View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1616-INSERTION-8 (Length: 757)
Name: NF1616-INSERTION-8
Description: NF1616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1616-INSERTION-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 705; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 22 - 757
Target Start/End: Complemental strand, 32857428 - 32856692
Alignment:
| Q |
22 |
tttgcctccaaattttcaaacaacaaaattaaccaatttccctctaaatcatatatatcaatatttgtcgcaatggcaacatttactcaaaaaatggcaa |
121 |
Q |
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| T |
32857428 |
tttgcctccaaattttcaaacaacaaaattaaccaatttccctctaaatcctatatatcaatatttgtcgcaatggcaacatttactcaaaaaatggcaa |
32857329 |
T |
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| Q |
122 |
tacgttatattcttctagcattttttctctatacaggtaccctgtttgttctgttttttcatgcatgttatcttatctttattgcattctagtttgtaac |
221 |
Q |
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| T |
32857328 |
tacgttatattcttctagcattttttctctatacaggtaccctgtttgttctgttttttcatgcatgttatcttatctttactgcattctagtttgtaac |
32857229 |
T |
|
| Q |
222 |
attattactaatagatttttactgatta-gcaatttcagatactggaattttcgcacgtgttgcgtcgtttggaataaactatggacaagtagctaacaa |
320 |
Q |
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| T |
32857228 |
attattgctaatagatttttactgattatgcaatttcagatactggaattttcgcacgtgttgcgtcgtttggaataaactatggacaagtagctaacaa |
32857129 |
T |
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| Q |
321 |
tttgccacaaccagaaaaagtactagaacttctcagcaccttaaagatcacaaaaacaagaatctacgatacgaatccacagattcttaaagctttcgcc |
420 |
Q |
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| T |
32857128 |
tttgccacaaccagaaaaagtactagaacttctcagcaccttaaagatcacaaaaacaagaatctacgatacgaatccacagattcttaaagctttcgcc |
32857029 |
T |
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| Q |
421 |
aattcaaacgtggaaatcatcgtaacaattgaaaatcaaatactaaaccaattaaatgatccacaacaagcacttcaatgggtaaataccaatatcaaac |
520 |
Q |
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| T |
32857028 |
aattcaaacgtggaaatcatcgtaacaattgaaaatcaaatactaaaccaattaaatgatccacaacaagcacttcaatgggtaaataccaatatcaaac |
32856929 |
T |
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| Q |
521 |
catatcttccagacacaaagatcactggaattcaagtagggaatgaagttttcacagaactcgacacgaccctaattcaatatcttgttccagcagtgat |
620 |
Q |
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| T |
32856928 |
catatcttccagacacaaagatcactggaattcaagtagggaatgaagttttcacagaactcgacacaaccctaattcaatatcttgttccagcagtgat |
32856829 |
T |
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| Q |
621 |
caacatttacaatgctctagctcaattaggtttggacacaaacattcatgtgtcaacacctagttcattagaagttcttgaagaatcttaccctccttca |
720 |
Q |
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| T |
32856828 |
caacatttacaatgctctagttcaattaggtttgaacacaaacattcatgtgtcaacacctagttcattagaagttcttgaagaatcttaccctccttca |
32856729 |
T |
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| Q |
721 |
gctggtagtttcagaagtgaaatctctgaaatcatga |
757 |
Q |
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| T |
32856728 |
gctggtagtttcagaagtgaaatctctgaaatcatga |
32856692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 289 - 650
Target Start/End: Original strand, 6291669 - 6292030
Alignment:
| Q |
289 |
tttggaataaactatggacaagtagctaacaatttgccacaaccagaaaaagtactagaacttctcagcaccttaaagatcacaaaaacaagaatctacg |
388 |
Q |
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| T |
6291669 |
tttgggatcaactatggtcaagttgctaacaatttgccacaacctgaaaaagttcttgtactattaagcactctcaacctcacaaaaacaagaatctatg |
6291768 |
T |
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| Q |
389 |
atacgaatccacagattcttaaagctttcgccaattcaaacgtggaaatcatcgtaacaattgaaaatcaaatactaaaccaattaaatgatccacaaca |
488 |
Q |
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| T |
6291769 |
acacaaatcctcaaattctaagtacattttcaaaatcaaatattgaagtaattgtgacggttgaaaatgaaatattaaaccaattagatgatccacaaca |
6291868 |
T |
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| Q |
489 |
agcacttcaatgggtaaataccaatatcaaaccatatcttccagacacaaagatcactggaattcaagtagggaatgaagttttcacagaactcgacacg |
588 |
Q |
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| T |
6291869 |
agcacttcaatgggtgaacagccgcatcataccgtacctacctaacacaaaaatcaccggaattcaagtaggtaacgaagttttcaccgacgatgataca |
6291968 |
T |
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| Q |
589 |
accctaattcaatatcttgttccagcagtgatcaacatttacaatgctctagctcaattagg |
650 |
Q |
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| T |
6291969 |
actcttcttcaacatcttgttccggcggtgattaatatctacaatgctttagctaaattagg |
6292030 |
T |
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