View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1616-INSERTION-1 (Length: 533)

Name: NF1616-INSERTION-1
Description: NF1616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1616-INSERTION-1
NF1616-INSERTION-1
[»] chr2 (6 HSPs)
chr2 (7-524)||(32703756-32704279)
chr2 (149-230)||(17882966-17883046)
chr2 (149-258)||(31449995-31450104)
chr2 (224-270)||(17152179-17152225)
chr2 (148-209)||(19920067-19920127)
chr2 (140-196)||(19541137-19541193)
[»] chr4 (10 HSPs)
chr4 (149-312)||(53001146-53001308)
chr4 (155-272)||(20044202-20044319)
chr4 (149-271)||(13275712-13275834)
chr4 (141-202)||(30624960-30625021)
chr4 (148-196)||(16442225-16442273)
chr4 (140-206)||(10576543-10576609)
chr4 (224-256)||(4732790-4732822)
chr4 (149-181)||(9526811-9526843)
chr4 (156-256)||(24042333-24042433)
chr4 (140-256)||(26159796-26159912)
[»] chr8 (3 HSPs)
chr8 (143-270)||(10867014-10867141)
chr8 (205-314)||(28831761-28831870)
chr8 (143-270)||(29291797-29291923)
[»] chr6 (4 HSPs)
chr6 (150-209)||(12878076-12878135)
chr6 (158-256)||(23946819-23946917)
chr6 (140-198)||(24617609-24617667)
chr6 (264-316)||(33559919-33559971)
[»] chr7 (3 HSPs)
chr7 (132-256)||(10253691-10253815)
chr7 (148-239)||(5214038-5214127)
chr7 (149-203)||(23804331-23804384)
[»] chr1 (2 HSPs)
chr1 (224-270)||(18391108-18391154)
chr1 (217-270)||(21548674-21548727)
[»] chr3 (3 HSPs)
chr3 (217-270)||(21829168-21829221)
chr3 (187-272)||(26775079-26775163)
chr3 (141-198)||(28206096-28206152)
[»] scaffold0007 (1 HSPs)
scaffold0007 (129-203)||(218041-218114)
[»] scaffold0113 (1 HSPs)
scaffold0113 (141-198)||(47780-47837)
[»] chr5 (4 HSPs)
chr5 (154-203)||(11841262-11841310)
chr5 (217-270)||(24410965-24411018)
chr5 (140-245)||(30790827-30790932)
chr5 (140-196)||(26070574-26070630)


Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 7 - 524
Target Start/End: Original strand, 32703756 - 32704279
Alignment:
Q  7 actctatctatagatattttttcagttgtgtttaaattata----attatgagttttttctcccagtccattaagtagaaatccgcataaatccgatttt 102  Q
    |||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  32703756 actctatctatagatattttttcagttgtgtttaaattatatataattatgagttttttctcccagtccactaagtagaaatccgcataaatccaatttt 32703855  T
Q  103 acccgcatagaatgtgtgtagagatgtcttccatgaaatgtcttattttgccgaattacataatttatcaataaaaagattcaaaacacttatgaaattg 202  Q
    ||| ||| |||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  32703856 acctgcacagaatgcgtgtagagatgtcttccatgagatgtcttgttttgcggaattacataatttatcaataaaaagattcaaaacacttatgaagttg 32703955  T
Q  203 tatagttagagaagaaactggattacaacgactcaaatgaaaataatataaaatatgtctcaaaccatgagcaaataatctaaaaatcctctgaattgtc 302  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  32703956 tatagttagagaagaaaccggattacaacgactcaaatgaaaataatacaaaatatgtcttaaaccatgagcaaataatctaaaaatcctatgaattgtc 32704055  T
Q  303 ttcaaatgcttattgaaaatgacctacaaacatgtctaaacatcatacaatgaggtattaccaatcctcttggtattatggtcaatcatcatactcctcg 402  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  32704056 ttcaaatgcttattaaaaatgacctacaaacatatctaaacatcatacgatgaggtgttaccgatcctcttggtattatggtcaatcatcatactcctcg 32704155  T
Q  403 tcacccactttaggaagtcaactgatgcaactatattttcgtaatcgactatctctggacaagttggaaaattagagacattttcac-tattagttatgg 501  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  32704156 tcacccactttaggaagtcaactgatgcaactatatttttgtactcgactatctctggacaagttggaatattagagacattttcacttattagttatgg 32704255  T
Q  502 gtcat-atcacatagcattggtgt 524  Q
    ||||| ||||||||||||||||||    
T  32704256 gtcatgatcacatagcattggtgt 32704279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 17883046 - 17882966
