View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1615_low_3 (Length: 386)
Name: NF1615_low_3
Description: NF1615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1615_low_3 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0256 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0144 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 12 - 371
Target Start/End: Original strand, 37311 - 37670
Alignment:
| Q |
12 |
atcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaaga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37311 |
atcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaaga |
37410 |
T |
|
| Q |
112 |
ggtgaacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagacc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37411 |
ggtgaacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaacgacc |
37510 |
T |
|
| Q |
212 |
agatgtcatcatcaaataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcaccttt |
311 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
37511 |
agatgtcatcatcagataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctgaagtctggtagtgaccaatattgatgcaccttt |
37610 |
T |
|
| Q |
312 |
ctttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaac |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37611 |
ctttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaac |
37670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 12 - 371
Target Start/End: Original strand, 16657833 - 16658192
Alignment:
| Q |
12 |
atcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaaga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16657833 |
atcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgtaaaaggcttcccaatactttagcagcaaga |
16657932 |
T |
|
| Q |
112 |
ggtgaacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagacc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16657933 |
ggtgaacccacacattttctcactaacttttggcctatttccacaagatctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaacgacc |
16658032 |
T |
|
| Q |
212 |
agatgtcatcatcaaataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcaccttt |
311 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16658033 |
agatgtcatcatcagataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcaccttt |
16658132 |
T |
|
| Q |
312 |
ctttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaac |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16658133 |
ctttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaac |
16658192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 12 - 371
Target Start/End: Complemental strand, 16868340 - 16867981
Alignment:
| Q |
12 |
atcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaaga |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868340 |
atcatctgctaaattccaaaactcactttccaccacagaagtccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaaga |
16868241 |
T |
|
| Q |
112 |
ggtgaacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagacc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
16868240 |
ggtgaacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaacgatc |
16868141 |
T |
|
| Q |
212 |
agatgtcatcatcaaataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcaccttt |
311 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868140 |
agatgtcatcatcagataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcaccttt |
16868041 |
T |
|
| Q |
312 |
ctttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaac |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868040 |
ctttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactccaaac |
16867981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 36 - 368
Target Start/End: Original strand, 16837525 - 16837857
Alignment:
| Q |
36 |
actttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcact |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837525 |
actttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcact |
16837624 |
T |
|
| Q |
136 |
aacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagatgtcatcatcaaataactgtg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
16837625 |
aacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaacgaccagatgtcatcatcagataactgtg |
16837724 |
T |
|
| Q |
