View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1616-INSERTION-2 (Length: 690)
Name: NF1616-INSERTION-2
Description: NF1616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1616-INSERTION-2 |
 | |
|
| [»] scaffold0511 (2 HSPs) |
| | |
|
| [»] scaffold0230 (2 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0133 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 488; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 8 - 687
Target Start/End: Original strand, 18875306 - 18875985
Alignment:
| Q |
8 |
gaacgaactaacttcccttcgtgaagtggaaatttcgtgctacagtggaaacagccggatgttacagggcttagtagttgtcccctccctacaaaatttg |
107 |
Q |
| |
|
|||| ||||||||||||||||| |||||| ||||||| ||||| || ||||| |||||| ||| ||||||||| |||| |||||||||| ||||||||| |
|
|
| T |
18875306 |
gaacaaactaacttcccttcgtcaagtggcaatttcgggctaccttgcaaacaaccggatattagagggcttagaagttatcccctcccttcaaaatttg |
18875405 |
T |
|
| Q |
108 |
attctagcatactttgattacttgccggaatcgttgggagccatgacttctcttcaaagagtagaaatcatttcatgtactgatgtaaagtttctaccaa |
207 |
Q |
| |
|
| |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||| ||||||| |
|
|
| T |
18875406 |
actctatcattctttgattacttgcctgaatcgttgggagccatgacttctcttcaaagagtagaaatcattttttgtccaaatttaaagtcgctaccaa |
18875505 |
T |
|
| Q |
208 |
atagctttcaaaacctcataaacttgcacacattgcttattgttggatgtcctgtgttggagaaacgatgcaagaaaggaactggggaagattggcaaaa |
307 |
Q |
| |
|
| |||||||||||||||||||||||||| || ||||||||| || ||||| || |||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18875506 |
acagctttcaaaacctcataaacttgcatacgttgcttatttttcgatgttctatgttggtgaaacgatgcaagaaaggaactgggaaagattggcaaaa |
18875605 |
T |
|
| Q |
308 |
gatagctcacgttcctgaattggagttaattgcaaaacccacatactatagtaatatactgaatcccttgcttatttcatctttgtctttatgtagcacc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18875606 |
gatagctcacgttcctgaattggagttaattgcagaagacacatactatagtaatatactgaatcccttgcttatttcatctttgtctttatgtagcacc |
18875705 |
T |
|
| Q |
408 |
gacacttttcttttaaggcttgtcctgatgtctcacacttacaccggaccgacgtatgtagttacattgaatcacttgacttctattttttcaaattatt |
507 |
Q |
| |
|
||||| ||||||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18875706 |
gacacatttcttttaaggcgtatcccgatgtctcacacttacaccgaaccgacgtatgtagttacattgaatcacttgacttctattttctcaaattatt |
18875805 |
T |
|
| Q |
508 |
atcagtgtctaatgtttgtgttagtatcgtgtctaatatccatgtgtcactcagtgcttcatagatcatgtttttctcccaaatgtatgatgatttctga |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18875806 |
atcagtgtctaatgtttgtgttagtatcgtgtctaatatccatgtgtcactcagtgcttcatagatcttgtttttctcccaaatgtatgatgatttctga |
18875905 |
T |
|
| Q |
608 |
catattggaactctagatgcagtgcgtaataggaaggaggaagatagagatattttgcgccgtcgttatcaggctatcga |
687 |
Q |
| |
|
||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18875906 |
catattgaaactcttgatgcagtgcgtaattggaaggaggaagatagagatattttgcgccatcgttatcaggctatcga |
18875985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 562
Target Start/End: Original strand, 18808306 - 18808860
Alignment:
| Q |
8 |
gaacgaactaacttcccttcgtgaagtggaaatttcgtgctacagtggaaacagccggatgttacagggcttagtagttgtcccctccctacaaaatttg |
107 |
Q |
| |
|
|||| ||||||||||||||||| ||| || ||||||||||| |||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
18808306 |
gaacaaactaacttcccttcgtcaagcggcaatttcgtgctgcagtggaaacagccggatattacagggcttagaagttatcccctccctacaaaatttg |
