View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16159_low_7 (Length: 481)
Name: NF16159_low_7
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16159_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 5 - 478
Target Start/End: Original strand, 1528202 - 1528677
Alignment:
| Q |
5 |
tataatgaaccttaaagtttccacgctggtggtgttgaacttgtcgaatactagaatgtgtgacaaatcactctacatgatctcaatgagttgcttaggg |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
1528202 |
tataatgaaccttaaagtttccacgctggtggtgttgaacttgtcgcatactagaatttgtgacaaatcactctacatgatctcaacgagttgctttggg |
1528301 |
T |
|
| Q |
105 |
ttactgcatcttgacttgggacattgctataatgtgacagagaatgtagtcatgcaagttgtagaaaactgcacacaactgaga--gataaatttgcaag |
202 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
1528302 |
ttactgcatcttgacttgggacattgctataatgagacagagaatggagtcatgcaagttgtagaaaactgcacacaactgagagagataaatttgcagg |
1528401 |
T |
|
| Q |
203 |
gttgttgtaaagtggttgctgatgttgttaaatcaatggtatttgtaaggtcgtcacttagaaagataatggctccgccttgttttcgttgtaatgacag |
302 |
Q |
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| T |
1528402 |
gttgttgtaaagtggttgctgatgttgttaaatcaatggtatttataaggtcgtcacttagaaagatagtggctccgccttgttttcattgtagtgacag |
1528501 |
T |
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| Q |
303 |
aaagcggaaatttttcttgcgtcatggatgccttgtttgctagtatgttggaagtgatctgctaaagtttgaattatgaaaagcaagtgaaatattcata |
402 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
1528502 |
aaagcggaaatttatcttgcgtcatggatgccttgtttgctagtatgttggaactgatctgctaaagtttgaattatgaaaagtaagtaaaatattcata |
1528601 |
T |
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| Q |
403 |
tttttaggagtaacacctacattttatttgttgttgaagatgtcagcttaaatttcttgtattttcttctcactcg |
478 |
Q |
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| T |
1528602 |
tttttaggagttacatctacattttttttgttgttgaagatgtcagcttaaatttcttgtattttcttatcactcg |
1528677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 12120141 - 12120366
Alignment:
| Q |
5 |
tataatgaaccttaaagtttccacgctggtggtgttgaacttgtcgaatactagaatgtgtgacaaatcactctacatgatctcaatgagttgcttaggg |
104 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
12120141 |
tataatgaaccttaaagtttccaccctggtggtgttgaacttgttgcatactagaatttgtgacaaatcactctacatgatctcaacgagttgctttggg |
12120240 |
T |
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| Q |
105 |
ttactgcatcttgacttgggacattgctataatgtgacagagaatgtagtcatgcaagttgtagaaaactgcacacaact--gagagataaatttgcaag |
202 |
Q |
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| T |
12120241 |
ttactgcatcttgacttgggacattgctataatgtgacagagaatggagtcatgcaaattgtagaaaactgcacacaactgagagagataaatttgcagg |
12120340 |
T |
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| Q |
203 |
gttgttgtaaagtggttgctgatgtt |
228 |
Q |
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| T |
12120341 |
gttgttgtaaagtggttgctgatgtt |
12120366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 71 - 372
Target Start/End: Complemental strand, 6006361 - 6006058
Alignment:
| Q |
71 |
atcactctacatgatctcaatgagttgcttagggttactgcatcttgacttgggacattgctataatgtgacagagaatgtagtcatgcaagttgtagaa |
170 |
Q |
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|||||||||| ||||||||||||||||||| ||| ||||||| ||||| ||||||| ||| ||| |||| ||| |||| | ||| |||||||| |||||| |
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| T |
6006361 |
atcactctacgtgatctcaatgagttgctttgggctactgcaacttgatttgggacgttgttatgatgtcacaaagaagggagtgatgcaagtcgtagaa |
6006262 |
T |
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| Q |
171 |
aactgcacacaactgagaga--taaatttgcaaggttgttgtaaagtggttgctgatgttgttaaatcaatggtatttgtaaggtcgtcacttagaaaga |
268 |
Q |
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||||||| |||| ||||||| |||||||||| | |||| ||||||||| |||||||||||| | | ||||||||| |||| | ||| | ||||||| |
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| T |
6006261 |
aactgcaaacaattgagagagataaatttgcaggattgtcataaagtggtagctgatgttgttgacttgatggtatttacaaggccatcattgagaaaga |
6006162 |
T |
|
| Q |
269 |
taatggctccgccttgttttcgttgtaatgacagaaagcggaaatttttcttgcgtcatggatgccttgtttgctagtatgttggaagtgatctgctaaa |
368 |
Q |
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||| ||||| ||| ||||| |||||| |||||| ||||| ||| | ||||||||||||||||||||||||||||||||| ||||| || |||||| || |
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| T |
6006161 |
taactgctccacctggtttttgttgtagtgacagcaagcgaaaactcttcttgcgtcatggatgccttgtttgctagtattttggagctgctctgctgaa |
6006062 |
T |
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| Q |
369 |
gttt |
372 |
Q |
| |
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|||| |
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| T |
6006061 |
gttt |
6006058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 306 - 368
Target Start/End: Original strand, 12120373 - 12120435
Alignment:
| Q |
306 |
gcggaaatttttcttgcgtcatggatgccttgtttgctagtatgttggaagtgatctgctaaa |
368 |
Q |
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| T |
12120373 |
gcggaaatttttcttgcgtcatggatgccttgtgtgctagtatgttggaagtgatctgctaaa |
12120435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 348
Target Start/End: Original strand, 10579968 - 10580000
Alignment:
| Q |
316 |
ttcttgcgtcatggatgccttgtttgctagtat |
348 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
10579968 |
ttcttgcgtcatggatgccttctttgctagtat |
10580000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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