View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16160_high_7 (Length: 437)
Name: NF16160_high_7
Description: NF16160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16160_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 35 - 431
Target Start/End: Complemental strand, 47364817 - 47364421
Alignment:
| Q |
35 |
tagaaggtttcaacttagaatttggtttgcaaatagacatttaactgatttaagtaatggttaggtgcaaacttagacattagacttgtctgtaaatgga |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47364817 |
tagaaggtttcaacttagaatttggtttgcaaatagacatttaactgatttaagtaatggttaggtgcaaacttagacattagacttgtctgtaaatgga |
47364718 |
T |
|
| Q |
135 |
agaacaatttgctgaacttgacatagaaataatagctacttataggcaaaagtagtcattgcaaagaccaaaaacatgcacgttatgagaactttactct |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47364717 |
agaacaatttgctgaacttgacatagaaataatagctacttataggcaaaagtagtcgttgcaaagaccaaaaacatgcacgttatgagaactttactct |
47364618 |
T |
|
| Q |
235 |
taacagtaattttaatagtgcacacagttcaaagaattaaaataatgatgcatgtgatgtagattgagtgagatccaacatccaaaattgattacctatc |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47364617 |
taacagtaattttaatagtgcacacagttcaaagaattaaaataatgatgcatgtgatgtagattgagtgagaaccaacatccaaaattgattacctatc |
47364518 |
T |
|
| Q |
335 |
ctatccatcatatgaaatttccattaactctttaaaaaaggagaagattcatagttatgagacctaggtgctttgaaaaaagcatagtgatgatgtc |
431 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47364517 |
ctatccatcatatgaaatttccataaactctttaaaaaaggagaagattcatagttatgagacctaggtgctttgaaaaaagcatagtgatgatgtc |
47364421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University