18808405 |
T |
|
| Q |
108 |
attctagcatactttgattacttgccggaatcgttgggagccatgacttctcttcaaagagtagaaatcatttcatgtactgatgtaaagtttctaccaa |
207 |
Q |
| |
|
| |||| |||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
18808406 |
actctatcatactttaatcacttgccggaatcattgggagccatgacttctcttcaaagagtagaaatcatttcgtgtacaaatgtaaagtcgctaccaa |
18808505 |
T |
|
| Q |
208 |
atagctttcaaaacctcataaacttgcacacattgcttattgttggatgtcctgtgttggagaaacgatgcaagaaaggaactggggaagattggcaaaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18808506 |
atagctttcaaaacctcataaacttgcatacattgtctattgttgaatgtcctaagttggagaaacgatgcaagaaaggaactggggaagattggcaaaa |
18808605 |
T |
|
| Q |
308 |
gatagctcacgttcctgaattggagttaattgcaaaacccacatactatagtaatatactgaatcccttgcttatttcatctttgtctttatgtagcacc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18808606 |
gatagctcacgttcctgaattggagttaattacaatatacacatactatagtaatatactgaatcccttgcttatttcatcttgttctttatgtagcacc |
18808705 |
T |
|
| Q |
408 |
gacacttttcttttaaggcttgtcctgatgtctcacacttacaccggaccgacgtatgtagttacattgaatcacttgacttctattttttcaaattatt |
507 |
Q |
| |
|
|||||||| ||||||||||| ||| | |||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
18808706 |
aacacttttgttttaaggcttttcc-ggtgtctcacacttacacgacaccgacaaatgtagttacattaaatcacttgacttctattttctcaaattatt |
18808804 |
T |
|
| Q |
508 |
atcagtgtcta-atgtttgtgttagtatcgtgtctaatatccatgtgtcactcagt |
562 |
Q |
| |
|
|| ||||||| | | ||||| || |||||| |||||||||||||||||||| |
|
|
| T |
18808805 |
atttgtgtctacgtttctgtgtccgtttcgtgttcgatatccatgtgtcactcagt |
18808860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 471 - 653
Target Start/End: Original strand, 18790571 - 18790754
Alignment:
| Q |
471 |
acattgaatcacttgacttctattttttcaaattattatcagtgtctaa-tgtttgtgttagtatcgtgtctaatatccatgtgtcactcagtgcttcat |
569 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| || |||| ||| | ||| |||| ||||| ||||| ||||||||||| |||||||| |
|
|
| T |
18790571 |
acattgaatcacttgacttctattttctcaaattattatgaggatctatgtgtctatgtctgtataatgtctgatatctttgtgtcactcaatgcttcat |
18790670 |
T |
|
| Q |
570 |
agatcatgtttttctcccaaatgtatgatgatttctgacatattggaactctagatgcagtgcgtaataggaaggaggaagata |
653 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| || | ||||| |||| || |||||||| |||||| |
|
|
| T |
18790671 |
agatcttgtttttctcccaaatgtatgatgatttctgacatattggaacgcttggtgcagggcgtgattggaaggagaaagata |
18790754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 634
Target Start/End: Original strand, 18808862 - 18808916
Alignment:
| Q |
580 |
tttctcccaaatgtatgatgatttctgacatattggaactctagatgcagtgcgt |
634 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||| |||| |
|
|
| T |
18808862 |
tttctcccaaatgtatgattatttctgacatattggaactcttaatgcagcgcgt |
18808916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 328
Target Start/End: Complemental strand, 16794981 - 16794927
Alignment:
| Q |
274 |
gatgcaagaaaggaactggggaagattggcaaaagatagctcacgttcctgaatt |
328 |
Q |
| |
|
||||||||| ||||| || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16794981 |
gatgcaagagaggaaaaggtgaagattggcataagatagctcacgttcctgaatt |
16794927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 16836489 - 16836439
Alignment:
| Q |
273 |
cgatgcaagaaaggaactggggaagattggcaaaagatagctcacgttcct |