236 |
ctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaagttgcaacaaagactt |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
16837725 |
ctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccatttggcaacaaagactt |
16837824 |
T |
|
| Q |
336 |
taacttattccatttctcttggtcttcactcca |
368 |
Q |
| |
|
||| ||||||||||| ||||||| |||||||| |
|
|
| T |
16837825 |
gaacgtattccatttcacttggtcatcactcca |
16837857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 368
Target Start/End: Original strand, 17069335 - 17069686
Alignment:
| Q |
20 |
ctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069335 |
ctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacc |
17069434 |
T |
|
| Q |
120 |
cacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagatgtca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069435 |
cacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctctttgctccaaaagcatgttgtttgaacaaagaccagatgtca |
17069534 |
T |
|
| Q |
220 |
tcatcaaataactgtgctaaaggatg---aaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttc |
316 |
Q |
| |
|
|||||| ||||| ||| ||||||||| | | | |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17069535 |
tcatcagataaccgtgataaaggatgagcatcatgagttcccatgatggatgcaacaatgtcaagtctggtagtgactaaaattgatgcacctttctttc |
17069634 |
T |
|
| Q |
317 |
caagttgcaacaaagactttaacttattccatttctcttggtcttcactcca |
368 |
Q |
| |
|
|| | | ||||||||||| || ||||||||||| ||||||| |||||||| |
|
|
| T |
17069635 |
catttggtaacaaagacttgaagctattccatttcacttggtcatcactcca |
17069686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 368
Target Start/End: Original strand, 16796999 - 16797346
Alignment:
| Q |
21 |
taaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaaccc |
120 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16796999 |
taaattccaaaattcactttccagtacagaaatccattgatgttcgtcgcttgtaaagcgcaaactgcttcccaatactttagcagcaagaggtgaaccc |
16797098 |
T |
|
| Q |
121 |
acacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagatgtcat |
220 |
Q |
| |
|
|||||||||||||||||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16797099 |
acacattttctcactaacttcttgcctattgccacaagctctgcacgctcttctctatttgctccaaaagcttgttgtttgaacaaagaccagatgtcat |
16797198 |
T |
|
| Q |
221 |
catcaaataactgtgctaaaggatgaaccttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttccaag |
320 |
Q |
| |
|
||||| ||||| ||| |||| ||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16797199 |
catcagataaccgtgttaaatgatgaacataagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttctttccatt |
16797298 |
T |
|
| Q |
321 |
ttgcaacaaagactttaacttattccatttctcttggtcttcactcca |
368 |
Q |
| |
|
| ||||||| ||||| ||| ||||||||||| ||||||| |||||||| |
|
|
| T |
16797299 |
tggcaacaatgacttgaacgtattccatttcacttggtcatcactcca |
16797346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 368
Target Start/End: Original strand, 16787787 - 16788147
Alignment:
| Q |
11 |
catcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaag |
110 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||| |||||| |||||||||||||||||||||||| |
|
|
| T |
16787787 |
catcctcagttaaattccaaaactcactttccagtacagaaatccattgatgttcgtcgcttgtaaatcgcaaactgcttcccaatactttagcagcaag |
16787886 |
T |
|
| Q |
111 |
aggtgaacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagac |
210 |
Q |
| |
|
|| ||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
16787887 |
agttgaacccacacattttctcactaacttcttgcctatttccacaagctctgcacgttcttctctattttctctgaaagcttgttgtttgaacaaagac |
16787986 |
T |
|
| Q |
211 |
cagatgtcatcatcaaataactgtgctaaaggatgaac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcac |
307 |
Q |
| |
|
||||||||| |||| |||| ||| |||| ||||| | | |||| ||||||||||||||||||| ||||||| | |||||||||||||||||||| |
|
|
| T |
16787987 |
cagatgtcagaatcagataagcgtgttaaacgatgagcatgataagttgccatgatggatgcaacaatgtcaagtcgtgcagtgaccaaaattgatgcac |
16788086 |
T |
|
| Q |
308 |
ctttctttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactcca |
368 |
Q |
| |
|
||||| || || ||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
16788087 |
ctttcgtttcatattgcaacaaagacttgaacttattccatttctcttggtcttcattcca |
16788147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 11 - 368
Target Start/End: Original strand, 16987274 - 16987634