Alignment:
Q  149 tttgccgaattacataatttatcaataaaaagattcaaaacacttatgaaattgtatagttagagaagaaactggattacaa 230  Q
    ||||||||||||||| |||||||||| |||||| ||||||||  ||||||||||| | ||| || ||||||| | |||||||    
T  17883046 tttgccgaattacatgatttatcaat-aaaagactcaaaacaactatgaaattgtctggtttgaaaagaaaccgaattacaa 17882966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 31450104 - 31449995
Alignment:
Q  149 tttgccgaattacataatttatcaataaaaagattcaaaacacttatgaaattgtatagttagagaagaaactggattacaacgactcaaatgaaaataa 248  Q
    |||||||||| |||| ||||||||||||||| | ||||||||| ||| || ||| ||| |||  ||| ||||||  ||| || ||||| |||||||| ||    
T  31450104 tttgccgaatcacatgatttatcaataaaaatactcaaaacacctataaagttgcataattaaggaataaactgatttataatgactctaatgaaaaaaa 31450005  T
Q  249 tataaaatat 258  Q
    || |||||||    
T  31450004 tacaaaatat 31449995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 17152225 - 17152179
Alignment:
Q  224 attacaacgactcaaatgaaaataatataaaatatgtctcaaaccat 270  Q
    ||||||||||||| ||||||||||||| |||||||  ||||||||||    
T  17152225 attacaacgactcgaatgaaaataatacaaaatattcctcaaaccat 17152179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 19920067 - 19920127
Alignment:
Q  148 ttttgccgaattacataatttatcaataaaaagattcaaaacacttatgaaattgtatagtt 209  Q
    |||| ||||||||||| |||| ||||||| || ||||||||||| ||||||||||| |||||    
T  19920067 tttttccgaattacatgatttttcaataataa-attcaaaacacctatgaaattgtttagtt 19920127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 19541193 - 19541137
Alignment:
Q  140 atgtcttattttgccgaattacataatttatcaataaaaagattcaaaacacttatg 196  Q
    ||||||||||||||||| |||||| |||| ||| || ||||| ||||||||| ||||    
T  19541193 atgtcttattttgccgatttacatgatttctcactagaaagactcaaaacacctatg 19541137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 149 - 312
Target Start/End: Original strand, 53001146 - 53001308
Alignment:
Q  149 tttgccgaattacataatttatcaataaaaagattcaaaacacttatgaaattgtatagttagagaagaaactggattacaacgactcaaatgaaaataa 248  Q
    |||||||||||||||| | ||||| |||||||||| |||||||||||||| ||||||  ||||  ||||||||  ||||||| || || |||||||||||    
T  53001146 tttgccgaattacata-tgtatcattaaaaagattaaaaacacttatgaagttgtatgattaggaaagaaactaaattacaatgaatcgaatgaaaataa 53001244  T
Q  249 tataaaatatgtctcaaaccatgagcaaataatctaaaaatcctctgaattgtcttcaaatgct 312  Q
    ||||||||||   ||||||||||| ||| |  ||||||   ||||| | |||||||||||||||    
T  53001245 tataaaatatccttcaaaccatgaacaactcctctaaattacctctaagttgtcttcaaatgct 53001308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 20044319 - 20044202
Alignment:
Q  155 gaattacataatttatcaataaaaagattcaaaacacttatgaaattgtatagttagagaagaaactggattacaacgactcaaatgaaaataatataaa 254  Q
    ||||||||| |||| |||||||||||| |||||| || |||| | ||| ||  |||  ||||||| || ||||||| ||||| |||||||| ||||||||    
T  20044319 gaattacatgatttttcaataaaaagactcaaaatacatatggagttgcatgattaaggaagaaattgaattacaatgactcgaatgaaaacaatataaa 20044220  T
Q  255 atatgtctcaaaccatga 272  Q
    || | |||| ||||||||    
T  20044219 atgtctctcgaaccatga 20044202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 271
Target Start/End: Original strand, 13275712 - 13275834
Alignment:
Q  149 tttgccgaattacataatttatcaataaaaagattcaaaacacttatgaaattgtatagttagagaagaaactggattacaacgactcaaatgaaaataa 248  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||| ||   | ||||||  || | || |||| || |||| |||||||| |||||||| ||    
T  13275712 tttgccgaattacatgatttagcaataaaaagactcaaaacacctacagagttgtatgatttgggatgaaagtgaattataacgactcgaatgaaaacaa 13275811  T
Q  249 tataaaatatgtctcaaaccatg 271  Q
    || || || | ||||||||||||    
