View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16159_low_8 (Length: 416)
Name: NF16159_low_8
Description: NF16159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16159_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 101 - 406
Target Start/End: Complemental strand, 4498925 - 4498620
Alignment:
| Q |
101 |
aatacgagacttcaatacaacttcaatatcgaccagactcctagcagcgggatggtccaattcccacattttcgtccctcttgacagataaagacaaagg |
200 |
Q |
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| T |
4498925 |
aatacgagacttcaatacaacttcaatatcgaccagactcctagcggcggtatggtccaattcccacattttcatccctcttgacagataaagacaaagg |
4498826 |
T |
|
| Q |
201 |
tatcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgataaagaaaatagcaatgcaaaccccccaaaaccctgc |
300 |
Q |
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| T |
4498825 |
tatcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgatcaagaaagtagcaatgcaaaccccccaaaaccctgc |
4498726 |
T |
|
| Q |
301 |
tgcaaatccaactcccattcctatgtagaaatctaatgtgttgaagaaacctgcatcggaatttccaccctccaaaacttgtttaagtttggtacaattg |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4498725 |
tgcaaatccaactcccattcctatgtagaaatctgatgtgttgaagaaacctgcatcggaatttccaccctccaaaacttgtttaagtttggtacaattg |
4498626 |
T |
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| Q |
401 |
ttcatc |
406 |
Q |
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|||||| |
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| T |
4498625 |
ttcatc |
4498620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 191 - 406
Target Start/End: Original strand, 4329074 - 4329289
Alignment:
| Q |
191 |
aagacaaaggtatcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgataaagaaaatagcaatgcaaacccccc |
290 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4329074 |
aagacaaaggtctcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgttaaagaaaatagcaatgcaaacccccc |
4329173 |
T |
|
| Q |
291 |
aaaaccctgctgcaaatccaactcccattcctatgtagaaatctaatgtgttgaagaaacctgcatcggaatttccaccctccaaaacttgtttaagttt |
390 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||| | |||||| ||||| |||||||||| ||||||||||||||| | ||| |
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| T |
4329174 |
aaaaccctgctgcaaatccaactcccattcctacgtagaaatctgatgtgtcaacgaaaccagcatcagaatttccacgctccaaaacttgtttcatttt |
4329273 |
T |
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| Q |
391 |
ggtacaattgttcatc |
406 |
Q |
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|||||||| |||||| |
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| T |
4329274 |
tgtacaattattcatc |
4329289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 4328946 - 4329036
Alignment:
| Q |
101 |
aatacgagacttcaatacaacttcaatatcgaccagactcctag----cagcgggatggtccaattcccacattttcgtccctcttgacag |
187 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| ||||||||||||| |
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| T |
4328946 |
aatatgagacttcaatgcaacttcaatatcgaccagactcctagtggcgtgcggtatggtccaatttccacattttcatccctcttgacag |
4329036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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