View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16159_low_28 (Length: 225)

Name: NF16159_low_28
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16159_low_28
NF16159_low_28
[»] chr2 (3 HSPs)
chr2 (9-138)||(34326435-34326564)
chr2 (141-225)||(34325515-34325599)
chr2 (141-225)||(29352218-29352302)
[»] chr8 (2 HSPs)
chr8 (9-138)||(4028511-4028640)
chr8 (141-225)||(4028108-4028192)
[»] chr4 (1 HSPs)
chr4 (14-136)||(28110914-28111036)
[»] chr3 (1 HSPs)
chr3 (14-136)||(24837213-24837335)
[»] chr7 (1 HSPs)
chr7 (141-224)||(30250014-30250097)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 34326564 - 34326435
Alignment:
Q  9 agcataggtgtaaagaagcaggacagcagggaggctgtcatatactcctagccgaaaaatcagaacagcagcataccaaagccgcagcacccgcgtaaca 108  Q
    |||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34326564 agcacaggtgcaaagaagcaggacagcagcgaggctgtcatatactcctagccgaaaaatcagaacagcagcataccaaagccgcagcacccacgtaaca 34326465  T
Q  109 gaccccaaaaaccaccattaccgcaccaga 138  Q
    ||||||||||||||||||||||||||||||    
T  34326464 gaccccaaaaaccaccattaccgcaccaga 34326435  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 34325599 - 34325515
Alignment:
Q  141 cttagttgagaacaagaaaaccaactaatgattcactggatttgacaaaccactttttcttgtaaattattctatttgatggtgc 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34325599 cttagttgagaacaagaaaaccaactaatgattcactggatttgacaaaccactttttcttgtaaattattctatttgatggtgc 34325515  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 29352218 - 29352302
Alignment:
Q  141 cttagttgagaacaagaaaaccaactaatgattcactggatttgacaaaccactttttcttgtaaattattctatttgatggtgc 225  Q
    ||||||| |||||||||||||||||||||   | | |||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  29352218 cttagtttagaacaagaaaaccaactaatctgttattggatttgtcaaaccactctttcttgtaaattattctatttgatggtgc 29352302  T

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Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 4028640 - 4028511
Alignment:
Q  9 agcataggtgtaaagaagcaggacagcagggaggctgtcatatactcctagccgaaaaatcagaacagcagcataccaaagccgcagcacccgcgtaaca 108  Q
    |||| ||||| |||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||    
T  4028640 agcacaggtgcaaagaagcaggacagcagtgaggccgtcatatactcctagccaaaaaagcagaacagcagcataccaaagccgcagcacccgcataaca 4028541  T
Q  109 gaccccaaaaaccaccattaccgcaccaga 138  Q
    ||||||||||||||||||||||||||||||    
T  4028540 gaccccaaaaaccaccattaccgcaccaga 4028511  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 4028192 - 4028108
Alignment:
Q  141 cttagttgagaacaagaaaaccaactaatgattcactggatttgacaaaccactttttcttgtaaattattctatttgatggtgc 225  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4028192 cttagttgagaacaagaaaaccaactaatgatttactggaattgacaaaccactttttcttgtaaattattctatttgatggtgc 4028108  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 28110914 - 28111036
Alignment:
Q  14 aggtgtaaagaagcaggacagcagggaggctgtcatatactcctagccgaaaaatcagaacagcagcataccaaagccgcagcacccgcgtaacagaccc 113  Q
    ||||| |||||||||||||||||  ||||||||||||||||||||||| ||| | |||| |||||||||||||||||| || | ||| | ||| || |||    
T  28110914 aggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccacctaaaaggccc 28111013  T
Q  114 caaaaaccaccattaccgcacca 136  Q
     |||| |||||||||||||||||    
T  28111014 aaaaatccaccattaccgcacca 28111036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 24837335 - 24837213
Alignment:
Q  14 aggtgtaaagaagcaggacagcagggaggctgtcatatactcctagccgaaaaatcagaacagcagcataccaaagccgcagcacccgcgtaacagaccc 113  Q
    ||||| |||||||||||||||||  ||||||||||||||||||||||| ||| | |||| |||||||||||||||||| || | ||| | ||| || |||    
T  24837335 aggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccacctaaaaggccc 24837236  T
Q  114 caaaaaccaccattaccgcacca 136  Q
     |||| |||||||||||||||||    
T  24837235 aaaaatccaccattaccgcacca 24837213  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 30250097 - 30250014
Alignment:
Q  141 cttagttgagaacaagaaaaccaactaatgattcactggatttgacaaaccactttttcttgtaaattattctatttgatggtg 224  Q
    ||||||||| ||||||||||||||||||||  | |    ||| || ||||||||||||||||||| ||||||||||||||||||    
T  30250097 cttagttgaaaacaagaaaaccaactaatgtgtgatccaattcgataaaccactttttcttgtaagttattctatttgatggtg 30250014  T

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