View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16160_high_13 (Length: 266)
Name: NF16160_high_13
Description: NF16160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16160_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 42449694 - 42449460
Alignment:
| Q |
20 |
gtaagcaacacctcgttgctaaagtcaaatgaaagcaaacattcttcaatattttttgattcactttttgcccaccaatgnnnnnnnccatccatgtaca |
119 |
Q |
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| T |
42449694 |
gtaagcaacacctcgttgctaaagtcaaatgaaagcaaacattcttcaatattttttgattcactttttgcccaccaatgaaaaaaaccatccatgtaca |
42449595 |
T |
|
| Q |
120 |
ctcccatacctcccaatgatgaatagaaataacaattacgcatatcaaaatcaagtttcttccaagagttatttttgagactatatacttcccacaaggg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42449594 |
ctcccatacctcccaatgatgaatagaaataacaattacgcatatcaaaatcaagtttcttccaagagttatttttgagactatatacttcccacaaggg |
42449495 |
T |
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| Q |
220 |
gtcgtaagatttatcttcccatatcaaatcacctt |
254 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
42449494 |
gtcgtaggatttatcttcccatatcaaatcacctt |
42449460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 42262250 - 42262026
Alignment:
| Q |
25 |
caacacctcgttgctaaagtcaaatgaaagcaaacattcttcaatattttttgattcactttttgcccaccaatgnnnnnnnccatccatgtacactccc |
124 |
Q |
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|||| |||| ||||||||||||||||| | |||||| |||||||||||||| ||||||||||| ||||||||||| |||||| |||| | ||| |
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| T |
42262250 |
caactcctcattgctaaagtcaaatgacaacaaacactcttcaatatttttggattcacttttagcccaccaatgaaacattccatccgtgtagagtccg |
42262151 |
T |
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| Q |
125 |
atacctcccaatgatgaatagaaataacaattacgcatatcaaaatcaagtttcttccaagagttatttttgagactatatacttcccacaaggggtcgt |
224 |
Q |
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| T |
42262150 |
atacctcgcaatggcgtatagtaataacaattacgcatatcaaattcaagtttcttccaagagttacttttgagagaatatatctcccacaagggatcgt |
42262051 |
T |
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| Q |
225 |
aagatttatcttcccatatcaaatc |
249 |
Q |
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| ||| ||||||||||||||||||| |
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| T |
42262050 |
atgatctatcttcccatatcaaatc |
42262026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 39721190 - 39721238
Alignment:
| Q |
20 |
gtaagcaacacctcgttgctaaagtcaaatgaaagcaaacattcttcaa |
68 |
Q |
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|||| ||||||||| || |||||||||||||| | |||||||||||||| |
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| T |
39721190 |
gtaatcaacacctcattactaaagtcaaatgataccaaacattcttcaa |
39721238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 19225732 - 19225791
Alignment:
| Q |
147 |
aataacaattacgcatatcaaaatcaagtttcttccaagagttatttttgagactatata |
206 |
Q |
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|||||||||| ||||||||| || |||||| |||||||||||| |||| |||||||||| |
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| T |
19225732 |
aataacaattttgcatatcaacataaagttttttccaagagttactttttagactatata |
19225791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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