T  13275812 tacaacatgtttctcaaaccatg 13275834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 30625021 - 30624960
Alignment:
Q  141 tgtcttattttgccgaattacataatttatcaataaaaagattcaaaacacttatgaaattg 202  Q
    ||||||| ||||  ||||||||| |||| |||||||||||| ||||||||| ||||||||||    
T  30625021 tgtcttactttgtagaattacatgatttttcaataaaaagactcaaaacacctatgaaattg 30624960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 16442225 - 16442273
Alignment:
Q  148 ttttgccgaattacataatttatcaataaaaagattcaaaacacttatg 196  Q
    |||| ||||||||||| |||||||| |||||||| ||||||||||||||    
T  16442225 ttttaccgaattacatgatttatcattaaaaagagtcaaaacacttatg 16442273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 10576609 - 10576543
Alignment:
Q  140 atgtcttattttgccgaattacataatttatcaataaaaagattcaaaacacttatgaaattgtata 206  Q
    ||||||| |||| |||| ||||||||||| ||| || ||||| ||||||||| |||||| |||||||    
T  10576609 atgtcttgtttttccgatttacataatttctcactagaaagaatcaaaacacctatgaagttgtata 10576543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 4732822 - 4732790
Alignment:
Q  224 attacaacgactcaaatgaaaataatataaaat 256  Q
    |||||||||||||||||||||| ||||||||||    
T  4732822 attacaacgactcaaatgaaaacaatataaaat 4732790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 9526811 - 9526843
Alignment:
Q  149 tttgccgaattacataatttatcaataaaaaga 181  Q
    |||||||||||||||||| ||||||||||||||    
T  9526811 tttgccgaattacataatatatcaataaaaaga 9526843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 256
Target Start/End: Original strand, 24042333 - 24042433
Alignment:
Q  156 aattacataatttatcaataaaaagattcaaaacacttatgaaattgtatagttagagaagaaactggattacaacgactcaaatgaaaataatataaaa 255  Q
    |||||| | |||||||| |||||| | ||||||||| ||||||||||| ||||||   ||||||    ||||||| ||||||||| |||| |||| ||||    
T  24042333 aattacgtgatttatcagtaaaaaaactcaaaacacctatgaaattgtctagttatgaaagaaatgaaattacaatgactcaaatcaaaacaatacaaaa 24042432  T
Q  256 t 256  Q
    |    
T  24042433 t 24042433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 256
Target Start/End: Complemental strand, 26159912 - 26159796
Alignment:
Q  140 atgtcttattttgccgaattacataatttatcaataaaaagattcaaaacacttatgaaattgtatagttagagaagaaactggattacaacgactcaaa 239  Q
    ||||||| |||||| ||  ||||| |||| ||| |||||||| ||||||||| |||||| ||| ||| ||   ||  |||||  ||||||||||||| ||    
T  26159912 atgtcttgttttgctgatctacatgatttttcactaaaaagactcaaaacacatatgaagttggataatttaggacaaaactaaattacaacgactcgaa 26159813  T
Q  240 tgaaaataatataaaat 256  Q
    |||||| |||| |||||    
T  26159812 tgaaaacaatacaaaat 26159796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 143 - 270
Target Start/End: Complemental strand, 10867141 - 10867014
Alignment:
Q  143 tcttattttgccgaattacataatttatcaataaaaagattcaaaacacttatgaaattgtatagttagagaagaaactggattacaacgactcaaatga 242  Q
    |||| ||||||||| |||||| |||| ||| |||||||||||||| ||| | || | ||| ||  || ||||  |||||| |||||||||||||||||||    
T  10867141 tcttgttttgccgacttacatgatttctcactaaaaagattcaaagcacctttggagttgcatgatttgagataaaactgaattacaacgactcaaatga 10867042  T
Q  243 aaataatataaaatatgtctcaaaccat 270  Q
    ||| |||| |||||||  ||||||||||    
T  10867041 aaacaatacaaaatattcctcaaaccat 10867014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 28831870 - 28831761
Alignment:
Q  205 tagttagagaagaaactggattacaacgactcaaatgaaaataatataaaatatgtctcaaaccatgagcaaataatctaaaaatcctctgaattgtctt 304  Q
    ||||||| ||||||||   ||||||||||||||||| |||||||||  || | |  || ||| ||||||||| | |||||||| || |||  ||||||||    
T  28831870 tagttagggaagaaacaaaattacaacgactcaaatcaaaataatactaattgttccttaaatcatgagcaacttatctaaaactcatctatattgtctt 28831771  T