Alignment:
| Q |
11 |
catcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaag |
110 |
Q |
| |
|
|||| |||| ||||||||||| ||||||||||| |||||||||||||||||||| || ||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
16987274 |
catcctcaggtaaattccaaatctcactttccagtacagaaatccattgatgttcgtcagtttcacgttgcaaactgcttcccaatactttagcagcaag |
16987373 |
T |
|
| Q |
111 |
aggtgaacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagac |
210 |
Q |
| |
|
||||||||||||| |||||||||| ||||| | |||||||||||||||||||||||| |||||| |||| |||| ||||| |||||||||||||||||| |
|
|
| T |
16987374 |
aggtgaacccacaaattttctcaccaacttcttacctatttccacaagctctgcacgctcttctccattttctccgaaagcttgttgtttgaacaaagac |
16987473 |
T |
|
| Q |
211 |
cagatgtcatcatcaaataactgtgctaaaggatgaac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcac |
307 |
Q |
| |
|
||||||| ||||||| |||| | ||||||||| | | |||||||||||||||||||||| | ||||||||||| |||||||||| |||||||| |
|
|
| T |
16987474 |
cagatgtgatcatcagataagccgaccaaaggatgagcaggataagttcccatgatggatgcaacattgtcaagtctggtggtgaccaaaactgatgcac |
16987573 |
T |
|
| Q |
308 |
ctttctttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactcca |
368 |
Q |
| |
|
||||| ||| | |||||||| |||||| |||||||||||||||||| |||||||| |||| |
|
|
| T |
16987574 |
ctttcgttctattttgcaacacagacttgaacttattccatttctctcggtcttcagtcca |
16987634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 368
Target Start/End: Complemental strand, 18806522 - 18806171
Alignment:
| Q |
26 |
tccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacaca |
125 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||||||| || |||||||||||||||||||||| | |||||| || |||||||||||||||||||| |
|
|
| T |
18806522 |
tccaaaacttactttcctttacagaaagccattgatgttcctcagttttaaagcgcaaaaggcttcctagtacttttgcggcaagaggtgaacccacaca |
18806423 |
T |
|
| Q |
126 |
ttttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagatgtcatcatca |
225 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||||||||| ||| |||||||||||| | ||||||| | |||||| |||||| ||||||| |||||||| |
|
|
| T |
18806422 |
ttttctcactaactccttgcctattgccacaagctctgctcgctcttctctatttgtttcaaaagctttttgtttaaacaaataccagattgcatcatca |
18806323 |
T |
|
| Q |
226 |
aataactgtgctaaaggatgaac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc------tttc |
316 |
Q |
| |
|
|||| | ||| ||||| | | |||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
18806322 |
gataagcctaacaaatgatgagcaggataagttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaattgatgcacctttcgtgccatttc |
18806223 |
T |
|
| Q |
317 |
caagttgcaacaaagactttaacttattccatttctcttggtcttcactcca |
368 |
Q |
| |
|
|| |||||| ||| |||| |||| |||||||||||||||||||||| |||| |
|
|
| T |
18806222 |
cacgttgcagaaaatacttgaactgattccatttctcttggtcttcattcca |
18806171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 368
Target Start/End: Complemental strand, 18873516 - 18873165
Alignment:
| Q |
26 |
tccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacaca |
125 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||||||| || |||||||||||||||||||||| | |||||| || |||||||| ||||||||||| |
|
|
| T |
18873516 |
tccaaaacttactttcctttacagaaagccattgatgttcctcagttttaaagcgcaaaaggcttcctagtacttttgcggcaagaggagaacccacaca |
18873417 |
T |
|
| Q |
126 |
ttttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagatgtcatcatca |
225 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||||||||||||| |||||||||||| | ||||||| | |||||| |||||| |||||||| |||||||| |
|
|
| T |
18873416 |
ttttctcactaactccttgcctattgccacaagctctgcacgctcttctctatttgtttcaaaagctttttgtttaaacaaataccagatggcatcatca |
18873317 |
T |
|
| Q |
226 |
aataactgtgctaaaggatgaac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc------tttc |
316 |
Q |
| |
|
|||| | ||| ||||| | | |||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
18873316 |
gataagcctaacaaatgatgagcaggataagttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaactgatgcacctttcgtgccatttc |
18873217 |
T |
|
| Q |
317 |
caagttgcaacaaagactttaacttattccatttctcttggtcttcactcca |
368 |
Q |
| |
|
|| |||||| ||| |||| |||| |||||||||||||||||||||| |||| |
|
|
| T |
18873216 |
cacgttgcagaaaatacttgaactgattccatttctcttggtcttcattcca |
18873165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 16780924 - 16781223
