View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1615_low_4 (Length: 322)
Name: NF1615_low_4
Description: NF1615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1615_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 47212526 - 47212819
Alignment:
| Q |
18 |
aattgtactaggaatcaaagtgaaggatcattctgaggaactctcaaaagggtatgcagctcttgtagttgttatggtttgtatttttgtgtcagcattt |
117 |
Q |
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| T |
47212526 |
aattgtactaggaatcaaagtgaaggatcattctgaggaactctcaaaagggtatgcagctcttgtagttgttatggtttgtatttttgtgtcagcattt |
47212625 |
T |
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| Q |
118 |
gcatggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagtgtaacagtttgtgtcaacttcc |
217 |
Q |
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| T |
47212626 |
gcatggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagtgtaacagtttgtgtcaacttcc |
47212725 |
T |
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| Q |
218 |
tcttcactgctgtcattgcacaagctttcctttcaatgctttgctatttcaagtttggtatcttctttttcttctctggttggatcttgttcat |
311 |
Q |
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| T |
47212726 |
tcttcactgctgtcattgcacaagctttcctttcaatgctttgctatttcaagtttggtatcttctttttcttctctggttggatcttgttcat |
47212819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 47185995 - 47186077
Alignment:
| Q |
115 |
tttgcatggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagtgt |
197 |
Q |
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| T |
47185995 |
tttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgt |
47186077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 47198534 - 47198616
Alignment:
| Q |
115 |
tttgcatggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagtgt |
197 |
Q |
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| T |
47198534 |
tttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgt |
47198616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 106 - 296
Target Start/End: Complemental strand, 748677 - 748487
Alignment:
| Q |
106 |
gtgtcagcatttgcatggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagtgtaacagttt |
205 |
Q |
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| T |
748677 |
gtgtctgcctttgcttggtcttggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctggacaaagtgtcacagttt |
748578 |
T |
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| Q |
206 |
gtgtcaacttcctcttcactgctgtcattgcacaagctttcctttcaatgctttgctatttcaagtttggtatcttctttttcttctctgg |
296 |
Q |
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| T |
748577 |
gtgtcaacatgttgttcacctttgtcattgctcaggcttttctatctatgttatgccacttcaagtttggaatcttcttgttcttctctgg |
748487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 41414096 - 41414021
Alignment:
| Q |
120 |
atggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagt |
195 |
Q |
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| T |
41414096 |
atggtcatggggtcctcttggttggacaattccaagtgagatatttccattagaaatccgttcagcagggcaaagt |
41414021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 36202701 - 36202786
Alignment:
| Q |
114 |
atttgcatggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagtgtaa |
199 |
Q |
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| T |
36202701 |
atttgcttggtcatggggtcctcttggttggttggttcctagtgagattttcccattggagattcgttctgcagctcaaagtgtaa |
36202786 |
T |
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