View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16160_high_11 (Length: 303)
Name: NF16160_high_11
Description: NF16160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16160_high_11 |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: scaffold0157 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 36350 - 36092
Alignment:
| Q |
19 |
ttatctgatcttggaagatggaactagcaatgttaacttttttggtatgagattggttttcaagagtctttgaaatgtcatctgtatttataaggaaaac |
118 |
Q |
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| T |
36350 |
ttatctgatcttggaagatggaactagcaatcttaacttttttggtatgagattgattttcaagagtctttgaaatgtcatctgtatttataaggaaaac |
36251 |
T |
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| Q |
119 |
aaattaaaatcgaaaaggtgttatatatgtgaagtaatttcttttttgacaatggaacaaaatatatagtnnnnnnntatagtataatggatacttcaat |
218 |
Q |
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| T |
36250 |
aaattaaaatcgaaaaggtgttatatatgtgaagtaatttcttttttgacaatggataaaaatatatagtaaaaaaatatagtataatggatacttcaat |
36151 |
T |
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| Q |
219 |
aaaatacttatttggaggtgacacccatggctatggagtcttcctttcatgcgcacatt |
277 |
Q |
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| T |
36150 |
aaaatacttatttggaggtgacacccatggctaaggagtcttcctttcatgcgcacatt |
36092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 12484127 - 12484385
Alignment:
| Q |
19 |
ttatctgatcttggaagatggaactagcaatgttaacttttttggtatgagattggttttcaagagtctttgaaatgtcatctgtatttataaggaaaac |
118 |
Q |
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| T |
12484127 |
ttatctgatcttggaagatggaactagcaatcttaacttttttggtatgagattgattttcaagagtctttgaaatgtcatctgtatttataaggaaaac |
12484226 |
T |
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| Q |
119 |
aaattaaaatcgaaaaggtgttatatatgtgaagtaatttcttttttgacaatggaacaaaatatatagtnnnnnnntatagtataatggatacttcaat |
218 |
Q |
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| T |
12484227 |
aaattaaaatcgaaaaggtgttatatatgtgaagtaatttcttttttgacaatggataaaaatatatagtaaaaaaatatagtataatggatacttcaat |
12484326 |
T |
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| Q |
219 |
aaaatacttatttggaggtgacacccatggctatggagtcttcctttcatgcgcacatt |
277 |
Q |
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| T |
12484327 |
aaaatacttatttggaggtgacacccatggctaaggagtcttcctttcatgcgcacatt |
12484385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 12465390 - 12465654
Alignment:
| Q |
16 |
caattatctgatcttggaagatggaactagcaatgttaacttttttggtatgagattggttttcaagagtctttgaaatgtcatctgtatttataaggaa |
115 |
Q |
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| T |
12465390 |
caattatctgatcttggaagatggaactagtaaccttaactttgttggtatgagattgattttcatggatctttgaaatgtcatctatatatataaggaa |
12465489 |
T |
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| Q |
116 |
aacaaattaaaatcgaaaaggtgttatatatgtgaagtaatttcttttttgacaatggaacaaaatatatagt-nnnnnnntatagtataatggatactt |
214 |
Q |
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| T |
12465490 |
aacaaattaaaatagaaaaggcattatatatctgaagtaatttcttgttttaaaatagaacaaaatatctagtaaaaaaaatatagtattatggatcctt |
12465589 |
T |
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| Q |
215 |
caataaaatacttatttggaggtgacacccatggctatggagtcttcctttcatgcgcacattgc |
279 |
Q |
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| T |
12465590 |
caataaaatacttatttcgaggtgacacccatggctaaggagtcttactttcatgcacacattgc |
12465654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 12468198 - 12468281
Alignment:
| Q |
196 |
tatagtataatggatacttcaataaaatacttatttggaggtgacacccatggctatggagtcttcctttcatgcgcacattgc |
279 |
Q |
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| T |
12468198 |
tatagtattatggatccttcaataaaatacttatttcgaggtgacacctatggctaaggagtcttactttcatgcacacattgc |
12468281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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