Alignment:
| Q |
16 |
tcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtg |
115 |
Q |
| |
|
|||| ||| ||||||| |||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||| || || |||||||| |||| |
|
|
| T |
16780924 |
tcagataacttccaaagctcactttcctttacagaaagccattgatgttcctcatttttaaagcgcaaaaggcttcccaaaaccttggcagcaagtggtg |
16781023 |
T |
|
| Q |
116 |
aacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagat |
215 |
Q |
| |
|
|||||||||||||| |||||| || | ||||||| | ||||||||||| || |||| | ||| | ||||||||| |||||||| || || | ||| || |
|
|
| T |
16781024 |
aacccacacattttatcactatctccttgcctattgctgcaagctctgcaggctcttccccattaggtccaaaagcgtgttgtttaaataatgtccaaat |
16781123 |
T |
|
| Q |
216 |
gtcatcatcaaataactgtgctaaaggatgaac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc |
312 |
Q |
| |
|
||| || ||| |||| | | ||| | ||| | | |||||||||||||||||||||||| ||||||| || ||||| ||||| |||| ||||||| |
|
|
| T |
16781124 |
gtcgtcgtcatataaacctaccaaatggtgagcagggtgagttcccatgatggatgcaacaatatcaagtcgtgttgtgactaaaatagatgaacctttc |
16781223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 16843627 - 16843828
Alignment:
| Q |
15 |
atcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggt |
114 |
Q |
| |
|
||||| ||||||||||| |||||||||| | ||||| ||||||| ||| || ||||||| |||| ||||||||| | |||||| ||||||||||| |
|
|
| T |
16843627 |
atcagataaattccaaatctcactttcctttatagaaagccattgacattcctcagttttaaaccgcagaaggcttcctagtactttggcagcaagaggc |
16843726 |
T |
|
| Q |
115 |
gaacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccaga |
214 |
Q |
| |
|
||||||||||||||||| |||| || | |||||| ||||| |||||||| ||||||| | ||||||||||| ||||| |||||||||||||||| |
|
|
| T |
16843727 |
gaacccacacattttctaactatctccttacctattgttacaaggtctgcacgttcttctctttcagctccaaaagcgtgttgcttgaacaaagaccaga |
16843826 |
T |
|
| Q |
215 |
tg |
216 |
Q |
| |
|
|| |
|
|
| T |
16843827 |
tg |
16843828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 12674 - 13029
Alignment:
| Q |
16 |
tcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtg |
115 |
Q |
| |
|
|||| |||| |||||||||||||||| | |||||||||||||||||||| || ||| |||||| |||| |||||| |||||||||||||||||||||| |
|
|
| T |
12674 |
tcaggtaaactccaaaactcactttctagtacagaaatccattgatgttcgtcacttgtaaagcacaaactgcttcctaatactttagcagcaagaggtg |
12773 |
T |
|
| Q |
116 |
aacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagat |
215 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
12774 |
aacccacacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctatttgctacaaaagcttgttgtttgaacaaagaccagat |
12873 |
T |
|
| Q |
216 |
gtcatcatcaaataactgtgctaaaggatgaacct---tagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc |
312 |
Q |
| |
|
|||||||||| |||| ||||||| ||||| | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12874 |
gtcatcatcagataagcttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttc |
12973 |
T |
|
| Q |
313 |
tttccaagttgcaacaaagactttaacttattccatttctcttggtcttcactcca |
368 |
Q |
| |
|
|||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12974 |
tttccatgttgcaacgaagacttgaacttattccatttctcttggtcttcactcca |
13029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 22 - 368
Target Start/End: Original strand, 8338 - 8687
Alignment:
| Q |
22 |
aaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaaccca |
121 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||| | |||| || ||| |||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8338 |
aaattccaaaattcactttccagtacagaaatccattgatgttcgttgcttgtacagcacaaactgctacccaatactttagcagcaagaggtgaaccca |
8437 |
T |
|
| Q |
122 |
cacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagatgtcatc |
221 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8438 |
cacattttctcactaactttttgcctattgccacaagctctgcacgctcttctcgattttctccaaaagcttgttgtttgaacaaagaccagatgtcatc |
8537 |
T |
|
| Q |
222 |
atcaaataactgtgctaaaggatgaacct---tagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttctttcca |
318 |
Q |
| |
|
|||| |||| ||||||| ||||| | | |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8538 |
atcagataagcttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttctttcca |
8637 |
T |
|
| Q |
319 |
agttgcaacaaagactttaacttattccatttctcttggtcttcactcca |
368 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