Q  305 caaatgctta 314  Q
    ||||||||||    
T  28831770 caaatgctta 28831761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 270
Target Start/End: Complemental strand, 29291923 - 29291797
Alignment:
Q  143 tcttattttgccgaattacataatttatcaataaaaagattcaaaacacttatgaaattgtat-agttagagaagaaactggattacaacgactcaaatg 241  Q
    |||| ||||||||| |||||| |||| | | |||||||| |||||| |||||| || ||| || | |||| ||  |||||| ||||||||||||||||||    
T  29291923 tcttgttttgccgatttacatgatttcttactaaaaagactcaaaatacttataaagttgcatgatttag-gataaaactgcattacaacgactcaaatg 29291825  T
Q  242 aaaataatataaaatatgtctcaaaccat 270  Q
    |||| ||||||||| ||  ||||||||||    
T  29291824 aaaa-aatataaaaaattcctcaaaccat 29291797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 12878135 - 12878076
Alignment:
Q  150 ttgccgaattacataatttatcaataaaaagattcaaaacacttatgaaattgtatagtt 209  Q
    |||| ||||||||||||||| ||||||||||||||||||||| ||| ||||||| |||||    
T  12878135 ttgcggaattacataatttagcaataaaaagattcaaaacacctataaaattgtctagtt 12878076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 23946819 - 23946917
Alignment:
Q  158 ttacataatttatcaataaaaagattcaaaacacttatgaaattgtatagttagagaagaaactggattacaacgactcaaatgaaaataatataaaat 256  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||||    || | |||||||  | ||||||| |||||||||||||| |||| |||||    
T  23946819 ttacatgatttatcaataaaaagactcaaaacacttatgaagttgtcggttttgtgaagaaatagaattacaaagactcaaatgaaaacaatacaaaat 23946917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 24617667 - 24617609
Alignment:
Q  140 atgtcttattttgccgaattacataatttatcaataaaaagattcaaaacacttatgaa 198  Q
    ||||||| |||||| || ||||||||||| ||| |||||||| |||||||||| |||||    
T  24617667 atgtcttgttttgctgatttacataatttctcactaaaaagactcaaaacactcatgaa 24617609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 33559971 - 33559919
Alignment:
Q  264 aaaccatgagcaaataatctaaaaatcctctgaattgtcttcaaatgcttatt 316  Q
    ||||||||||||||| |||||||| |||| | |||||| || |||||||||||    
T  33559971 aaaccatgagcaaatcatctaaaactcctataaattgtttttaaatgcttatt 33559919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 256
Target Start/End: Original strand, 10253691 - 10253815
Alignment:
Q  132 tccatgaaatgtcttattttgccgaattacataatttatcaataaaaagattcaaaacacttatgaaattgtatagttagagaagaaactggattacaac 231  Q
    |||||| | ||||||  |||||| ||||| || ||||||||||||||| | ||| ||||  |||||| ||| | | |||| ||||||| ||||||||||     
T  10253691 tccatgtagtgtcttgctttgcccaattatatgatttatcaataaaaataatcagaacaactatgaagttgcacaattagggaagaaattggattacaaa 10253790  T
Q  232 gactcaaatgaaaataatataaaat 256  Q
    ||||| |||||||| |||| |||||    
T  10253791 gactcgaatgaaaacaatacaaaat 10253815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 5214038 - 5214127
Alignment:
Q  148 ttttgccgaattacataatttatcaataaaaagattcaaaacacttatgaaattgtatagttagagaagaaactggattacaacgactcaaa 239  Q
    |||||| ||||||||| ||||||||||||||||| ||  ||||| |||| | |||| | |||| | |||||| || ||||||||||||||||    
T  5214038 ttttgctgaattacatgatttatcaataaaaagactc--aacacatatggagttgtctggttaaaaaagaaattgaattacaacgactcaaa 5214127  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 23804331 - 23804384
Alignment:
Q  149 tttgccgaattacataatttatcaataaaaagattcaaaacacttatgaaattgt 203  Q
    ||||||||||||||| |||| ||| ||||| || |||||||||||||||||||||    
T  23804331 tttgccgaattacatgatttttcactaaaa-gactcaaaacacttatgaaattgt 23804384  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 18391154 - 18391108
Alignment:
Q  224 attacaacgactcaaatgaaaataatataaaatatgtctcaaaccat 270  Q
    ||||||||||||||||||||||||||||||||| |  ||||||||||    
