View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16159_low_3 (Length: 520)
Name: NF16159_low_3
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16159_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 20 - 515
Target Start/End: Original strand, 36989136 - 36989626
Alignment:
| Q |
20 |
cactagacaagcagcaccacccaccaccaccaacnnnnnnngttaagttatgtcagctccatcaattataagggatagaggaatctagtagctagtgccc |
119 |
Q |
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| T |
36989136 |
cactagacaagcagcaccacccaccaccaccaacaaaaaaagttaagttatgtcagctccatcaattataagggatagaggaatctagtagctagtgccc |
36989235 |
T |
|
| Q |
120 |
tttgaattcggactcgctgcacctagtgaatttctcattcactagttagggtatcagcaatcgttcgattaaaatgagacggtctaaaaaagtgcacatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36989236 |
tttgaattcggactcgctgcacctagtgaatttcgcattcacaagttagggtatcaacaatcgttcgattaaaatgagacggtccaaaaaagtgcacatt |
36989335 |
T |
|
| Q |
220 |
ttaatttcaaatttataatttaaaatactgatttaaattttgattgtccgatcttaattaagccatcttgacgtgccgggggcatgttgactgcagggga |
319 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
36989336 |
ttgatttcaaatttataatttaaaatactgatttgaattttgactgtccgatcttaattaaaccatcttgacgtgccggaggcatgttgactgcagggga |
36989435 |
T |
|
| Q |
320 |
gctgggtttgtgtcctttggactcagctgacacatatcagtactcagcatatgatcatcatttgatgcaacaaataataaggctccaggctctcaaagcc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36989436 |
gctgggtttgtgtcctttggactcagctgacacatatcagtactcagcatatgatcatcatttgatgcaacaaataataaggctccaggctctccaagcc |
36989535 |
T |
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| Q |
420 |
aagacaaaattctcagtgtagctctataatgaaattcaaccaacataatgattacaaatttacaaaccccagcagctagcctagatctctgctcct |
515 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
36989536 |
aagacaaaattctcagtgtag--ctataatgaaattcaactgacataatgattacaaatttacaaaccc---cagctagcctagatctctgttcct |
36989626 |
T |
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