View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16159_low_29 (Length: 215)

Name: NF16159_low_29
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16159_low_29
NF16159_low_29
[»] chr3 (7 HSPs)
chr3 (18-208)||(9757745-9757935)
chr3 (18-196)||(20959672-20959850)
chr3 (18-189)||(30496451-30496622)
chr3 (23-186)||(9761526-9761689)
chr3 (18-189)||(20973582-20973753)
chr3 (18-189)||(30536835-30537007)
chr3 (24-147)||(30495886-30496009)
[»] chr1 (11 HSPs)
chr1 (18-208)||(49048498-49048688)
chr1 (18-196)||(49063562-49063740)
chr1 (23-196)||(49045139-49045313)
chr1 (40-196)||(47830799-47830955)
chr1 (18-196)||(47840861-47841039)
chr1 (18-198)||(33477297-33477477)
chr1 (18-208)||(34506425-34506615)
chr1 (18-196)||(48004978-48005156)
chr1 (18-196)||(2540417-2540595)
chr1 (18-196)||(47826061-47826240)
chr1 (18-180)||(33467264-33467425)
[»] chr2 (4 HSPs)
chr2 (18-198)||(39705667-39705847)
chr2 (18-196)||(11619860-11620038)
chr2 (18-189)||(33238245-33238416)
chr2 (18-189)||(33246166-33246337)
[»] scaffold0121 (2 HSPs)
scaffold0121 (18-198)||(38858-39038)
scaffold0121 (23-196)||(34631-34804)
[»] chr7 (2 HSPs)
chr7 (43-198)||(22651925-22652080)
chr7 (23-138)||(22650239-22650354)
[»] chr8 (1 HSPs)
chr8 (18-208)||(16776644-16776834)
[»] chr5 (3 HSPs)
chr5 (18-187)||(19987994-19988163)
chr5 (18-180)||(22700463-22700625)
chr5 (18-189)||(22001834-22002005)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 9757745 - 9757935
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9757745 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 9757844  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttcttctcactcgac 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  9757845 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttctttccactcgac 9757935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 20959850 - 20959672
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    ||||||||||||||||  | | ||||||||| |||||||||||| |||||||||| || |||||||||||||| || |||||||||||||| || |||||    
T  20959850 caaaggaaaataccttctctccaggtgagaaaacaacgagagcaacatctgcaccacagagggtgcaaagctcactggctttcttgaagagaccactacg 20959751  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttc 196  Q
     ||||| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  20959750 gcgcttcgagaaagtcacttgcaagttgctctcgttgctcatttttttcatctcaatcttttggcgacctcggcttttc 20959672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 30496451 - 30496622
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||| |||||||||||  ||||||||||||||| ||  |||| | ||| |||||| |||||||||||||||||||||||||||||||||||||| ||| |    
T  30496451 caaatgaaaataccttctcactaggtgagaatataattagagtaacatatgcaccacaaagggtgcaaagctcgctagctttcttgaagagtccactatg 30496550  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcg 189  Q
     ||||| ||||||||||||||||||||||| || ||||||||||||||||||   |||||||||||||||||    
T  30496551 gcgcttcgagaaagtcacttgcaggttgctttcattgctcatctttttcatcataatcttttggcgacctcg 30496622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 9761526 - 9761689
Alignment:
Q  23 gaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgct 122  Q
    ||||||||||||  |||||||||||||||||| |||||| ||||| |||| ||||||||||||| ||| ||  ||||||||||||| |||||||||| ||    
T  9761526 gaaaataccttttgactaggtgagaatacaactagagcaacatctacaccacaaagggtgcaaaactcactgactttcttgaagagcccgctacgacact 9761625  T
Q  123 ttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacc 186  Q
    |||||||||||||||| ||||| ||||||||  |||| ||||||||||| ||||||||||||||    
T  9761626 ttgagaaagtcacttggaggtttctctcgttattcatttttttcatctcaatcttttggcgacc 9761689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 20973753 - 20973582
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||| |||||||||||  | | ||||||||| |||| ||||||| ||||||||||||| |||||||||||||| || |||||||||||||| || |||||    
T  20973753 caaatgaaaataccttctctccaggtgagaaaacaatgagagcaacatctgcaccgcatagggtgcaaagctcactggctttcttgaagagcccactacg 20973654  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcg 189  Q
     ||||| |||||||||||||||| ||||||||||||||| || ||||| ||||| |||||||||||||||||    
T  20973653 gcgcttcgagaaagtcacttgcaagttgctctcgttgctaatttttttgatctcaatcttttggcgacctcg 20973582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 30536835 - 30537007
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||| |||||||||||  ||| | ||||||||| ||  |||||| ||| ||| || |||||||||||||||||||||||| |||||||||| || ||| |    
T  30536835 caaatgaaaataccttctcaccatgtgagaatataattagagcaacatatgcgccacaaagggtgcaaagctcgctagctatcttgaagagcccactatg 30536934  T
Q  118 acgctttgagaaagtcacttgcaggttgc-tctcgttgctcatctttttcatctcgatcttttggcgacctcg 189  Q
      ||||  | |||||||||||||| |||| | || |||||||| ||||||||||  |||| ||||||||||||    
