View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1616-INSERTION-5 (Length: 431)
Name: NF1616-INSERTION-5
Description: NF1616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1616-INSERTION-5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 205 - 431
Target Start/End: Complemental strand, 51299398 - 51299176
Alignment:
| Q |
205 |
ccactgaaaacttggaaataacttgaggtcaccattacaactaaggctccacatgaaagagccatatatgcacaactaactaaagatgtcaaaagaaaga |
304 |
Q |
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| T |
51299398 |
ccactgaaaacttggaaataacttgaggtcaccatttcaactaaggctccacatgaaagagccat----gcacaactaactaaagatgtcaaaagaaaga |
51299303 |
T |
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| Q |
305 |
ataccnnnnnnnngagaagaatgttcccatcaatttagatggctctaattccatctagctgatcactggtaggaataggaaaccaatcaaattttactac |
404 |
Q |
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| T |
51299302 |
ataccaaaaaaaagaaaagaatgttcctatcaatttagatggctctaattccatctagctgatcactggtaggaataggaaaccaatcaaattttactac |
51299203 |
T |
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| Q |
405 |
ttctaggttctatttgtggatgtgtca |
431 |
Q |
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| T |
51299202 |
ttctaggttctatttgtggatgtgtca |
51299176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 8 - 211
Target Start/End: Complemental strand, 51299620 - 51299417
Alignment:
| Q |
8 |
aaaccttccgaaacacaccttagttaaggaccgtctagaagagacttcaacaaaaaattcaccaatcacaacttaaatcattgaacgaccacaatgagat |
107 |
Q |
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||||||||| ||||||| |||||||||| || ||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
51299620 |
aaaccttcccaaacacatcttagttaagcactgtctagaagagacttcaaccaaaaattcactaatcacaacttaaatcattgaaagaccacaatgagat |
51299521 |
T |
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| Q |
108 |
ttctctccaattctcttgatgaactccattatataacagcctctacatttgaaagaaatgtacaaattattctgtctctcttattcacctccatctccca |
207 |
Q |
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| T |
51299520 |
ttctctccaattctcttgatgaactccattatataacagcctctacatttgaaagaaatgtacaaattattctgtctctcttattcacctccatctccaa |
51299421 |
T |
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| Q |
208 |
ctga |
211 |
Q |
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|||| |
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| T |
51299420 |
ctga |
51299417 |
T |
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