View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16160_high_8 (Length: 414)
Name: NF16160_high_8
Description: NF16160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16160_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 9429260 - 9428863
Alignment:
| Q |
11 |
catcatcatatctccccacaacagctactttcaaaaccattggatgattcaacaaaacagcttccacctctaatgaactcacaaactcacccttagaata |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9429260 |
catcatcatatctccccacaacagctactttcaaaaccattggatgattcaacaaaacagcttccacctctaatgaactcacaaactcacccttagaata |
9429161 |
T |
|
| Q |
111 |
aataatatcttttgctctatctttcaaattaaaagaaccattaggtaacctaacacctaggtccctagtcttataccaaccatccctaaaagcttcatga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
9429160 |
aataatatcttttgctctatctttcaaattaaaagaaccattaggtaacctaacacctaggtccctagtcctataccagccatccctaaaagcttcatga |
9429061 |
T |
|
| Q |
211 |
ctcacttgtgaactcttaagataccctgacattgaagtgttccctttaaacataatttcacctatggtttttccatcatatggaacactcttcattgtat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9429060 |
ctcacttgtgaactcttaagataccctgacattgaagtattccctttaaacataatttcacctatggtttttccatcatatggaacactcttcattgtat |
9428961 |
T |
|
| Q |
311 |
ttggatctttcacatcaacttcaaccatcataaagtctataaccccttttttatcaacataattcagctttgtaatatcatcatcaaaattttgtttc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9428960 |
ttggatctttcacatcaacttcaaccatcataaagtctataaccccttttttatcaacataattcagctttgtaatatcatcatcaaaattttgtttc |
9428863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University