8638 |
tttagcaacaaagactttaacttattccatttctctttgtcttcagtcca |
8687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 17880 - 18094
Alignment:
| Q |
16 |
tcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtg |
115 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||||| |||||||||||| || ||||||||||||| |||||||||||| || || ||||||||||||| |
|
|
| T |
17880 |
tcagataaattccaaacctcactttcctttacagaaagccattgatgttcctcacttttaaagcgcagaaggcttcccaaaaccttggcagcaagaggtg |
17979 |
T |
|
| Q |
116 |
aacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagat |
215 |
Q |
| |
|
||||||| ||||||||||||| || | |||||| | |||||||||| ||| | || | ||||| ||||| |||||||||||| || || ||||| || |
|
|
| T |
17980 |
aacccacgcattttctcactatctccttacctattgctgcaagctctgcgcgctcctccccatttggtccaacagcatgttgtttaaataatgaccaaat |
18079 |
T |
|
| Q |
216 |
gtcatcatcaaataa |
230 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
18080 |
gtcatcatcatataa |
18094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 26 - 368
Target Start/End: Original strand, 4507 - 4859
Alignment:
| Q |
26 |
tccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaa-ggcttcccaatactttagcagcaagaggtgaacccacac |
124 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||||||| || |||||||||||||||| ||||||| | |||||| ||||||||||| |||||||||| |
|
|
| T |
4507 |
tccaaaacttactttcctttacagaaagccattgatgttcctcacttttaaagcgcaaaaaggcttcctagtactttggcagcaagaggcgaacccacac |
4606 |
T |
|
| Q |
125 |
attttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagatgtcatcatc |
224 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||||||||||||| |||||||||||| | ||||||| | |||||| |||||| |||||||| ||||||| |
|
|
| T |
4607 |
attttctcactaactccttgcctattgccacaagctctgcacgctcttctctatttgtttcaaaagctttttgtttaaacaaataccagatggcatcatc |
4706 |
T |
|
| Q |
225 |
aaataactgtgctaaaggatgaac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc------ttt |
315 |
Q |
| |
|
| |||| | ||| ||||| | | |||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||| ||| |
|
|
| T |
4707 |
agataagcctaacaaatgatgagcaggataagttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaactgatgcacctttcgtgccattt |
4806 |
T |
|
| Q |
316 |
ccaagttgcaacaaagactttaacttattccatttctcttggtcttcactcca |
368 |
Q |
| |
|
||| |||||| ||| |||| |||| |||||||||||||||||||||| |||| |
|
|
| T |
4807 |
ccacgttgcagaaaatacttgaactgattccatttctcttggtcttcattcca |
4859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 46 - 368
Target Start/End: Original strand, 9208 - 9539
Alignment:
| Q |
46 |
acagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcactaacttttggc |
145 |
Q |
| |
|
||||||| |||||||||||| || ||||||||||||||||| ||||| | |||||| || |||||||| ||||||||||||||||||||||||| | || |
|
|
| T |
9208 |
acagaaagccattgatgttcctcacttttaaagcgcaaaagacttcctagtactttggcggcaagaggcgaacccacacattttctcactaactccttgc |
9307 |
T |
|
| Q |
146 |
ctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagatgtcatcatcaaataactgtgctaaaggatg |
245 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||| | ||||||| | |||||| |||||| |||||||| |||||||| |||| | ||| |||| |
|
|
| T |
9308 |
ctattgccacaagctctgcacgctcttctctatttgtttcaaaagctttttgtttaaacaaataccagatggcatcatcagataagcctaacaaatgatg |
9407 |
T |
|
| Q |
246 |
aac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc------tttccaagttgcaacaaagacttt |
336 |
Q |
| |
|
| | | |||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||| |||||| |||||| ||| |||| |
|
|
| T |
9408 |
agcaggataagttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaactgatgcacctttcgtgccatttccacgttgcagaaaatacttg |
9507 |
T |
|
| Q |
337 |
aacttattccatttctcttggtcttcactcca |
368 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| |
|
|
| T |
9508 |
aactgattccatttctcttggtcttcaatcca |
9539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 38939695 - 38939396
Alignment:
| Q |
16 |
tcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtg |
115 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||||| |||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38939695 |
tcagataaattccaaagctcactttcctttacagaaaaccattgatgttcctcacttttaaagcgcaaaaggcttcccaatactttggcagcaagaggtg |
38939596 |
T |
|
| Q |
116 |
aacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagat |
215 |
Q |
