View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16160_high_5 (Length: 513)
Name: NF16160_high_5
Description: NF16160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16160_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 18 - 507
Target Start/End: Complemental strand, 47364911 - 47364421
Alignment:
| Q |
18 |
aacttcagtttctgttatctgaa-aattgctcgttggagtcttctctttttctgcatgaattacaaatttacaaatatcttcatgtgnnnnnnntagaag |
116 |
Q |
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| T |
47364911 |
aacttcagtttctgttatctgaagaattgctcgttggagtcttctctttttctgcatgaattacaaatttacaaatatcttcatgtgaaaaaaatagaag |
47364812 |
T |
|
| Q |
117 |
gtttcaacttagaatttggtttgcaaatagacatttaactgatttaagtaatggttaggtgcaaacttagacattagacttgtctgtaaatggaagaaca |
216 |
Q |
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| T |
47364811 |
gtttcaacttagaatttggtttgcaaatagacatttaactgatttaagtaatggttaggtgcaaacttagacattagacttgtctgtaaatggaagaaca |
47364712 |
T |
|
| Q |
217 |
atttgctgaacttgacatagaaataatagctacttataggcaaaagtagtcattgcaaagaccaaaaacatgcacgttatgagaactttactcttaacag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47364711 |
atttgctgaacttgacatagaaataatagctacttataggcaaaagtagtcgttgcaaagaccaaaaacatgcacgttatgagaactttactcttaacag |
47364612 |
T |
|
| Q |
317 |
taattttaatagtgcacacagttcaaagaattaaaataatgatgcatgtgatgtagattgagtgagatccaacatccaaaattgattacctatcctatcc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47364611 |
taattttaatagtgcacacagttcaaagaattaaaataatgatgcatgtgatgtagattgagtgagaaccaacatccaaaattgattacctatcctatcc |
47364512 |
T |
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| Q |
417 |
atcatatgaaatttccattaactctttaaaaaaggagaagattcatagttatgagacctaggtgctttgaaaaaagcatagtgatgatgtc |
507 |
Q |
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| T |
47364511 |
atcatatgaaatttccataaactctttaaaaaaggagaagattcatagttatgagacctaggtgctttgaaaaaagcatagtgatgatgtc |
47364421 |
T |
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