T  30536935 gagcttcaaaaaagtcacttgcagattgcttttcattgctcatatttttcatcttaatctattggcgacctcg 30537007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 30496009 - 30495886
Alignment:
Q  24 aaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctt 123  Q
    ||||||||||  ||| | ||||||||| ||  ||||||  || |||||  ||| ||||||||| || |||||||||||||||||| || |||||||||||    
T  30496009 aaaataccttctcaccaagtgagaatataattagagcaagatatgcacgacaacgggtgcaaaacttgctagctttcttgaagagcccactacgacgctt 30495910  T
Q  124 tgagaaagtcacttgcaggttgct 147  Q
     |||||||||||||||||||||||    
T  30495909 cgagaaagtcacttgcaggttgct 30495886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 49048688 - 49048498
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||    
T  49048688 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagtccgctacg 49048589  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttcttctcactcgac 208  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||    
T  49048588 acgctttgagaaagtcacttgtaggttgctctcgttgctcatctttttcatttcgatcttttggcgacctcggcctttctttccactcgac 49048498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 49063740 - 49063562
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || || ||||||||||| ||| || |    
T  49063740 caaaggaaaatacctttccactaggtgagaatacaacgagagcaacatctgcaccacaaagggtgcaaagctcacttgccttcttgaagagcccgttatg 49063641  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttc 196  Q
      ||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  49063640 gtgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatcttttggcggcctcggcctttc 49063562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 49045313 - 49045139
Alignment:
Q  23 gaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgct 122  Q
    |||||||||||| |||||||||||||||||||||||||| ||||| |||| |||||||||||||  || ||  ||||||||||||| || ||||||||||    
T  49045313 gaaaataccttttcactaggtgagaatacaacgagagcaacatctacaccacaaagggtgcaaaattcactgactttcttgaagagcccactacgacgct 49045214  T
Q  123 ttgagaaagtcacttgcagg-ttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttc 196  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||    
T  49045213 ttgagaaagtcacttgaaggtttgctctcgttgctcatctttttcatctcaatcttttggcgaccacgacctttc 49045139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 47830799 - 47830955
Alignment:
Q  40 aggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgc 139  Q
    |||||||||||||||||||||| ||||||||||||| || ||||||||||| || |||||||||||||| || ||||| ||||| |||||||||||||||    
T  47830799 aggtgagaatacaacgagagcaacatctgcaccgcagagagtgcaaagctcactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgc 47830898  T
Q  140 aggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttc 196  Q
    | |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  47830899 aagttgctctcgttgctcatttttttcatctcaatcttttggcgacctcggcttttc 47830955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 47840861 - 47841039
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||| |||||||||||  | | ||||||||| |||||||||||| |||||||||| || ||||||||||||||||| ||||||||||| || || |||||    
T  47840861 caaatgaaaataccttctccccaggtgagaaaacaacgagagcaacatctgcaccacagagggtgcaaagctcgctggctttcttgaaaagcccactacg 47840960  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttc 196  Q
     ||||| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  47840961 gcgcttcgagaaagtcacttgcaagttgctctcgttgctcatttttttcatctcaatcttttggcgacctcggcttttc 47841039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 33477477 - 33477297
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||| ||||| |||||  |||||||||||||||||| |||||||  || |||||| |||||||||||||||||||| |||||||||||||| || |||||    
T  33477477 caaatgaaaacaccttatcactaggtgagaatacaatgagagcaatatatgcaccacaaagggtgcaaagctcgctggctttcttgaagaggccactacg 33477378  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttctt 198  Q
    |||||| ||||||||||||||||  ||||||||||||||||| ||||||||||| || |||||||||||| | ||||||||    
T  33477377 acgcttcgagaaagtcacttgcaaattgctctcgttgctcatttttttcatctcaattttttggcgaccttgacctttctt 33477297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 34506615 - 34506425
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||| ||||| |||||  |||||||||||||||||| |||||||  || |||||| ||||||||||||||||| ||||||||||||||||| || |||||    
T  34506615 caaatgaaaacaccttatcactaggtgagaatacaatgagagcaatatatgcaccacaaagggtgcaaagctcactagctttcttgaagaggccactacg 34506516  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttcttctcactcgac 208  Q
     ||||| ||||||||||||||||  ||||||||||||||||| ||||||||||| || |||||||||||| ||| ||||||  ||||||||    
T  34506515 gcgcttcgagaaagtcacttgcaaattgctctcgttgctcatttttttcatctcaattttttggcgaccttggcttttctttccactcgac 34506425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 48005156 - 48004978
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||| |||||||||||  | | ||||||| | |||||||||||| ||||||||||||| |||||||||||||| || |||||||||||||| || |||||    