| |
|
||||||||||||||||||||| || | ||||||| | |||||||||||| || |||| | || || |||||||||||||||||| || || ||||| || |
|
|
| T |
38939595 |
aacccacacattttctcactatctccttgcctattgctacaagctctgcatgctcttccccatctggtccaaaagcatgttgtttaaataatgaccaaat |
38939496 |
T |
|
| Q |
216 |
gtcatcatcaaataactgtgctaaaggatgaac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc |
312 |
Q |
| |
|
||| |||||| |||| | | ||| | ||| | | |||||||||||||||||||||||||||||||| || ||||| ||||| ||||| |||||| |
|
|
| T |
38939495 |
gtcgtcatcatataaacctaccaaatggtgagcagggtgagttcccatgatggatgcaacaatctcaagtcgtgttgtgactaaaatagatgcccctttc |
38939396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 7053602 - 7053303
Alignment:
| Q |
16 |
tcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtg |
115 |
Q |
| |
|
|||| |||||||||||||| |||||| | ||||| ||||||||||| || | |||||| || ||||||||||| |||||||| || |||||||||| |
|
|
| T |
7053602 |
tcagataaattccaaaacttgctttcctttatagaaagccattgatgtttctcacgtttaaatcgtaaaaggcttcctaatacttttgctgcaagaggtg |
7053503 |
T |
|
| Q |
116 |
aacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagat |
215 |
Q |
| |
|
||||||||||||||||||||| || | ||||||| ||||||||||| || |||||| ||||| |||||||| | ||||||||||||| ||| || |
|
|
| T |
7053502 |
aacccacacattttctcactatctccttgcctattgtggcaagctctgcatgctcttctccatttggtccaaaagtacagtgtttgaacaaaggccaaat |
7053403 |
T |
|
| Q |
216 |
gtcatcatcaaataactgtgctaaaggatga---accttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc |
312 |
Q |
| |
|
|||||||||| |||| | ||||| ||||| | |||||||||||| ||||||||||| |||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
7053402 |
gtcatcatcagataaacctactaaaagatgacggggttgagttcccatgatagatgcaacaatttcaagtcttgtagtgactaaaattgatgaacctttc |
7053303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 13377916 - 13378207
Alignment:
| Q |
16 |
tcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtg |
115 |
Q |
| |
|
|||| ||||||||||| || ||||||| ||||||| |||||||||||| || |||||||||||| ||||||||||||| || || ||||||||||||| |
|
|
| T |
13377916 |
tcagataaattccaaagcttactttcctttacagaaagccattgatgttcctcacttttaaagcgcgaaaggcttcccaaaaccttggcagcaagaggtg |
13378015 |
T |
|
| Q |
116 |
aacccacacattttctcactaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaaagaccagat |
215 |
Q |
| |
|
||||||||||||||||||||| || | ||||||| | |||||||||||||| |||| | ||| | ||||| ||||||| |||| ||||||||||| || |
|
|
| T |
13378016 |
aacccacacattttctcactatctccttgcctattgctgcaagctctgcacgctcttccccattaggtccaatagcatgtagtttaaacaaagaccaaat |
13378115 |
T |
|
| Q |
216 |
gtcatcatcaaataactgtgctaaaggatgaac---cttagttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatg |
304 |
Q |
| |
|
||| |||||| ||| | | ||| ||||| | | |||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
13378116 |
gtcttcatcatgtaatcctaccaaatgatgagcagggtgagttcccatgatggatgcaacaatctcaagtcgcgtagtgactaaaattgatg |
13378207 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 8971 - 9094
Alignment:
| Q |
11 |
catcatcagctaaattccaaaactcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaag |
110 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||| ||||| | |||||||||||| || |||||||||| |||||| |||||||||||||| |||||||| |
|
|
| T |
8971 |
catcctcagttaaattccaaagctcactttccttgacagagagccattgatgttcctcacttttaaagcacaaaagacttcccaatactttggcagcaag |
9070 |
T |
|
| Q |
111 |
aggtgaacccacacattttctcac |
134 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
9071 |
aggtgaacccacacattttctcac |
9094 |
T |
|
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Target: scaffold0256; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 9208 - 9268
Alignment:
| Q |
252 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc |
312 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||||| ||||| |||||||||||| |
|
|
| T |
9208 |
agttcccatgatggatgcaacaatatcaagtcgtgttgtgactaaaatagatgcacctttc |
9268 |
T |
|
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 30207085 - 30207146
Alignment:
| Q |
145 |
cctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaa |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||| |||| |||||||||||| |
|
|
| T |
30207085 |
cctatttccacaagctctgcacgctcttctctattttgtccaaatgcatattgtttgaacaa |
30207146 |
T |
|
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