323 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| |||||||||||| ||||| |
|
|
| T |
16836489 |
cgatgcaagaaagaaacaggggaagattggcacaagatagctcacattcct |
16836439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 16841600 - 16841550
Alignment:
| Q |
273 |
cgatgcaagaaaggaactggggaagattggcaaaagatagctcacgttcct |
323 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| |||||||||||| ||||| |
|
|
| T |
16841600 |
cgatgcaagaaagaaacaggggaagattggcataagatagctcacattcct |
16841550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 16870314 - 16870379
Alignment:
| Q |
263 |
gttggagaaacgatgcaagaaaggaactggggaagattggcaaaagatagctcacgttcctgaatt |
328 |
Q |
| |
|
||||||||| ||||||||| ||||| || ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
16870314 |
gttggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcctgaatt |
16870379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 263 - 325
Target Start/End: Complemental strand, 16655844 - 16655782
Alignment:
| Q |
263 |
gttggagaaacgatgcaagaaaggaactggggaagattggcaaaagatagctcacgttcctga |
325 |
Q |
| |
|
||||||||| ||||||||| ||||| || ||||||||||| |||||||||||| ||||||| |
|
|
| T |
16655844 |
gttggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcctga |
16655782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 312
Target Start/End: Original strand, 17065322 - 17065412
Alignment:
| Q |
222 |
ctcataaacttgcacacattgcttattgttggatgtcctgtgttggagaaacgatgcaagaaaggaactggggaagattggcaaaagatag |
312 |
Q |
| |
|
|||||||||||||| ||||| |||| || ||||||| |||||| || || |||||||||| ||| |||||||||||| ||||||||| |
|
|
| T |
17065322 |
ctcataaacttgcatgaattgcatatttttaaatgtcctatgttggttaagcggtgcaagaaagaaacaggggaagattggtaaaagatag |
17065412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 16785055 - 16784994
Alignment:
| Q |
262 |
tgttggagaaacgatgcaagaaaggaactggggaagattggcaaaagatagctcacgttcct |
323 |
Q |
| |
|
|||||||||| ||||||||| ||||| || ||||||||||| |||||||||||| ||||| |
|
|
| T |
16785055 |
tgttggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct |
16784994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 16836622 - 16836585
Alignment:
| Q |
140 |
gttgggagccatgacttctcttcaaagagtagaaatca |
177 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
16836622 |
gttgggagccatgacttctcttcaaacattagaaatca |
16836585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 16841733 - 16841696
Alignment:
| Q |
140 |
gttgggagccatgacttctcttcaaagagtagaaatca |
177 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
16841733 |
gttgggagccatgacttctcttcaaacattagaaatca |
16841696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 16778958 - 16778898
Alignment:
| Q |
263 |
gttggagaaacgatgcaagaaaggaactggggaagattggcaaaagatagctcacgttcct |
323 |
Q |
| |
|
||||||||| ||||||||| ||||| || ||||||||||| |||||||||||| ||||| |
|
|
| T |
16778958 |
gttggagaagagatgcaagagaggaaaaggtgaagattggcataagatagctcacattcct |
16778898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 18 - 687
Target Start/End: Original strand, 3294 - 3965
Alignment:
| Q |
18 |
acttcccttcgtgaagtggaaatttcgtgctacagtggaaacagccggatgttacagggcttagtagttgtcccctccctacaaaatttgattctagcat |
117 |
Q |
| |
|
|||||||||||| ||||| | ||||| || | || |||||| |||||| ||||||||||||| |||| ||||||||||||||||||||| |||| ||| |
|
|