T  48005156 caaatgaaaataccttctccccaggtgagtaaacaacgagagcaacatctgcaccgcagagggtgcaaagctcactggctttcttgaagagaccactacg 48005057  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttc 196  Q
     ||||| |||||||||||||||| || ||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||    
T  48005056 gcgcttcgagaaagtcacttgcaagtggctctcgttgctcatttttttaatctcaatcttttggcgacctcggcttttc 48004978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 2540595 - 2540417
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||| |||||||||||  | | ||||||||| | || ||||||| |||||||||| || || ||||||||||| || |||||||||||||| || |||||    
T  2540595 caaatgaaaataccttctccccaggtgagaaaataatgagagcaacatctgcaccacagagagtgcaaagctcactggctttcttgaagagcccactacg 2540496  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttc 196  Q
     ||||| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  2540495 gcgcttcgagaaagtcacttgcaagttgctctcgttgctcatttttttcatctcaatcttttggcgacctcggcttttc 2540417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 47826061 - 47826240
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||| |||||||||||  | | ||||||||| |||||||||||| |||||||||| || | ||| |||||||| ||||||||||||||||| || |||||    
T  47826061 caaatgaaaataccttctctccaggtgagaaaacaacgagagcaacatctgcaccacagatggtacaaagctcactagctttcttgaagagcccactacg 47826160  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctca-tctttttcatctcgatcttttggcgacctcggcctttc 196  Q
     ||||| |||||||||||||||| ||||||||||||||||| | ||||||||||| |||||||||  |||||||| ||||    
T  47826161 gcgcttcgagaaagtcacttgcaagttgctctcgttgctcattttttttcatctcaatcttttggaaacctcggcttttc 47826240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 33467425 - 33467264
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||| ||||| |||||  |||||||||||||||||| |||||||  || |||||| |||||||||||||||||||||||||||||||| || ||  | |     
T  33467425 caaatgaaaacaccttctcactaggtgagaatacaatgagagcaatatatgcaccacaaagggtgcaaagctcgctagctttcttgaataggccattgca 33467326  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttg 180  Q
    | |||| ||||| |||||||||| |||||||||||||||||| ||||||||||| || |||||    
T  33467325 atgcttcgagaatgtcacttgcaagttgctctcgttgctcat-tttttcatctcaattttttg 33467264  T

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Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 39705847 - 39705667
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||    
T  39705847 caaaggaaaatacctttccactagttgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagcccgctacg 39705748  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttctt 198  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39705747 acgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcatttcgatcttttggcgacctcggcctttctt 39705667  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 11620038 - 11619860
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||| |||||||||||  | ||||||||||| ||||| |||||| |||||||||| || |||||||||||||| || ||||| |||||||| || |||||    
T  11620038 caaatgaaaataccttctctctaggtgagaaaacaacaagagcaacatctgcaccacagagggtgcaaagctcactggcttttttgaagagcccactacg 11619939  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttc 196  Q
     ||||| |||||||||||||||| ||||||||||||| | || |||||||| || ||||||||||||||| ||| ||||    
T  11619938 gcgcttcgagaaagtcacttgcaagttgctctcgttggtaatttttttcatttcaatcttttggcgaccttggcttttc 11619860  T

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Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 33238416 - 33238245
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||| |||||||||||  |||||||||||||||  |  ||||||  || |||||| |||||||| |||||||| || |||||||||||||| || |||||    
T  33238416 caaatgaaaataccttctcactaggtgagaatatgattagagcaatatatgcaccacaaagggtacaaagctcactggctttcttgaagagcccactacg 33238317  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcg 189  Q
     ||||| |||||||||||||||| |||||| || |||||||||||||||||||| |||||||| ||||||||    
T  33238316 gcgcttcgagaaagtcacttgcaagttgctttcattgctcatctttttcatctcaatcttttgtcgacctcg 33238245  T

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Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 33246337 - 33246166
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||| |||||||||||  |||||||||||||||  |  ||||||  || |||||| |||||||| |||||||| || |||||||||||||| || |||||    
T  33246337 caaatgaaaataccttctcactaggtgagaatatgattagagcaatatatgcaccacaaagggtacaaagctcactggctttcttgaagagcccactacg 33246238  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcg 189  Q
     ||||| |||||||||||||||| |||||| || |||||||||||||||||||| || ||||| ||||||||    
T  33246237 gcgcttcgagaaagtcacttgcaagttgctttcattgctcatctttttcatctcaattttttgacgacctcg 33246166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 39038 - 38858
