View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1615_high_1 (Length: 422)
Name: NF1615_high_1
Description: NF1615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1615_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Original strand, 40998229 - 40998625
Alignment:
| Q |
13 |
atcatcacttagattgatcaattcgatcttattttcattaccttgctattgtctatttatcgtgattcaaacacaccatggcaaacaactctcttccccc |
112 |
Q |
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| T |
40998229 |
atcatcacttagattgatcaattcgatcttatttttattaccttgctattgtctatttatcgtgattcaaacacaccatggcaaacaactctcttccccc |
40998328 |
T |
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| Q |
113 |
actctcaaccctcgccgtccccatttgaaaactcccataatcaagtgtttggcaagctaattcaattttacggaagtga---cacattttgaaaacttaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
40998329 |
actctcaaccctcgccgtccccatttgaaaactcccataattaagtgtttggtatgctaattcaattttacggaggtgatgacacattttgaaaacttaa |
40998428 |
T |
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| Q |
210 |
gttgacccaagggccaagagccaagcaatccatccaagactcaaattcatcatatttgtatggacgaaaaacacattttaacctttttataattatacac |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
40998429 |
gttgacccaagggccaagagccaagcaatccatccaagactcaaactcatcatatttgtaaggaccaaaaacacattttaacctttttataattatacag |
40998528 |
T |
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| Q |
310 |
aacacacccctattggtggtttgggcatctagcaaatatagtttgagtagacagatcaatttacacaaaagattatataattggctccactacttac |
406 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40998529 |
aacgcacccctattggtggtttgggcatctagcaaatatagtttgagtagacagatcaatttacacaaaagattatataattggctccactacttac |
40998625 |
T |
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