| T |
3294 |
acttcccttcgtcaagtgaatatttcccactccggtagaaacaaccggatattacagggcttagaagttatcccctccctacaaaatttgactctatcat |
3393 |
T |
|
| Q |
118 |
actttgattacttgccggaatcgttgggagccatgacttctcttcaaagagtagaaatcatttcatgtactgatgtaaagtttctaccaaatagctttca |
217 |
Q |
| |
|
||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
3394 |
actgtgatcacttgccggaatcattgggagccatgacttctcttcaaagagtagaaatcatttcgtgtacaaatgcaaagtcgctaccaaatagctttca |
3493 |
T |
|
| Q |
218 |
aaacctcataaacttgcacacattgcttattgttggatgtcctgtgttggagaaacgatgcaagaaaggaactggggaagattggcaaaagatagctcac |
317 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3494 |
aaatctcataaacttgcatacattgcttattgttggatgttctaagttggagaaacgatgcaagaaaggaactggggaagattggcaaaagatagctcac |
3593 |
T |
|
| Q |
318 |
gttcctgaattggagttaattgcaaaacccacatactatagtaatatactgaatcccttgcttatttcatctttgtctttatgtagcaccgacacttttc |
417 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3594 |
gttcctgaattggagttaattgcaaaaaaaacatactagagtaatatactgaatcccttgcttatttcatc--tgtctttatgtagcaccgacacttttc |
3691 |
T |
|
| Q |
418 |
ttttaaggcttgtcctgatgtctcacacttacaccggaccgacgtatgtagttacattgaatcacttgacttctattttttcaaattattatcagtgtct |
517 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3692 |
ttttaaggcttatcccgatgtctcacacttacaccggaacgacgtatgtagttacattgaatcacttgacttctattttctcaaattattatcagtgtct |
3791 |
T |
|
| Q |
518 |
aatgtttgtgttagtatcgtgtc----taatatccatgtgtcactcagtgcttcatagatcatgtttttctcccaaatgtatgatgatttctgacatatt |
613 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3792 |
aatgtttgtgttagtatcgtgtctaattaatatccatgtgtcactcggtgcttcatagatcatgtttttctcccaaatgtatgatgatttctgacatatt |
3891 |
T |
|
| Q |
614 |
ggaactctagatgcagtgcgtaataggaaggaggaagatagagatattttgcgccgtcgttatcaggctatcga |
687 |
Q |
| |
|
| |||||| ||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
3892 |
gaaactcttgatgcagtgcgtaattggaaggaggaagatagaaatattttgcgccatcgttatcaggctatcga |
3965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 562
Target Start/End: Complemental strand, 7404 - 6850
Alignment:
| Q |
8 |
gaacgaactaacttcccttcgtgaagtggaaatttcgtgctacagtggaaacagccggatgttacagggcttagtagttgtcccctccctacaaaatttg |
107 |
Q |
| |
|
|||| ||||||||||||||||| ||| || ||||||||||| |||||||||||||||||| ||||||||||||| |||| ||||||| |||||||||||| |
|
|
| T |
7404 |
gaacaaactaacttcccttcgtcaagcggcaatttcgtgctgcagtggaaacagccggatattacagggcttagaagttatcccctcgctacaaaatttg |
7305 |
T |
|
| Q |
108 |
attctagcatactttgattacttgccggaatcgttgggagccatgacttctcttcaaagagtagaaatcatttcatgtactgatgtaaagtttctaccaa |
207 |
Q |
| |
|
|||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
7304 |
gctctatcattctttgattacttgcctgaatcgttgggagccatgacttctcttcaaagagtagaaatcatttcgtgtacaaatgtaaagtcgctaccaa |
7205 |
T |
|
| Q |
208 |
atagctttcaaaacctcataaacttgcacacattgcttattgttggatgtcctgtgttggagaaacgatgcaagaaaggaactggggaagattggcaaaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| | ||| ||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7204 |
atagctttcaaaacctcataaacttgcatacatggtctatggttaaatgtcctaagttggagaaacgatccaagaaaggaactggggaagattggcaaaa |
7105 |
T |
|
| Q |
308 |
gatagctcacgttcctgaattggagttaattgcaaaacccacatactatagtaatatactgaatcccttgcttatttcatctttgtctttatgtagcacc |
407 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7104 |