T  18391154 attacaacgactcaaatgaaaataatataaaatgttactcaaaccat 18391108  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 21548727 - 21548674
Alignment:
Q  217 aaactggattacaacgactcaaatgaaaataatataaaatatgtctcaaaccat 270  Q
    |||||| ||||||||||||| |||||||| |||||||||  | |||||||||||    
T  21548727 aaactgaattacaacgactcgaatgaaaacaatataaaaagtttctcaaaccat 21548674  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 21829168 - 21829221
Alignment:
Q  217 aaactggattacaacgactcaaatgaaaataatataaaatatgtctcaaaccat 270  Q
    |||||| ||||||||||||||||||||||||||| ||||| |  ||||||||||    
T  21829168 aaactgaattacaacgactcaaatgaaaataatacaaaatgttcctcaaaccat 21829221  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 26775163 - 26775079
Alignment:
Q  187 aacacttatgaaattgtatagttagagaagaaactggattacaacgactcaaatgaaaataatataaaatatgtctcaaaccatga 272  Q
    ||||| |||||| ||| ||  |||||||||||||||||||| || ||||| |||||||| ||||  ||||||  ||||||||||||    
T  26775163 aacacatatgaagttgcatgattagagaagaaactggattataatgactcgaatgaaaacaata-caaatatccctcaaaccatga 26775079  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 28206096 - 28206152
Alignment:
Q  141 tgtcttattttgccgaattacataatttatcaataaaaagattcaaaacacttatgaa 198  Q
    |||||| |||||||||||||||  |||||| || |||||| |||||||||||||||||    
T  28206096 tgtcttgttttgccgaattacacgatttataaagaaaaag-ttcaaaacacttatgaa 28206152  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 218114 - 218041
Alignment:
Q  129 tcttccatgaaatgtcttattttgccgaattacataatttatcaataaaaagattcaaaacacttatgaaattgt 203  Q
    ||||||||||  |||||||  ||||||||||| ||||||||||||| ||| || ||||||||| | |||||||||    
T  218114 tcttccatgaggtgtcttagcttgccgaattaaataatttatcaat-aaatgactcaaaacacctttgaaattgt 218041  T

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Target: scaffold0113 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 47780 - 47837
Alignment:
Q  141 tgtcttattttgccgaattacataatttatcaataaaaagattcaaaacacttatgaa 198  Q
    |||||| |||||| ||||||||||||| |  |||||||||| ||||||||| ||||||    
T  47780 tgtcttgttttgcggaattacataattaaataataaaaagaatcaaaacacgtatgaa 47837  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 11841310 - 11841262
Alignment:
Q  154 cgaattacataatttatcaataaaaagattcaaaacacttatgaaattgt 203  Q
    ||||||||||||||| ||||| |||||| ||||||||| |||||||||||    
T  11841310 cgaattacataatttttcaat-aaaagactcaaaacacctatgaaattgt 11841262  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 24410965 - 24411018
Alignment:
Q  217 aaactggattacaacgactcaaatgaaaataatataaaatatgtctcaaaccat 270  Q
    |||||| |||||||||||||||||||||| |||| ||||| |  ||||||||||    
T  24410965 aaactgaattacaacgactcaaatgaaaacaatacaaaattttcctcaaaccat 24411018  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 245
Target Start/End: Complemental strand, 30790932 - 30790827
Alignment:
Q  140 atgtcttattttgccgaattacataatttatcaataaaaagattcaaaacacttatgaaattgtatagttagagaagaaactggattacaacgactcaaa 239  Q
    ||||||| | ||||||| ||||||||||| ||| |||||||| |||||||||  ||||| ||| ||| ||   ||  |||||| |||| |||||||||||    
T  30790932 atgtcttgtgttgccgatttacataatttttcactaaaaagactcaaaacaccaatgaagttggataatttaggataaaactgaattataacgactcaaa 30790833  T
Q  240 tgaaaa 245  Q
    | ||||    
T  30790832 taaaaa 30790827  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 26070630 - 26070574
Alignment:
Q  140 atgtcttattttgccgaattacataatttatcaataaaaagattcaaaacacttatg 196  Q
    ||||||| ||||||| | |||||| |||| ||| |||||||| ||||||||||||||    
T  26070630 atgtcttgttttgccaatttacatgatttctcactaaaaagactcaaaacacttatg 26070574  T

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