctatctcttaactcctttatttgatagttcaaatgcaag 82  Q
    |||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  25427468 gtgtcatcttgtctatcccttaactcctttatttgatagttcaaaagcaag 25427418  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 17622210 - 17622254
Alignment:
Q  30 ttgtgtcatcttctctatctcttaactcctttatttgatagttca 74  Q
    ||||||||||||||||| |||||||||| |||||| |||||||||    
T  17622210 ttgtgtcatcttctctacctcttaactcttttattcgatagttca 17622254  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 11993973 - 11994017
Alignment:
Q  31 tgtgtcatcttctctatctcttaactcctttatttgatagttcaaa 76  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||||    
T  11993973 tgtgtcattttctctatcccttaactcc-ttatttgatagttcaaa 11994017  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 23948060 - 23947961
Alignment:
Q  21 ataacttcattgtgtcatcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttcaagtatcaaattcatttt 120  Q
    |||||||||||||||||||||||||||| || |||| |||||||||||| |||||| |||||   | ||||||||||| |||  ||||||||||||||||    
T  23948060 ataacttcattgtgtcatcttctctatccctgaacttctttatttgataattcaaaagcaagttcaatcatccaatttgttcttgtatcaaattcatttt 23947961  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 18603225 - 18603138
Alignment:
Q  33 tgtcatcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttcaagtatcaaattcatttt 120  Q
    ||||||||||| |||| |||||||| |||||||||||||||| | ||||||| | ||||| ||| | ||   ||||||||||||||||    
T  18603225 tgtcatcttctttatcccttaactcatttatttgatagttcagaagcaagcaaaatcatctaatcttttattgtatcaaattcatttt 18603138  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 23905896 - 23905951
Alignment:
Q  21 ataacttcattgtgtcatcttctctatctcttaactcctttatttgatagttcaaa 76  Q
    |||||||  ||||||||||| ||||||| |||||||||||| ||||||||||||||    
T  23905896 ataacttatttgtgtcatctactctatcccttaactcctttgtttgatagttcaaa 23905951  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 17748254 - 17748354
Alignment:
Q  20 gataacttcattgtgtcatcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttcaagtatcaaattcattt 119  Q
    ||||| ||| |||||| | ||||||||||||||||||| ||||||||||  |||| | | || || | ||||||||| |||||  |||||||||||||||    
T  17748254 gataaattcgttgtgttaacttctctatctcttaactcatttatttgatctttcataagaaaacacaatcatccaatctcttcttgtatcaaattcattt 17748353  T
Q  120 t 120  Q
    |    
T  17748354 t 17748354  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 25229978 - 25230031
Alignment:
Q  20 gataacttcattgtgtcatcttctctatctcttaactcctttatttgatagttca 74  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||||| |||||||    
T  25229978 gataacttctttgtgtcatcttctctatc-cctaactcctttatttgctagttca 25230031  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 27223581 - 27223662
Alignment:
Q  21 ataacttcattgtgtcatcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttc 102  Q
    |||||||  |||||||||||||| | || ||| ||||||||||||||||||||| | | || || | |||||||||||||||    
T  27223581 ataacttgtttgtgtcatcttctttgtcccttcactcctttatttgatagttcataagaaaacacaatcatccaatttcttc 27223662  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 5487570 - 5487671
Alignment:
Q  18 aagataacttcattgtgtcatcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttcaagtatcaaattcat 117  Q
    |||||||||||| ||| |||||||||||| || ||| || |||||||| ||| | || | ||||||| | |||  ||||||||||  |||||||||||||    
T  5487570 aagataacttcaatgtatcatcttctctagcttttatct-ctttattttataatccagaagcaagcacaatcactcaatttcttcttgtatcaaattcat 5487668  T
Q  118 ttt 120  Q
    |||    
T  5487669 ttt 5487671  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 15963078 - 15962990
Alignment:
Q  30 ttgtgtcatcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttcaagtatcaaattcattt 119  Q
    |||| ||||||||||| || ||| | || ||||||||||||| || | ||||||| | ||||||||| |||||  |||||||||||||||    
T  15963078 ttgtatcatcttctct-tcccttgaatcttttatttgatagtgcataagcaagcacattcatccaatctcttcttgtatcaaattcattt 15962990  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 18240753 - 18240809
Alignment:
Q  20 gataacttcattgtgtcatcttctctatctcttaactcctttatttgatagttcaaa 76  Q
    |||||| ||||||||||||||||||||||  ||| ||| |||||||| |||||||||    
T  18240753 gataacatcattgtgtcatcttctctatccattatctcatttatttggtagttcaaa 18240809  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 19993708 - 19993622
Alignment:
Q  34 gtcatcttctctatctcttaactcctttatttgatagttcaaatgcaagcatagtcatccaatttcttcaagtatcaaattcatttt 120  Q
    ||||||||||||||| |||||||  | ||||||| |||||| | ||||||| | ||| ||||| || ||  ||||||||||||||||    
T  19993708 gtcatcttctctatcccttaacttttatatttgacagttcataagcaagcacattcaaccaatctcatcttgtatcaaattcatttt 19993622  T

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Target: scaffold0636 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 7483 - 7535
Alignment:
Q  20 gataacttcattgtgtcatcttctctatctcttaactcctttatttgatagtt 72  Q
    |||||| |||||||||||||||||||||||| ||  || ||||||| ||||||    
T  7483 gataacatcattgtgtcatcttctctatctcctatatcttttattttatagtt 7535  T

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