gatagctcacgttcctaaattggagttaattacaatatacacatactatagtattatactgaatcccttgcttatttcatcttgttctttatgtagcacc |
7005 |
T |
|
| Q |
408 |
gacacttttcttttaaggcttgtcctgatgtctcacacttacaccggaccgacgtatgtagttacattgaatcacttgacttctattttttcaaattatt |
507 |
Q |
| |
|
|||||||| ||||||||||| ||| | | |||||||||||||| ||| || ||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
7004 |
aacacttttgttttaaggcttttcc-ggtttctcacacttacacaacaccaacaaatgtagttacattaaatcacttgacttctattttctcaaattatt |
6906 |
T |
|
| Q |
508 |
atcagtgtcta-atgtttgtgttagtatcgtgtctaatatccatgtgtcactcagt |
562 |
Q |
| |
|
|| ||||||| | | ||||| || |||||| |||||||||||||||||||| |
|
|
| T |
6905 |
atttgtgtctacgtttctgtgtccgtttcgtgttcgatatccatgtgtcactcagt |
6850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 8 - 562
Target Start/End: Complemental strand, 2717 - 2162
Alignment:
| Q |
8 |
gaacgaactaacttcccttcgtgaagtggaaatttcgtgctacagtggaaacagccggatgttacagggcttagtagttgtcccctccctacaaaatttg |
107 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
2717 |
gaacaaactaacttcccttcgtcaagtggtaatttcgtgctacagtggaaacagccggatgttacagggcttagaagttatcccctccctacaaaatttg |
2618 |
T |
|
| Q |
108 |
attctagcatactttgattacttgccggaatcgttgggagccatgacttctcttcaaagagtagaaatcatttcatgtactgatgtaaagtttctaccaa |
207 |
Q |
| |
|
| |||| |||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||| |
|
|
| T |
2617 |
actctatcatactttaatcacttgccggaatcattgggagccatgacttctcttcaaagagtagaaatcatttcgtgtacaaatgcaaagtcgctaccaa |
2518 |
T |
|
| Q |
208 |
atagctttcaaaacctcataaacttgcacacattgcttattgttggatg-tcctgtgttggagaaacgatgcaagaaaggaactggggaagattggcaaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||| ||| |||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2517 |
atagctttcaaaacctcataaacttgcatacattgcttatcgttgaatgttcctaagtgggagaaacgatgcaagaaaggaactggggaagattggcaaa |
2418 |
T |
|
| Q |
307 |
agatagctcacgttcctgaattggagttaattgcaaaacccacatactatagtaatatactgaatcccttgcttatttcatctttgtctttatgtagcac |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | | ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
2417 |
agatagctcacgttcctgaattggagttaattaccatatacacctaccatagtaatatactgaatcccttgcttatttcatcttgttctttatgtaggac |
2318 |
T |
|
| Q |
407 |
cgacacttttcttttaaggcttgtcctgatgtctcacacttacaccggaccgacgtatgtagttacattgaatcacttgacttctattttttcaaattat |
506 |
Q |
| |
|
| |||||||| ||||||||||| ||| | |||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
2317 |
caacacttttgttttaaggcttttcc-ggtgtctcacacttacacgacaccgacaaatgtagttacattaaatcacttgacttctattttctcaaattat |
2219 |
T |
|
| Q |
507 |
tatcagtgtcta-atgtttgtgttagtatcgtgtctaatatccatgtgtcactcagt |
562 |
Q |
| |
|
||| ||||||| | | ||||| || |||||| |||||||||||||||||||| |
|
|
| T |
2218 |
tatttgtgtctacgtttctgtgtccgtttcgtgttcgatatccatgtgtcactcagt |
2162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 634
Target Start/End: Complemental strand, 2160 - 2106
Alignment:
| Q |
580 |
tttctcccaaatgtatgatgatttctgacatattggaactctagatgcagtgcgt |
634 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||| |||| |
|
|
| T |
2160 |
tttctcccaaatgtatgattatttctgacatattggaactcttaatgcagcgcgt |
2106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 170; Significance: 7e-91; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 15 - 336
Target Start/End: Original strand, 3929 - 4250
