View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1615_low_1 (Length: 486)
Name: NF1615_low_1
Description: NF1615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1615_low_1 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 226 - 486
Target Start/End: Complemental strand, 45821990 - 45821730
Alignment:
| Q |
226 |
gcagaaaaaactcccatgatattccccggcgtccaagtcgagtgagtttcgctgacccaattaagagagttagttggaaacgctctctctctaccaggtt |
325 |
Q |
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| T |
45821990 |
gcagaaaaaactcccatgatattccccggcgtccaagtcgagtgagtttcgctgacccaattaagagagttagttggaaacgctctctctctaccaggtt |
45821891 |
T |
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| Q |
326 |
tgttctcaatttataaaaagttcctatttttcagtaaaccccatttcaattgttgaatgtgtatgcttgttccacttttggaggtgcacaattgttttaa |
425 |
Q |
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| T |
45821890 |
tgttctcaatttataaaaagttcctatttttcagtaaaccccatttcaattgttgaatgtgtatgcttgttccacttttggaggtgcacaattgttttaa |
45821791 |
T |
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| Q |
426 |
catgtttggatgtttttccagtagaattgattttaggttgaagctatgatttgtagctttt |
486 |
Q |
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| T |
45821790 |
catgtttggatgtttttccagtagaattgattttaggttgaagctatgatttgtagctttt |
45821730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 25 - 169
Target Start/End: Complemental strand, 45822191 - 45822047
Alignment:
| Q |
25 |
ttcccttgatttatggtcacaaatcgtcgccgaagaaaaccaacactacgataatcaaatcgacatcgttttccgcagaagaaaacctcgcaatgaccca |
124 |
Q |
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| T |
45822191 |
ttcccttgatttatggtcacaaatcgtcgccgaagaaaaccaacactacgataatcaaatcgacatcgttttccgcagaagaaaacctcgcaatgaccca |
45822092 |
T |
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| Q |
125 |
aataatgttaactcgttagtaactaactcctcattcttcctcttc |
169 |
Q |
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| T |
45822091 |
aataatgttaactcgttagtaactaactcctcattcttcctcttc |
45822047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 486
Target Start/End: Original strand, 1102126 - 1102167
Alignment:
| Q |
445 |
agtagaattgattttaggttgaagctatgatttgtagctttt |
486 |
Q |
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| T |
1102126 |
agtagaattgattttaacttgaagctaggatttgtagctttt |
1102167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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