View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1615_low_9 (Length: 232)
Name: NF1615_low_9
Description: NF1615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1615_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 24 - 232
Target Start/End: Complemental strand, 42996309 - 42996102
Alignment:
| Q |
24 |
atatttaatatttgcgtgcgtcattcaatagaagattatttattcttattatattgtttcatgtatgtattgactaagtcatgcacnnnnnnnactattc |
123 |
Q |
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| T |
42996309 |
atatttaatatttgcgtgcgtcattcaatagaagattatttattcttattatattgtttcatgtatgtattgactaagtcatgcactttttttactattc |
42996210 |
T |
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| Q |
124 |
ctaaattaatgctactaccgttttcatgcttgactactctctaatgcatgcatgcttcccatattttcaattatatgtttccactatagtatagtagcaa |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| |
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| T |
42996209 |
ctaaattaatgctactaccgttttcatgcttgactactctctaatgcatgcatgcttcccatattttccaat-tatgtttccactatagtatagtagcaa |
42996111 |
T |
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| Q |
224 |
cttcttgta |
232 |
Q |
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| T |
42996110 |
cttcttgta |
42996102 |
T |
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