Alignment:
| Q |
15 |
ctaacttcccttcgtgaagtggaaatttcgtgctacagtggaaacagccggatgttacagggcttagtagttgtcccctccctacaaaatttgattctag |
114 |
Q |
| |
|
||||||||||||||| ||| | | || ||||| ||| ||||||||| |||| ||||||||||||| || | ||||||||||||||||||||| ||||| |
|
|
| T |
3929 |
ctaacttcccttcgtcaagggtcatttaggtgcttcagcggaaacagcaggatattacagggcttagaagatatcccctccctacaaaatttgagtctag |
4028 |
T |
|
| Q |
115 |
catactttgattacttgccggaatcgttgggagccatgacttctcttcaaagagtagaaatcatttcatgtactgatgtaaagtttctaccaaatagctt |
214 |
Q |
| |
|
|| ||||| ||||| |||| ||||| ||||||||||||||||||||||||||| |||||||| |||||||| | |||||| || |||||||||||||| |
|
|
| T |
4029 |
cacactttcattacctgccagaatcattgggagccatgacttctcttcaaagattagaaatcttttcatgtgcaaatgtaatgtcgctaccaaatagctt |
4128 |
T |
|
| Q |
215 |
tcaaaacctcataaacttgcacacattgcttattgttggatgtcctgtgttggagaaacgatgcaagaaaggaactggggaagattggcaaaagatagct |
314 |
Q |
| |
|
||| ||||||| ||||||||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||||||||||||| |||||| || |
|
|
| T |
4129 |
tcagaacctcacaaacttgcatacattgcttattgttggatgccctatgttggagaagcgatgcaagaaaggaaccggggaagattggcataagatatct |
4228 |
T |
|
| Q |
315 |
cacgttcctgaattggagttaa |
336 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
4229 |
cacgttcctgaactggagttaa |
4250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 227 - 328
Target Start/End: Original strand, 38941694 - 38941795
Alignment:
| Q |
227 |
aaacttgcacacattgcttattgttggatgtcctgtgttggagaaacgatgcaagaaaggaactggggaagattggcaaaagatagctcacgttcctgaa |
326 |
Q |
| |
|
||||||||| | |||| |||||||| || ||| |||||||||| ||||||||| ||||| || ||||||||||| |||||||||||| |||||||| |
|
|
| T |
38941694 |
aaacttgcaaagattgtatattgttgcttgccctatgttggagaagagatgcaagagaggaaaaggtgaagattggcataagatagctcacattcctgaa |
38941793 |
T |
|
| Q |
327 |
tt |
328 |
Q |
| |
|
|| |
|
|
| T |
38941794 |
tt |
38941795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 38943066 - 38943017
Alignment:
| Q |
128 |
cttgccggaatcgttgggagccatgacttctcttcaaagagtagaaatca |
177 |
Q |
| |
|
||||||||| | |||||| ||||||||||||||||||||| || |||||| |
|
|
| T |
38943066 |
cttgccggactggttgggtgccatgacttctcttcaaagattacaaatca |
38943017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 6942 - 6881
Alignment:
| Q |
262 |
tgttggagaaacgatgcaagaaaggaactggggaagattggcaaaagatagctcacgttcct |
323 |
Q |
| |
|
|||||||||| ||||||||| ||||| || ||||||||||| |||||||||||| ||||| |
|
|
| T |
6942 |
tgttggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct |
6881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 6290 - 6222
Alignment:
| Q |
255 |
tgtcctgtgttggagaaacgatgcaagaaaggaactggggaagattggcaaaagatagctcacgttcct |
323 |
Q |
| |
|
|||||| | |||||||| ||||||||| ||||| || ||||||||||| |||||||||||| ||||| |
|
|
| T |
6290 |
tgtcctatattggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct |
6222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 13375865 - 13375801
Alignment:
| Q |
262 |
tgttggagaaacgatgcaagaaaggaactggggaagattggcaaaagatagctcacgttcctgaa |
326 |
Q |
| |
|
|||||||||| |||||||||| ||||| || ||||||||| | |||||||||||| | |||||| |
|
|
| T |
13375865 |
tgttggagaagcgatgcaagagaggaataggagaagattgggataagatagctcacatacctgaa |
13375801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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