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| |  |||||||||||||| ||||||||    
T  39038 caaaggaaaatagctttccactaggtgagaatacaacaagagcagcatctgcaccacaaagggtgcaaatctcaccggctttcttgaagagcccgctacg 38939  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttctt 198  Q
     | |||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  38938 gcactttgagaaagtaacttgcaagttgctctcgtcactcatctttttcatctcgatcttttggcgaccccggcctttctt 38858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 34804 - 34631
Alignment:
Q  23 gaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgct 122  Q
    |||||||| ||| |||||||||||||||||||||||||| ||||| |||| |||||||||||||||||  |  ||||||| |||||||| ||||||||||    
T  34804 gaaaatactttttcactaggtgagaatacaacgagagcaacatctacaccacaaagggtgcaaagctcattgactttcttaaagagtcccctacgacgct 34705  T
Q  123 ttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttc 196  Q
    |||| ||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||| || ||||||    
T  34704 ttgacaaagtcacttgaaggttactcttgttgctcatctttttcatctcgatcttttggcaaccacgacctttc 34631  T

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Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 43 - 198
Target Start/End: Complemental strand, 22652080 - 22651925
Alignment:
Q  43 tgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcagg 142  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||| ||    | ||| |||||||||||||||||||||||| ||||||| |||||||||    
T  22652080 tgagaatacaacgagagcaacatctgcaccacaaagggtgtaaagttcatcggattttttgaagagtccgctacgacgctttaagaaagttacttgcagg 22651981  T
Q  143 ttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttctt 198  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  22651980 ttgctctcgttgctcatctttttcatctcgatcatttggcgacctcagcctttctt 22651925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 22650354 - 22650239
Alignment:
Q  23 gaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgct 122  Q
    ||||||||||||  ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||  |  ||||||||||||||||||||||| |||    
T  22650354 gaaaatacctttttactaggtgagaatacaacgagagcaacatctacaccacaaagggtgcaaagctcattgactttcttgaagagtccgctacgatgct 22650255  T
Q  123 ttgagaaagtcacttg 138  Q
    || |||||||||||||    
T  22650254 ttaagaaagtcacttg 22650239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 16776644 - 16776834
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||| |||||||||||  | | ||||||||| ||||| |||||| |||||||||| || || ||||||||||| || |||||||||||||| || |||||    
T  16776644 caaatgaaaataccttctccccaggtgagaaaacaacaagagcaacatctgcaccacagagagtgcaaagctcactggctttcttgaagagcccactacg 16776743  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttcttctcactcgac 208  Q
     ||||| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| | |||||||||    
T  16776744 gcgcttcgagaaagtcacttgcaagttgctctcgttgctcatttttttcatctcaatcttttggcgacctcggcttttcctttcactcgac 16776834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 19988163 - 19987994
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||| ||||| |||||  ||| ||||||||||| ||  |||||| ||| |||||| || |||||||||||||||||||||||||||||||| || |||||    
T  19988163 caaatgaaaagaccttctcaccaggtgagaatataattagagcaacatatgcaccacacagggtgcaaagctcgctagctttcttgaagagcccactacg 19988064  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacct 187  Q
    |||||| |||||||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||    
T  19988063 acgcttcgagaaagtcacttgaaggttgctttcattgctcatctttttcatctcaatcttttggcgacct 19987994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 22700463 - 22700625
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||| |||||||||||  ||||||||||||||| ||  ||||||  || |||||| |||||||||||||||||||||||||| || ||||| ||  ||||    
T  22700463 caaatgaaaataccttctcactaggtgagaatataattagagcaatatatgcaccacaaagggtgcaaagctcgctagcttttttaaagagcccaatacg 22700562  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttg 180  Q
     |||||||||||||||||||||| |||||| || |||||||||||||||||||| ||||||||    
T  22700563 gcgctttgagaaagtcacttgcaagttgctttcattgctcatctttttcatctcaatcttttg 22700625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 22002005 - 22001834
Alignment:
Q  18 caaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacg 117  Q
    |||| |||||||||||| |||| |||||||| |  |  |||||| ||| |||||| |||||  |||||||||||||||||||||||||||| || |||||    
T  22002005 caaatgaaaataccttttcacttggtgagaagattattagagcaacatatgcaccacaaagactgcaaagctcgctagctttcttgaagagcccactacg 22001906  T
Q  118 acgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcg 189  Q
     ||||| |||||||||||||| ||| |||| || |||||||||||||||||||| |||||||| ||||||||    
T  22001905 gcgcttcgagaaagtcacttgtaggctgctttcattgctcatctttttcatctcaatcttttgccgacctcg 22001834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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